const db = require('../models'); const FileDBApi = require('./file'); const crypto = require('crypto'); const Utils = require('../utils'); const Sequelize = db.Sequelize; const Op = Sequelize.Op; module.exports = class Scientific_articlesDBApi { static async create(data, options) { const currentUser = (options && options.currentUser) || { id: null }; const transaction = (options && options.transaction) || undefined; const scientific_articles = await db.scientific_articles.create( { id: data.id || undefined, title_text: data.title_text || null , abstract_text: data.abstract_text || null , journal: data.journal || null , published_at: data.published_at || null , doi: data.doi || null , url: data.url || null , keywords: data.keywords || null , validation_status: data.validation_status || null , validation_notes: data.validation_notes || null , importHash: data.importHash || null, createdById: currentUser.id, updatedById: currentUser.id, }, { transaction }, ); await scientific_articles.setValidated_by_user( data.validated_by_user || null, { transaction, }); await scientific_articles.setAccounts( data.accounts || null, { transaction, }); await FileDBApi.replaceRelationFiles( { belongsTo: db.scientific_articles.getTableName(), belongsToColumn: 'pdf_file', belongsToId: scientific_articles.id, }, data.pdf_file, options, ); return scientific_articles; } static async bulkImport(data, options) { const currentUser = (options && options.currentUser) || { id: null }; const transaction = (options && options.transaction) || undefined; // Prepare data - wrapping individual data transformations in a map() method const scientific_articlesData = data.map((item, index) => ({ id: item.id || undefined, title_text: item.title_text || null , abstract_text: item.abstract_text || null , journal: item.journal || null , published_at: item.published_at || null , doi: item.doi || null , url: item.url || null , keywords: item.keywords || null , validation_status: item.validation_status || null , validation_notes: item.validation_notes || null , importHash: item.importHash || null, createdById: currentUser.id, updatedById: currentUser.id, createdAt: new Date(Date.now() + index * 1000), })); // Bulk create items const scientific_articles = await db.scientific_articles.bulkCreate(scientific_articlesData, { transaction }); // For each item created, replace relation files for (let i = 0; i < scientific_articles.length; i++) { await FileDBApi.replaceRelationFiles( { belongsTo: db.scientific_articles.getTableName(), belongsToColumn: 'pdf_file', belongsToId: scientific_articles[i].id, }, data[i].pdf_file, options, ); } return scientific_articles; } static async update(id, data, options) { const currentUser = (options && options.currentUser) || {id: null}; const transaction = (options && options.transaction) || undefined; const globalAccess = currentUser.app_role?.globalAccess; const scientific_articles = await db.scientific_articles.findByPk(id, {}, {transaction}); const updatePayload = {}; if (data.title_text !== undefined) updatePayload.title_text = data.title_text; if (data.abstract_text !== undefined) updatePayload.abstract_text = data.abstract_text; if (data.journal !== undefined) updatePayload.journal = data.journal; if (data.published_at !== undefined) updatePayload.published_at = data.published_at; if (data.doi !== undefined) updatePayload.doi = data.doi; if (data.url !== undefined) updatePayload.url = data.url; if (data.keywords !== undefined) updatePayload.keywords = data.keywords; if (data.validation_status !== undefined) updatePayload.validation_status = data.validation_status; if (data.validation_notes !== undefined) updatePayload.validation_notes = data.validation_notes; updatePayload.updatedById = currentUser.id; await scientific_articles.update(updatePayload, {transaction}); if (data.validated_by_user !== undefined) { await scientific_articles.setValidated_by_user( data.validated_by_user, { transaction } ); } if (data.accounts !== undefined) { await scientific_articles.setAccounts( data.accounts, { transaction } ); } await FileDBApi.replaceRelationFiles( { belongsTo: db.scientific_articles.getTableName(), belongsToColumn: 'pdf_file', belongsToId: scientific_articles.id, }, data.pdf_file, options, ); return scientific_articles; } static async deleteByIds(ids, options) { const currentUser = (options && options.currentUser) || { id: null }; const transaction = (options && options.transaction) || undefined; const scientific_articles = await db.scientific_articles.findAll({ where: { id: { [Op.in]: ids, }, }, transaction, }); await db.sequelize.transaction(async (transaction) => { for (const record of scientific_articles) { await record.update( {deletedBy: currentUser.id}, {transaction} ); } for (const record of scientific_articles) { await record.destroy({transaction}); } }); return scientific_articles; } static async remove(id, options) { const currentUser = (options && options.currentUser) || {id: null}; const transaction = (options && options.transaction) || undefined; const scientific_articles = await db.scientific_articles.findByPk(id, options); await scientific_articles.update({ deletedBy: currentUser.id }, { transaction, }); await scientific_articles.destroy({ transaction }); return scientific_articles; } static async findBy(where, options) { const transaction = (options && options.transaction) || undefined; const scientific_articles = await db.scientific_articles.findOne( { where }, { transaction }, ); if (!scientific_articles) { return scientific_articles; } const output = scientific_articles.get({plain: true}); output.article_recommendations_article = await scientific_articles.getArticle_recommendations_article({ transaction }); output.validated_by_user = await scientific_articles.getValidated_by_user({ transaction }); output.pdf_file = await scientific_articles.getPdf_file({ transaction }); output.accounts = await scientific_articles.getAccounts({ transaction }); return output; } static async findAll( filter, globalAccess, options ) { const limit = filter.limit || 0; let offset = 0; let where = {}; const currentPage = +filter.page; const user = (options && options.currentUser) || null; const userAccounts = (user && user.accounts?.id) || null; if (userAccounts) { if (options?.currentUser?.accountsId) { where.accountsId = options.currentUser.accountsId; } } offset = currentPage * limit; const orderBy = null; const transaction = (options && options.transaction) || undefined; let include = [ { model: db.users, as: 'validated_by_user', where: filter.validated_by_user ? { [Op.or]: [ { id: { [Op.in]: filter.validated_by_user.split('|').map(term => Utils.uuid(term)) } }, { firstName: { [Op.or]: filter.validated_by_user.split('|').map(term => ({ [Op.iLike]: `%${term}%` })) } }, ] } : {}, }, { model: db.accounts, as: 'accounts', }, { model: db.file, as: 'pdf_file', }, ]; if (filter) { if (filter.id) { where = { ...where, ['id']: Utils.uuid(filter.id), }; } if (filter.title_text) { where = { ...where, [Op.and]: Utils.ilike( 'scientific_articles', 'title_text', filter.title_text, ), }; } if (filter.abstract_text) { where = { ...where, [Op.and]: Utils.ilike( 'scientific_articles', 'abstract_text', filter.abstract_text, ), }; } if (filter.journal) { where = { ...where, [Op.and]: Utils.ilike( 'scientific_articles', 'journal', filter.journal, ), }; } if (filter.doi) { where = { ...where, [Op.and]: Utils.ilike( 'scientific_articles', 'doi', filter.doi, ), }; } if (filter.url) { where = { ...where, [Op.and]: Utils.ilike( 'scientific_articles', 'url', filter.url, ), }; } if (filter.keywords) { where = { ...where, [Op.and]: Utils.ilike( 'scientific_articles', 'keywords', filter.keywords, ), }; } if (filter.validation_notes) { where = { ...where, [Op.and]: Utils.ilike( 'scientific_articles', 'validation_notes', filter.validation_notes, ), }; } if (filter.published_atRange) { const [start, end] = filter.published_atRange; if (start !== undefined && start !== null && start !== '') { where = { ...where, published_at: { ...where.published_at, [Op.gte]: start, }, }; } if (end !== undefined && end !== null && end !== '') { where = { ...where, published_at: { ...where.published_at, [Op.lte]: end, }, }; } } if (filter.active !== undefined) { where = { ...where, active: filter.active === true || filter.active === 'true' }; } if (filter.validation_status) { where = { ...where, validation_status: filter.validation_status, }; } if (filter.accounts) { const listItems = filter.accounts.split('|').map(item => { return Utils.uuid(item) }); where = { ...where, accountsId: {[Op.or]: listItems} }; } if (filter.createdAtRange) { const [start, end] = filter.createdAtRange; if (start !== undefined && start !== null && start !== '') { where = { ...where, ['createdAt']: { ...where.createdAt, [Op.gte]: start, }, }; } if (end !== undefined && end !== null && end !== '') { where = { ...where, ['createdAt']: { ...where.createdAt, [Op.lte]: end, }, }; } } } if (globalAccess) { delete where.accountsId; } const queryOptions = { where, include, distinct: true, order: filter.field && filter.sort ? [[filter.field, filter.sort]] : [['createdAt', 'desc']], transaction: options?.transaction, logging: console.log }; if (!options?.countOnly) { queryOptions.limit = limit ? Number(limit) : undefined; queryOptions.offset = offset ? Number(offset) : undefined; } try { const { rows, count } = await db.scientific_articles.findAndCountAll(queryOptions); return { rows: options?.countOnly ? [] : rows, count: count }; } catch (error) { console.error('Error executing query:', error); throw error; } } static async findAllAutocomplete(query, limit, offset, globalAccess, organizationId,) { let where = {}; if (!globalAccess && organizationId) { where.organizationId = organizationId; } if (query) { where = { [Op.or]: [ { ['id']: Utils.uuid(query) }, Utils.ilike( 'scientific_articles', 'title_text', query, ), ], }; } const records = await db.scientific_articles.findAll({ attributes: [ 'id', 'title_text' ], where, limit: limit ? Number(limit) : undefined, offset: offset ? Number(offset) : undefined, orderBy: [['title_text', 'ASC']], }); return records.map((record) => ({ id: record.id, label: record.title_text, })); } };