Initial version
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Flatlogic Bot
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305
.cursorrules
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.cursorrules
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# Cursor Rules - Group 1: Development Philosophy & Coding Conventions
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1. Overall Architecture & Structure:
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- Enforce a clear separation of concerns between the backend and the frontend:
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- **Backend**: Use Express for routing, Passport for authentication, and Swagger for API documentation. Organize code into modules such as routes, services, and helpers.
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- **Example**:
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- Routes: `src/routes/auth.js` for authentication routes.
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- Services: `src/services/auth.js` for authentication logic.
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- Helpers: `src/helpers/wrapAsync.js` for wrapping asynchronous functions.
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- **Frontend**: Use Next.js with React and TypeScript. Structure components using functional components, hooks, and layouts.
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- **Example**:
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- Pages: `pages/index.tsx` for the main page.
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- Components: `components/Header.tsx` for the header component.
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- Layouts: `layouts/MainLayout.tsx` for common page layouts.
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- Ensure that backend modules and frontend components are organized for reusability and maintainability:
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- **Backend**: Separate business logic into services and use middleware for common tasks.
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- **Frontend**: Use reusable components and hooks to manage state and lifecycle.
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2. Coding Style & Formatting:
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- For the backend (JavaScript):
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• Use ES6+ features (const/let, arrow functions) consistently.
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• Follow Prettier and ESLint configurations (e.g., consistent 2-space indentation, semicolons, and single quotes).
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• Maintain clear asynchronous patterns with helper wrappers (e.g., wrapAsync).
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- **Example from auth.js**:
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```javascript
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router.post('/signin/local', wrapAsync(async (req, res) => {
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const payload = await AuthService.signin(req.body.email, req.body.password, req);
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res.status(200).send(payload);
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}));
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```
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• Document API endpoints with inline Swagger comments to ensure API clarity and consistency.
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- **Example**:
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```javascript
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/**
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* @swagger
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* /api/auth/signin:
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* post:
|
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* summary: Sign in a user
|
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* responses:
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* 200:
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* description: Successful login
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*/
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```
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- For the frontend (TypeScript/React):
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• Use functional components with strict typing and separation of concerns.
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- **Example**:
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```typescript
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const Button: React.FC<{ onClick: () => void }> = ({ onClick }) => (
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<button onClick={onClick}>Click me</button>
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);
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```
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• Follow naming conventions: PascalCase for components and types/interfaces, camelCase for variables, hooks, and function names.
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- **Example**:
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```typescript
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const useCustomHook = () => {
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const [state, setState] = useState(false);
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return [state, setState];
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};
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```
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• Utilize hooks (useEffect, useState) to manage state and lifecycle in a clear and concise manner.
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- **Example**:
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```typescript
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useEffect(() => {
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console.log('Component mounted');
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}, []);
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```
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3. Code Quality & Best Practices:
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- Ensure code modularity by splitting complex logic into smaller, testable units.
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- **Example**: In `auth.js`, routes are separated from business logic, which is handled in `AuthService`.
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- Write self-documenting code and add comments where the logic is non-trivial.
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- **Example**: Use descriptive function and variable names in `auth.js`, and add comments for complex asynchronous operations.
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- Embrace declarative programming and adhere to SOLID principles.
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- **Example**: In service functions, ensure each function has a single responsibility and dependencies are injected rather than hardcoded.
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4. Consistency & Tools Integration:
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- Leverage existing tools like Prettier and ESLint to automatically enforce style and formatting rules.
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- **Example**: Use `.prettierrc` and `.eslintrc.cjs` for configuration in your project.
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- Use TypeScript in the frontend to ensure type safety and catch errors early.
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- **Example**: Define interfaces and types in your React components to enforce strict typing.
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- Maintain uniformity in API design and error handling strategies.
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- **Example**: Consistently use Passport for authentication and a common error handling middleware in `auth.js`.
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## Group 2 – Naming Conventions
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1. File Naming and Structure:
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• Frontend:
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- Page Files: Use lower-case filenames (e.g., index.tsx) as prescribed by Next.js conventions.
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- **Example**: `pages/index.tsx`, `pages/about.tsx`
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- Component Files: Use PascalCase for React component files (e.g., WebSiteHeader.tsx, NavBar.tsx).
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- **Example**: `components/Header.tsx`, `components/Footer.tsx`
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- Directories: Use clear, descriptive names (e.g., 'pages', 'components', 'WebPageComponents').
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- **Example**: `src/pages`, `src/components`
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• Backend:
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- Use lower-case filenames for modules (e.g., index.js, auth.js, projects.js).
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- **Example**: `routes/auth.js`, `services/user.js`
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- When needed, use hyphenation for clarity, but maintain consistency.
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- **Example**: `helpers/wrap-async.js`
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2. Component and Module Naming:
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• Frontend:
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- React Components: Define components in PascalCase.
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- TypeScript Interfaces/Types: Use PascalCase (e.g., WebSiteHeaderProps).
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• Backend:
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- Classes (if any) and constructors should be in PascalCase; most helper functions and modules use camelCase.
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3. Variable, Function, and Hook Naming:
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• Use camelCase for variables and function names in both frontend and backend.
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- **Example**:
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```javascript
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const userName = 'John Doe';
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function handleLogin() { ... }
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```
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• Custom Hooks: Prefix with 'use' (e.g., useAuth, useForm).
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- **Example**:
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```typescript
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const useAuth = () => {
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const [isAuthenticated, setIsAuthenticated] = useState(false);
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return { isAuthenticated, setIsAuthenticated };
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};
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```
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4. Consistency and Readability:
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• Maintain uniform naming across the project to ensure clarity and ease of maintenance.
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- **Example**: Use consistent naming conventions for variables, functions, and components, such as camelCase for variables and functions, and PascalCase for components.
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- **Example**: In `auth.js`, ensure that all function names clearly describe their purpose, such as `handleLogin` or `validateUserInput`.
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## Group 3 – Frontend & React Best Practices
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1. Use of Functional Components & TypeScript:
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• Build all components as functional components.
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- **Example**:
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```typescript
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const Header: React.FC = () => {
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return <header>Header Content</header>;
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};
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```
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• Leverage TypeScript for static type checking and enforce strict prop and state types.
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- **Example**:
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```typescript
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interface ButtonProps {
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onClick: () => void;
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}
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const Button: React.FC<ButtonProps> = ({ onClick }) => (
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<button onClick={onClick}>Click me</button>
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);
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```
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2. Effective Use of React Hooks:
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• Utilize useState and useEffect appropriately with proper dependency arrays.
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- **Example**:
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```typescript
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const [count, setCount] = useState(0);
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useEffect(() => {
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console.log('Component mounted');
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}, []);
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```
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• Create custom hooks to encapsulate shared logic (e.g., useAppSelector).
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- **Example**:
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```typescript
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const useAuth = () => {
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const [isAuthenticated, setIsAuthenticated] = useState(false);
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return { isAuthenticated, setIsAuthenticated };
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};
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```
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3. Component Composition & Separation of Concerns:
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• Separate presentational (stateless) components from container components managing logic.
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- **Example**: Use `LayoutGuest` to encapsulate common page structures.
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4. Code Quality & Readability:
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• Maintain consistent formatting and adhere to Prettier and ESLint rules.
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• Use descriptive names for variables, functions, and components.
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• Document non-trivial logic with inline comments and consider implementing error boundaries where needed.
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• New code must adhere to these conventions to avoid ambiguity.
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• Use descriptive names that reflect the purpose and domain, avoiding abbreviations unless standard in the project.
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## Group 4 – Backend & API Guidelines
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1. API Endpoint Design & Documentation:
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• Follow RESTful naming conventions; all route handlers should be named clearly and consistently.
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- **Example**: Use verbs like `GET`, `POST`, `PUT`, `DELETE` to define actions, e.g., `GET /api/auth/me` to retrieve user info.
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• Document endpoints with Swagger annotations to provide descriptions, expected request bodies, and response codes.
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- **Example**:
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```javascript
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/**
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* @swagger
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* /api/auth/signin:
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* post:
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* summary: Sign in a user
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* requestBody:
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* description: User credentials
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* content:
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* application/json:
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* schema:
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* $ref: "#/components/schemas/Auth"
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* responses:
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* 200:
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* description: Successful login
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* 400:
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* description: Invalid username/password supplied
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*/
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```
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• Examples (for Auth endpoints):
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- POST /api/auth/signin/local
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• Description: Logs the user into the system.
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• Request Body (application/json):
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{ "email": "admin@flatlogic.com", "password": "password" }
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• Responses:
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- 200: Successful login (returns token and user data).
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- 400: Invalid username/password supplied.
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- GET /api/auth/me
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• Description: Retrieves current authorized user information.
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• Secured via Passport JWT; uses req.currentUser.
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• Responses:
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- 200: Returns current user info.
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- 400: Invalid credentials or missing user data.
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- POST /api/auth/signup
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• Description: Registers a new user.
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• Request Body (application/json):
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{ "email": "admin@flatlogic.com", "password": "password" }
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• Responses:
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- 200: New user signed up successfully.
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- 400: Invalid input supplied.
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- 500: Server error.
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## Group 5 – Testing, Quality Assurance & Error Handling
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1. Testing Guidelines:
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• Write unit tests for critical backend and frontend components using frameworks such as Jest, React Testing Library, and Mocha/Chai.
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- **Example**:
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```javascript
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test('should return user data', async () => {
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const user = await getUserData();
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expect(user).toHaveProperty('email');
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});
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```
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• Practice test-driven development and maintain high test coverage.
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• Regularly update tests following changes in business logic.
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2. Quality Assurance:
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• Enforce code quality with ESLint, Prettier, and static analysis tools.
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• Integrate continuous testing workflows (CI/CD) to catch issues early.
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- **Example**: Use GitHub Actions for automated testing and deployment.
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• Ensure documentation is kept up-to-date with the implemented code.
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3. Error Handling:
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• Back-end:
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- Wrap asynchronous route handlers with a helper (e.g., wrapAsync) to capture errors.
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- **Example**:
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```javascript
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router.post('/signin', wrapAsync(async (req, res) => {
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const user = await AuthService.signin(req.body);
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res.send(user);
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}));
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```
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- Use centralized error handling middleware (e.g., commonErrorHandler) for uniform error responses.
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• Front-end:
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- Implement error boundaries in React to gracefully handle runtime errors.
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- Display user-friendly error messages and log errors for further analysis.
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2. Authentication & Security:
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• Protect endpoints by using Passport.js with JWT (e.g., passport.authenticate('jwt', { session: false })).
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- **Example**:
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```javascript
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router.get('/profile', passport.authenticate('jwt', { session: false }), (req, res) => {
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res.send(req.user);
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});
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```
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• Ensure that secure routes check for existence of req.currentUser. If absent, return a ForbiddenError.
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3. Consistent Error Handling & Middleware Usage:
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• Wrap asynchronous route handlers with helpers like wrapAsync for error propagation.
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• Use centralized error handling middleware (e.g., commonErrorHandler) to capture and format errors uniformly.
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4. Modular Code Organization:
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• Organize backend code into separate files for routes, services, and database access (e.g., auth.js, projects.js, tasks.js).
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• Use descriptive, lowercase filenames for modules and routes.
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5. Endpoint Security Best Practices:
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• Validate input data and sanitize requests where necessary.
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• Restrict sensitive operations to authenticated users with proper role-based permissions.
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────────────────────────────────────────
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Group 6 – Accessibility, UI, and Styling Guidelines (Updated)
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────────────────────────────────────────
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1. Sidebar Styling:
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• The sidebar is implemented in the authenticated layout via the AsideMenu component, with the actual element defined in AsideMenuLayer (located at frontend/src/components/AsideMenuLayer.tsx) as an <aside> element with id="asideMenu".
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- **Example**:
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```css
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#asideMenu {
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background-color: #F8F4E1 !important;
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}
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```
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• When modifying sidebar styles, target #asideMenu and its child elements rather than generic selectors (e.g., avoid .app-sidebar) to ensure that the changes affect the actual rendered sidebar.
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• Remove or override any conflicting background utilities (such as an unwanted bg-white) so our desired background color (#F8F4E1) is fully visible. Use a highly specific selector if necessary.
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• Adjust spacing (padding/margins) at both the container (#asideMenu) and the individual menu item level to maintain a consistent, compact design.
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2. General Project Styling and Tailwind CSS Usage:
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• The application leverages Tailwind CSS extensively, with core styling defined in _theme.css using the @apply directive. Any new modifications should follow this pattern to ensure consistency.
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- **Example**:
|
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```css
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||||
.btn {
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||||
@apply bg-blue-500 text-white;
|
||||
}
|
||||
```
|
||||
• The themed blocks (like .theme-pink and .theme-green) standardize the UI's appearance. When applying custom overrides, ensure they integrate cleanly into these structures and avoid conflicts or circular dependency errors (e.g., issues when redefining utilities such as text-blue-600).
|
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• Adjustments via Tailwind CSS generally require modifying class names in the components and ensuring that global overrides are applied in the correct order. Consistent use of design tokens and custom color codes (e.g., #F8F4E1) throughout the app is crucial to a cohesive design.
|
||||
• Specificity is key. If a change isn't visually reflected as expected, inspect the rendered HTML to identify which classes are taking precedence.
|
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3
.dockerignore
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3
.dockerignore
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@ -0,0 +1,3 @@
|
||||
backend/node_modules
|
||||
frontend/node_modules
|
||||
frontend/build
|
||||
3
.gitignore
vendored
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3
.gitignore
vendored
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|
||||
node_modules/
|
||||
*/node_modules/
|
||||
*/build/
|
||||
187
502.html
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187
502.html
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|
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<!DOCTYPE html>
|
||||
<html lang="en">
|
||||
|
||||
<head>
|
||||
<meta charset="UTF-8">
|
||||
<meta name="viewport" content="width=device-width, initial-scale=1.0">
|
||||
<title>Service Starting</title>
|
||||
<style>
|
||||
body {
|
||||
font-family: sans-serif;
|
||||
display: flex;
|
||||
flex-direction: column;
|
||||
justify-content: center;
|
||||
align-items: center;
|
||||
min-height: 100vh;
|
||||
background-color: #EFF2FF;
|
||||
margin: 0;
|
||||
padding: 20px;
|
||||
}
|
||||
|
||||
.container {
|
||||
text-align: center;
|
||||
padding: 30px 40px;
|
||||
background-color: #fff;
|
||||
border-radius: 20px;
|
||||
margin-bottom: 20px;
|
||||
max-width: 538px;
|
||||
width: 100%;
|
||||
box-shadow: 0 13px 34px 0 rgba(167, 187, 242, 0.2);
|
||||
box-sizing: border-box;
|
||||
}
|
||||
|
||||
#status-heading {
|
||||
font-size: 24px;
|
||||
font-weight: 700;
|
||||
color: #02004E;
|
||||
margin-bottom: 20px;
|
||||
}
|
||||
|
||||
h2 {
|
||||
color: #333;
|
||||
margin-bottom: 15px;
|
||||
}
|
||||
|
||||
p {
|
||||
color: #666;
|
||||
font-size: 1.1em;
|
||||
margin-bottom: 10px;
|
||||
}
|
||||
|
||||
.tip {
|
||||
font-weight: 300;
|
||||
font-size: 17px;
|
||||
line-height: 150%;
|
||||
letter-spacing: 0;
|
||||
text-align: center;
|
||||
margin-top: 30px;
|
||||
}
|
||||
|
||||
.loader-container {
|
||||
position: relative;
|
||||
display: flex;
|
||||
justify-content: center;
|
||||
align-items: center;
|
||||
}
|
||||
|
||||
.loader {
|
||||
width: 100px;
|
||||
aspect-ratio: 1;
|
||||
border-radius: 50%;
|
||||
background:
|
||||
radial-gradient(farthest-side, #5C7EF1 94%, #0000) top/8px 8px no-repeat,
|
||||
conic-gradient(#0000 30%, #5C7EF1);
|
||||
-webkit-mask: radial-gradient(farthest-side, #0000 calc(100% - 8px), #000 0);
|
||||
animation: l13 2s infinite linear;
|
||||
}
|
||||
|
||||
@keyframes l13 {
|
||||
100% {
|
||||
transform: rotate(1turn)
|
||||
}
|
||||
}
|
||||
|
||||
.app-logo {
|
||||
position: absolute;
|
||||
width: 36px;
|
||||
}
|
||||
|
||||
.panel {
|
||||
padding: 0 18px;
|
||||
display: none;
|
||||
background-color: white;
|
||||
overflow: hidden;
|
||||
margin-top: 10px;
|
||||
}
|
||||
.show {
|
||||
display: block;
|
||||
}
|
||||
|
||||
.project-info {
|
||||
border: 1px solid #8C9DFF;
|
||||
border-radius: 10px;
|
||||
padding: 12px 16px;
|
||||
max-width: 600px;
|
||||
margin: 40px auto;
|
||||
background-color: #FBFCFF;
|
||||
}
|
||||
|
||||
.project-info h2 {
|
||||
color: #02004E;
|
||||
font-size: 14px;
|
||||
font-weight: 500;
|
||||
margin-bottom: 10px;
|
||||
text-align: left;
|
||||
}
|
||||
|
||||
.project-info p {
|
||||
color: #686791;
|
||||
font-size: 12px;
|
||||
font-weight: 400;
|
||||
text-align: left;
|
||||
}
|
||||
</style>
|
||||
</head>
|
||||
|
||||
<body>
|
||||
<div class="container">
|
||||
<h2 id="status-heading">Loading the app, just a moment…</h2>
|
||||
<p class="tip">The application is currently launching. The page will automatically refresh once site is
|
||||
available.</p>
|
||||
<div class="project-info">
|
||||
<h2>Oncology Service Manager</h2>
|
||||
<p>Web app to manage oncology patient dossiers, treatment protocols, appointments, and lab/imaging follow-up.</p>
|
||||
</div>
|
||||
<div class="loader-container">
|
||||
<img src="https://flatlogic.com/blog/wp-content/uploads/2025/05/logo-bot-1.png" alt="App Logo"
|
||||
class="app-logo">
|
||||
<div class="loader"></div>
|
||||
</div>
|
||||
<div class="panel">
|
||||
<video width="100%" height="315" controls loop>
|
||||
<source
|
||||
src="https://flatlogic.com/blog/wp-content/uploads/2025/04/20250430_1336_professional_dynamo_spinner_simple_compose_01jt349yvtenxt7xhg8hhr85j8.mp4"
|
||||
type="video/mp4">
|
||||
Your browser does not support the video tag.
|
||||
</video>
|
||||
</div>
|
||||
</div>
|
||||
<script>
|
||||
function checkAvailability() {
|
||||
fetch('/')
|
||||
.then(response => {
|
||||
if (response.ok) {
|
||||
window.location.reload();
|
||||
} else {
|
||||
setTimeout(checkAvailability, 5000);
|
||||
}
|
||||
})
|
||||
.catch(() => {
|
||||
setTimeout(checkAvailability, 5000);
|
||||
});
|
||||
}
|
||||
document.addEventListener('DOMContentLoaded', checkAvailability);
|
||||
|
||||
document.addEventListener('DOMContentLoaded', function () {
|
||||
const appTitle = document.querySelector('#status-heading');
|
||||
const panel = document.querySelector('.panel');
|
||||
const video = panel.querySelector('video');
|
||||
let clickCount = 0;
|
||||
|
||||
appTitle.addEventListener('click', function () {
|
||||
clickCount++;
|
||||
if (clickCount === 5) {
|
||||
panel.classList.toggle('show');
|
||||
if (panel.classList.contains('show')) {
|
||||
video.play();
|
||||
} else {
|
||||
video.pause();
|
||||
}
|
||||
clickCount = 0;
|
||||
}
|
||||
});
|
||||
});
|
||||
</script>
|
||||
</body>
|
||||
|
||||
</html>
|
||||
21
Dockerfile
Normal file
21
Dockerfile
Normal file
@ -0,0 +1,21 @@
|
||||
FROM node:20.15.1-alpine AS builder
|
||||
RUN apk add --no-cache git
|
||||
WORKDIR /app
|
||||
COPY frontend/package.json frontend/yarn.lock ./
|
||||
RUN yarn install --pure-lockfile
|
||||
COPY frontend .
|
||||
RUN yarn build
|
||||
|
||||
|
||||
|
||||
FROM node:20.15.1-alpine
|
||||
WORKDIR /app
|
||||
COPY backend/package.json backend/yarn.lock ./
|
||||
RUN yarn install --pure-lockfile
|
||||
COPY backend .
|
||||
|
||||
COPY --from=builder /app/build /app/public
|
||||
CMD ["yarn", "start"]
|
||||
|
||||
|
||||
|
||||
85
Dockerfile.dev
Normal file
85
Dockerfile.dev
Normal file
@ -0,0 +1,85 @@
|
||||
# Base image for Node.js dependencies
|
||||
FROM node:20.15.1-alpine AS frontend-deps
|
||||
RUN apk add --no-cache git
|
||||
WORKDIR /app/frontend
|
||||
COPY frontend/package.json frontend/yarn.lock ./
|
||||
RUN yarn install --pure-lockfile
|
||||
|
||||
FROM node:20.15.1-alpine AS backend-deps
|
||||
RUN apk add --no-cache git
|
||||
WORKDIR /app/backend
|
||||
COPY backend/package.json backend/yarn.lock ./
|
||||
RUN yarn install --pure-lockfile
|
||||
|
||||
FROM node:20.15.1-alpine AS app-shell-deps
|
||||
RUN apk add --no-cache git
|
||||
WORKDIR /app/app-shell
|
||||
COPY app-shell/package.json app-shell/yarn.lock ./
|
||||
RUN yarn install --pure-lockfile
|
||||
|
||||
# Nginx setup and application build
|
||||
FROM node:20.15.1-alpine AS build
|
||||
RUN apk add --no-cache git nginx curl
|
||||
RUN apk add --no-cache lsof procps
|
||||
RUN yarn global add concurrently
|
||||
|
||||
RUN apk add --no-cache \
|
||||
chromium \
|
||||
nss \
|
||||
freetype \
|
||||
harfbuzz \
|
||||
ttf-freefont \
|
||||
fontconfig
|
||||
|
||||
ENV PUPPETEER_SKIP_CHROMIUM_DOWNLOAD=true
|
||||
ENV PUPPETEER_EXECUTABLE_PATH=/usr/bin/chromium-browser
|
||||
|
||||
RUN mkdir -p /app/pids
|
||||
|
||||
# Make sure to add yarn global bin to PATH
|
||||
ENV PATH /root/.yarn/bin:/root/.config/yarn/global/node_modules/.bin:$PATH
|
||||
|
||||
# Copy dependencies
|
||||
WORKDIR /app
|
||||
COPY --from=frontend-deps /app/frontend /app/frontend
|
||||
COPY --from=backend-deps /app/backend /app/backend
|
||||
COPY --from=app-shell-deps /app/app-shell /app/app-shell
|
||||
|
||||
COPY frontend /app/frontend
|
||||
COPY backend /app/backend
|
||||
COPY app-shell /app/app-shell
|
||||
COPY docker /app/docker
|
||||
|
||||
# Copy all files from root to /app
|
||||
COPY . /app
|
||||
|
||||
# Copy Nginx configuration
|
||||
COPY nginx.conf /etc/nginx/nginx.conf
|
||||
|
||||
# Copy custom error page
|
||||
COPY 502.html /usr/share/nginx/html/502.html
|
||||
|
||||
# Change owner and permissions of the error page
|
||||
RUN chown nginx:nginx /usr/share/nginx/html/502.html && \
|
||||
chmod 644 /usr/share/nginx/html/502.html
|
||||
|
||||
# Expose the port the app runs on
|
||||
EXPOSE 8080
|
||||
ENV NODE_ENV=dev_stage
|
||||
ENV FRONT_PORT=3001
|
||||
ENV BACKEND_PORT=3000
|
||||
ENV APP_SHELL_PORT=4000
|
||||
|
||||
|
||||
CMD ["sh", "-c", "\
|
||||
yarn --cwd /app/frontend dev & echo $! > /app/pids/frontend.pid && \
|
||||
yarn --cwd /app/backend start & echo $! > /app/pids/backend.pid && \
|
||||
sleep 10 && nginx -g 'daemon off;' & \
|
||||
NGINX_PID=$! && \
|
||||
echo 'Waiting for backend (port 3000) to be available...' && \
|
||||
while ! nc -z localhost ${BACKEND_PORT}; do \
|
||||
sleep 2; \
|
||||
done && \
|
||||
echo 'Backend is up. Starting app_shell for Git check...' && \
|
||||
yarn --cwd /app/app-shell start && \
|
||||
wait $NGINX_PID"]
|
||||
244
README.md
Normal file
244
README.md
Normal file
@ -0,0 +1,244 @@
|
||||
|
||||
|
||||
# Oncology Service Manager
|
||||
|
||||
|
||||
## This project was generated by [Flatlogic Platform](https://flatlogic.com).
|
||||
|
||||
|
||||
- Frontend: [React.js](https://flatlogic.com/templates?framework%5B%5D=react&sort=default)
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
- Backend: [NodeJS](https://flatlogic.com/templates?backend%5B%5D=nodejs&sort=default)
|
||||
|
||||
<details><summary>Backend Folder Structure</summary>
|
||||
|
||||
The generated application has the following backend folder structure:
|
||||
|
||||
`src` folder which contains your working files that will be used later to create the build. The src folder contains folders as:
|
||||
|
||||
- `auth` - config the library for authentication and authorization;
|
||||
|
||||
- `db` - contains such folders as:
|
||||
|
||||
- `api` - documentation that is automatically generated by jsdoc or other tools;
|
||||
|
||||
- `migrations` - is a skeleton of the database or all the actions that users do with the database;
|
||||
|
||||
- `models`- what will represent the database for the backend;
|
||||
|
||||
- `seeders` - the entity that creates the data for the database.
|
||||
|
||||
- `routes` - this folder would contain all the routes that you have created using Express Router and what they do would be exported from a Controller file;
|
||||
|
||||
- `services` - contains such folders as `emails` and `notifications`.
|
||||
</details>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
- Database: PostgreSQL
|
||||
|
||||
|
||||
- app-shel: Core application framework that provides essential infrastructure services
|
||||
for the entire application.
|
||||
-----------------------
|
||||
### We offer 2 ways how to start the project locally: by running Frontend and Backend or with Docker.
|
||||
-----------------------
|
||||
|
||||
## To start the project:
|
||||
|
||||
### Backend:
|
||||
|
||||
> Please change current folder: `cd backend`
|
||||
|
||||
|
||||
|
||||
#### Install local dependencies:
|
||||
`yarn install`
|
||||
|
||||
------------
|
||||
|
||||
#### Adjust local db:
|
||||
##### 1. Install postgres:
|
||||
|
||||
MacOS:
|
||||
|
||||
`brew install postgres`
|
||||
|
||||
> if you don’t have ‘brew‘ please install it (https://brew.sh) and repeat step `brew install postgres`.
|
||||
|
||||
Ubuntu:
|
||||
|
||||
`sudo apt update`
|
||||
|
||||
`sudo apt install postgresql postgresql-contrib`
|
||||
|
||||
##### 2. Create db and admin user:
|
||||
Before run and test connection, make sure you have created a database as described in the above configuration. You can use the `psql` command to create a user and database.
|
||||
|
||||
`psql postgres --u postgres`
|
||||
|
||||
Next, type this command for creating a new user with password then give access for creating the database.
|
||||
|
||||
`postgres-# CREATE ROLE admin WITH LOGIN PASSWORD 'admin_pass';`
|
||||
|
||||
`postgres-# ALTER ROLE admin CREATEDB;`
|
||||
|
||||
Quit `psql` then log in again using the new user that previously created.
|
||||
|
||||
`postgres-# \q`
|
||||
|
||||
`psql postgres -U admin`
|
||||
|
||||
Type this command to creating a new database.
|
||||
|
||||
`postgres=> CREATE DATABASE db_{your_project_name};`
|
||||
|
||||
Then give that new user privileges to the new database then quit the `psql`.
|
||||
|
||||
`postgres=> GRANT ALL PRIVILEGES ON DATABASE db_{your_project_name} TO admin;`
|
||||
|
||||
`postgres=> \q`
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
------------
|
||||
|
||||
|
||||
#### Create database:
|
||||
`yarn db:create`
|
||||
|
||||
#### Start production build:
|
||||
`yarn start`
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
### Frontend:
|
||||
|
||||
> Please change current folder: `cd frontend`
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## To start the project with Docker:
|
||||
### Description:
|
||||
|
||||
The project contains the **docker folder** and the `Dockerfile`.
|
||||
|
||||
The `Dockerfile` is used to Deploy the project to Google Cloud.
|
||||
|
||||
The **docker folder** contains a couple of helper scripts:
|
||||
|
||||
- `docker-compose.yml` (all our services: web, backend, db are described here)
|
||||
- `start-backend.sh` (starts backend, but only after the database)
|
||||
- `wait-for-it.sh` (imported from https://github.com/vishnubob/wait-for-it)
|
||||
|
||||
> To avoid breaking the application, we recommend you don't edit the following files: everything that includes the **docker folder** and `Dokerfile`.
|
||||
|
||||
## Run services:
|
||||
|
||||
1. Install docker compose (https://docs.docker.com/compose/install/)
|
||||
|
||||
2. Move to `docker` folder. All next steps should be done from this folder.
|
||||
|
||||
``` cd docker ```
|
||||
|
||||
3. Make executables from `wait-for-it.sh` and `start-backend.sh`:
|
||||
|
||||
``` chmod +x start-backend.sh && chmod +x wait-for-it.sh ```
|
||||
|
||||
4. Download dependend projects for services.
|
||||
|
||||
5. Review the docker-compose.yml file. Make sure that all services have Dockerfiles. Only db service doesn't require a Dockerfile.
|
||||
|
||||
6. Make sure you have needed ports (see them in `ports`) available on your local machine.
|
||||
|
||||
7. Start services:
|
||||
|
||||
7.1. With an empty database `rm -rf data && docker-compose up`
|
||||
|
||||
7.2. With a stored (from previus runs) database data `docker-compose up`
|
||||
|
||||
8. Check http://localhost:3000
|
||||
|
||||
9. Stop services:
|
||||
|
||||
9.1. Just press `Ctr+C`
|
||||
|
||||
## Most common errors:
|
||||
|
||||
1. `connection refused`
|
||||
|
||||
There could be many reasons, but the most common are:
|
||||
|
||||
- The port is not open on the destination machine.
|
||||
|
||||
- The port is open on the destination machine, but its backlog of pending connections is full.
|
||||
|
||||
- A firewall between the client and server is blocking access (also check local firewalls).
|
||||
|
||||
After checking for firewalls and that the port is open, use telnet to connect to the IP/port to test connectivity. This removes any potential issues from your application.
|
||||
|
||||
***MacOS:***
|
||||
|
||||
If you suspect that your SSH service might be down, you can run this command to find out:
|
||||
|
||||
`sudo service ssh status`
|
||||
|
||||
If the command line returns a status of down, then you’ve likely found the reason behind your connectivity error.
|
||||
|
||||
***Ubuntu:***
|
||||
|
||||
Sometimes a connection refused error can also indicate that there is an IP address conflict on your network. You can search for possible IP conflicts by running:
|
||||
|
||||
`arp-scan -I eth0 -l | grep <ipaddress>`
|
||||
|
||||
`arp-scan -I eth0 -l | grep <ipaddress>`
|
||||
|
||||
and
|
||||
|
||||
`arping <ipaddress>`
|
||||
|
||||
2. `yarn db:create` creates database with the assembled tables (on MacOS with Postgres database)
|
||||
|
||||
The workaround - put the next commands to your Postgres database terminal:
|
||||
|
||||
`DROP SCHEMA public CASCADE;`
|
||||
|
||||
`CREATE SCHEMA public;`
|
||||
|
||||
`GRANT ALL ON SCHEMA public TO postgres;`
|
||||
|
||||
`GRANT ALL ON SCHEMA public TO public;`
|
||||
|
||||
Afterwards, continue to start your project in the backend directory by running:
|
||||
|
||||
`yarn start`
|
||||
14
backend/.env
Normal file
14
backend/.env
Normal file
@ -0,0 +1,14 @@
|
||||
DB_NAME=app_38404
|
||||
DB_USER=app_38404
|
||||
DB_PASS=e7d99b91-a40d-4ec6-844e-869bbffeb87b
|
||||
DB_HOST=127.0.0.1
|
||||
DB_PORT=5432
|
||||
PORT=3000
|
||||
GOOGLE_CLIENT_ID=671001533244-kf1k1gmp6mnl0r030qmvdu6v36ghmim6.apps.googleusercontent.com
|
||||
GOOGLE_CLIENT_SECRET=Yo4qbKZniqvojzUQ60iKlxqR
|
||||
MS_CLIENT_ID=4696f457-31af-40de-897c-e00d7d4cff73
|
||||
MS_CLIENT_SECRET=m8jzZ.5UpHF3=-dXzyxiZ4e[F8OF54@p
|
||||
EMAIL_USER=AKIAVEW7G4PQUBGM52OF
|
||||
EMAIL_PASS=BLnD4hKGb6YkSz3gaQrf8fnyLi3C3/EdjOOsLEDTDPTz
|
||||
SECRET_KEY=HUEyqESqgQ1yTwzVlO6wprC9Kf1J1xuA
|
||||
PEXELS_KEY=Vc99rnmOhHhJAbgGQoKLZtsaIVfkeownoQNbTj78VemUjKh08ZYRbf18
|
||||
4
backend/.eslintignore
Normal file
4
backend/.eslintignore
Normal file
@ -0,0 +1,4 @@
|
||||
# Ignore generated and runtime files
|
||||
node_modules/
|
||||
tmp/
|
||||
logs/
|
||||
15
backend/.eslintrc.cjs
Normal file
15
backend/.eslintrc.cjs
Normal file
@ -0,0 +1,15 @@
|
||||
module.exports = {
|
||||
env: {
|
||||
node: true,
|
||||
es2021: true
|
||||
},
|
||||
extends: [
|
||||
'eslint:recommended'
|
||||
],
|
||||
plugins: [
|
||||
'import'
|
||||
],
|
||||
rules: {
|
||||
'import/no-unresolved': 'error'
|
||||
}
|
||||
};
|
||||
11
backend/.prettierrc
Normal file
11
backend/.prettierrc
Normal file
@ -0,0 +1,11 @@
|
||||
{
|
||||
"singleQuote": true,
|
||||
"tabWidth": 2,
|
||||
"printWidth": 80,
|
||||
"trailingComma": "all",
|
||||
"quoteProps": "as-needed",
|
||||
"jsxSingleQuote": true,
|
||||
"bracketSpacing": true,
|
||||
"bracketSameLine": false,
|
||||
"arrowParens": "always"
|
||||
}
|
||||
7
backend/.sequelizerc
Normal file
7
backend/.sequelizerc
Normal file
@ -0,0 +1,7 @@
|
||||
const path = require('path');
|
||||
module.exports = {
|
||||
"config": path.resolve("src", "db", "db.config.js"),
|
||||
"models-path": path.resolve("src", "db", "models"),
|
||||
"seeders-path": path.resolve("src", "db", "seeders"),
|
||||
"migrations-path": path.resolve("src", "db", "migrations")
|
||||
};
|
||||
23
backend/Dockerfile
Normal file
23
backend/Dockerfile
Normal file
@ -0,0 +1,23 @@
|
||||
FROM node:20.15.1-alpine
|
||||
|
||||
RUN apk update && apk add bash
|
||||
# Create app directory
|
||||
WORKDIR /usr/src/app
|
||||
|
||||
# Install app dependencies
|
||||
# A wildcard is used to ensure both package.json AND package-lock.json are copied
|
||||
# where available (npm@5+)
|
||||
COPY package*.json ./
|
||||
|
||||
RUN yarn install
|
||||
# If you are building your code for production
|
||||
# RUN npm ci --only=production
|
||||
|
||||
|
||||
# Bundle app source
|
||||
COPY . .
|
||||
|
||||
|
||||
EXPOSE 8080
|
||||
|
||||
CMD [ "yarn", "start" ]
|
||||
56
backend/README.md
Normal file
56
backend/README.md
Normal file
@ -0,0 +1,56 @@
|
||||
|
||||
#Oncology Service Manager - template backend,
|
||||
|
||||
#### Run App on local machine:
|
||||
|
||||
##### Install local dependencies:
|
||||
- `yarn install`
|
||||
|
||||
------------
|
||||
|
||||
##### Adjust local db:
|
||||
###### 1. Install postgres:
|
||||
- MacOS:
|
||||
- `brew install postgres`
|
||||
|
||||
- Ubuntu:
|
||||
- `sudo apt update`
|
||||
- `sudo apt install postgresql postgresql-contrib`
|
||||
|
||||
###### 2. Create db and admin user:
|
||||
- Before run and test connection, make sure you have created a database as described in the above configuration. You can use the `psql` command to create a user and database.
|
||||
- `psql postgres --u postgres`
|
||||
|
||||
- Next, type this command for creating a new user with password then give access for creating the database.
|
||||
- `postgres-# CREATE ROLE admin WITH LOGIN PASSWORD 'admin_pass';`
|
||||
- `postgres-# ALTER ROLE admin CREATEDB;`
|
||||
|
||||
- Quit `psql` then log in again using the new user that previously created.
|
||||
- `postgres-# \q`
|
||||
- `psql postgres -U admin`
|
||||
|
||||
- Type this command to creating a new database.
|
||||
- `postgres=> CREATE DATABASE db_oncology_service_manager;`
|
||||
|
||||
- Then give that new user privileges to the new database then quit the `psql`.
|
||||
- `postgres=> GRANT ALL PRIVILEGES ON DATABASE db_oncology_service_manager TO admin;`
|
||||
- `postgres=> \q`
|
||||
|
||||
------------
|
||||
|
||||
#### Api Documentation (Swagger)
|
||||
|
||||
http://localhost:8080/api-docs (local host)
|
||||
|
||||
http://host_name/api-docs
|
||||
|
||||
------------
|
||||
|
||||
##### Setup database tables or update after schema change
|
||||
- `yarn db:migrate`
|
||||
|
||||
##### Seed the initial data (admin accounts, relevant for the first setup):
|
||||
- `yarn db:seed`
|
||||
|
||||
##### Start build:
|
||||
- `yarn start`
|
||||
56
backend/package.json
Normal file
56
backend/package.json
Normal file
@ -0,0 +1,56 @@
|
||||
{
|
||||
"name": "oncologyservicemanager",
|
||||
"description": "Oncology Service Manager - template backend",
|
||||
"scripts": {
|
||||
"start": "npm run db:migrate && npm run db:seed && npm run watch",
|
||||
"lint": "eslint . --ext .js",
|
||||
"db:migrate": "sequelize-cli db:migrate",
|
||||
"db:seed": "sequelize-cli db:seed:all",
|
||||
"db:drop": "sequelize-cli db:drop",
|
||||
"db:create": "sequelize-cli db:create",
|
||||
"watch": "node watcher.js"
|
||||
},
|
||||
"dependencies": {
|
||||
"@google-cloud/storage": "^5.18.2",
|
||||
"axios": "^1.6.7",
|
||||
"bcrypt": "5.1.1",
|
||||
"chokidar": "^4.0.3",
|
||||
"cors": "2.8.5",
|
||||
"csv-parser": "^3.0.0",
|
||||
"express": "4.18.2",
|
||||
"formidable": "1.2.2",
|
||||
"helmet": "4.1.1",
|
||||
"json2csv": "^5.0.7",
|
||||
"jsonwebtoken": "8.5.1",
|
||||
"lodash": "4.17.21",
|
||||
"moment": "2.30.1",
|
||||
"multer": "^1.4.4",
|
||||
"mysql2": "2.2.5",
|
||||
"nodemailer": "6.9.9",
|
||||
"passport": "^0.7.0",
|
||||
"passport-google-oauth2": "^0.2.0",
|
||||
"passport-jwt": "^4.0.1",
|
||||
"passport-microsoft": "^0.1.0",
|
||||
"pg": "8.4.1",
|
||||
"pg-hstore": "2.3.4",
|
||||
"sequelize": "6.35.2",
|
||||
"sequelize-json-schema": "^2.1.1",
|
||||
"sqlite": "4.0.15",
|
||||
"swagger-jsdoc": "^6.2.8",
|
||||
"swagger-ui-express": "^5.0.0",
|
||||
"tedious": "^18.2.4"
|
||||
},
|
||||
"engines": {
|
||||
"node": ">=18"
|
||||
},
|
||||
"private": true,
|
||||
"devDependencies": {
|
||||
"cross-env": "7.0.3",
|
||||
"eslint": "^8.23.1",
|
||||
"eslint-plugin-import": "^2.29.1",
|
||||
"mocha": "8.1.3",
|
||||
"node-mocks-http": "1.9.0",
|
||||
"nodemon": "2.0.5",
|
||||
"sequelize-cli": "6.6.2"
|
||||
}
|
||||
}
|
||||
484
backend/src/ai/LocalAIApi.js
Normal file
484
backend/src/ai/LocalAIApi.js
Normal file
@ -0,0 +1,484 @@
|
||||
"use strict";
|
||||
|
||||
const fs = require("fs");
|
||||
const path = require("path");
|
||||
const http = require("http");
|
||||
const https = require("https");
|
||||
const { URL } = require("url");
|
||||
|
||||
let CONFIG_CACHE = null;
|
||||
|
||||
class LocalAIApi {
|
||||
static createResponse(params, options) {
|
||||
return createResponse(params, options);
|
||||
}
|
||||
|
||||
static request(pathValue, payload, options) {
|
||||
return request(pathValue, payload, options);
|
||||
}
|
||||
|
||||
static fetchStatus(aiRequestId, options) {
|
||||
return fetchStatus(aiRequestId, options);
|
||||
}
|
||||
|
||||
static awaitResponse(aiRequestId, options) {
|
||||
return awaitResponse(aiRequestId, options);
|
||||
}
|
||||
|
||||
static extractText(response) {
|
||||
return extractText(response);
|
||||
}
|
||||
|
||||
static decodeJsonFromResponse(response) {
|
||||
return decodeJsonFromResponse(response);
|
||||
}
|
||||
}
|
||||
|
||||
async function createResponse(params, options = {}) {
|
||||
const payload = { ...(params || {}) };
|
||||
|
||||
if (!Array.isArray(payload.input) || payload.input.length === 0) {
|
||||
return {
|
||||
success: false,
|
||||
error: "input_missing",
|
||||
message: 'Parameter "input" is required and must be a non-empty array.',
|
||||
};
|
||||
}
|
||||
|
||||
const cfg = config();
|
||||
if (!payload.model) {
|
||||
payload.model = cfg.defaultModel;
|
||||
}
|
||||
|
||||
const initial = await request(options.path, payload, options);
|
||||
if (!initial.success) {
|
||||
return initial;
|
||||
}
|
||||
|
||||
const data = initial.data;
|
||||
if (data && typeof data === "object" && data.ai_request_id) {
|
||||
const pollTimeout = Number(options.poll_timeout ?? 300);
|
||||
const pollInterval = Number(options.poll_interval ?? 5);
|
||||
return await awaitResponse(data.ai_request_id, {
|
||||
interval: pollInterval,
|
||||
timeout: pollTimeout,
|
||||
headers: options.headers,
|
||||
timeout_per_call: options.timeout,
|
||||
verify_tls: options.verify_tls,
|
||||
});
|
||||
}
|
||||
|
||||
return initial;
|
||||
}
|
||||
|
||||
async function request(pathValue, payload = {}, options = {}) {
|
||||
const cfg = config();
|
||||
const resolvedPath = pathValue || options.path || cfg.responsesPath;
|
||||
|
||||
if (!resolvedPath) {
|
||||
return {
|
||||
success: false,
|
||||
error: "project_id_missing",
|
||||
message: "PROJECT_ID is not defined; cannot resolve AI proxy endpoint.",
|
||||
};
|
||||
}
|
||||
|
||||
if (!cfg.projectUuid) {
|
||||
return {
|
||||
success: false,
|
||||
error: "project_uuid_missing",
|
||||
message: "PROJECT_UUID is not defined; aborting AI request.",
|
||||
};
|
||||
}
|
||||
|
||||
const bodyPayload = { ...(payload || {}) };
|
||||
if (!bodyPayload.project_uuid) {
|
||||
bodyPayload.project_uuid = cfg.projectUuid;
|
||||
}
|
||||
|
||||
const url = buildUrl(resolvedPath, cfg.baseUrl);
|
||||
const timeout = resolveTimeout(options.timeout, cfg.timeout);
|
||||
const verifyTls = resolveVerifyTls(options.verify_tls, cfg.verifyTls);
|
||||
|
||||
const headers = {
|
||||
Accept: "application/json",
|
||||
"Content-Type": "application/json",
|
||||
[cfg.projectHeader]: cfg.projectUuid,
|
||||
};
|
||||
if (Array.isArray(options.headers)) {
|
||||
for (const header of options.headers) {
|
||||
if (typeof header === "string" && header.includes(":")) {
|
||||
const [name, value] = header.split(":", 2);
|
||||
headers[name.trim()] = value.trim();
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
const body = JSON.stringify(bodyPayload);
|
||||
return sendRequest(url, "POST", body, headers, timeout, verifyTls);
|
||||
}
|
||||
|
||||
async function fetchStatus(aiRequestId, options = {}) {
|
||||
const cfg = config();
|
||||
if (!cfg.projectUuid) {
|
||||
return {
|
||||
success: false,
|
||||
error: "project_uuid_missing",
|
||||
message: "PROJECT_UUID is not defined; aborting status check.",
|
||||
};
|
||||
}
|
||||
|
||||
const statusPath = resolveStatusPath(aiRequestId, cfg);
|
||||
const url = buildUrl(statusPath, cfg.baseUrl);
|
||||
const timeout = resolveTimeout(options.timeout, cfg.timeout);
|
||||
const verifyTls = resolveVerifyTls(options.verify_tls, cfg.verifyTls);
|
||||
|
||||
const headers = {
|
||||
Accept: "application/json",
|
||||
[cfg.projectHeader]: cfg.projectUuid,
|
||||
};
|
||||
if (Array.isArray(options.headers)) {
|
||||
for (const header of options.headers) {
|
||||
if (typeof header === "string" && header.includes(":")) {
|
||||
const [name, value] = header.split(":", 2);
|
||||
headers[name.trim()] = value.trim();
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
return sendRequest(url, "GET", null, headers, timeout, verifyTls);
|
||||
}
|
||||
|
||||
async function awaitResponse(aiRequestId, options = {}) {
|
||||
const timeout = Number(options.timeout ?? 300);
|
||||
const interval = Math.max(Number(options.interval ?? 5), 1);
|
||||
const deadline = Date.now() + Math.max(timeout, interval) * 1000;
|
||||
|
||||
while (true) {
|
||||
const statusResp = await fetchStatus(aiRequestId, {
|
||||
headers: options.headers,
|
||||
timeout: options.timeout_per_call,
|
||||
verify_tls: options.verify_tls,
|
||||
});
|
||||
|
||||
if (statusResp.success) {
|
||||
const data = statusResp.data || {};
|
||||
if (data && typeof data === "object") {
|
||||
if (data.status === "success") {
|
||||
return {
|
||||
success: true,
|
||||
status: 200,
|
||||
data: data.response || data,
|
||||
};
|
||||
}
|
||||
if (data.status === "failed") {
|
||||
return {
|
||||
success: false,
|
||||
status: 500,
|
||||
error: String(data.error || "AI request failed"),
|
||||
data,
|
||||
};
|
||||
}
|
||||
}
|
||||
} else {
|
||||
return statusResp;
|
||||
}
|
||||
|
||||
if (Date.now() >= deadline) {
|
||||
return {
|
||||
success: false,
|
||||
error: "timeout",
|
||||
message: "Timed out waiting for AI response.",
|
||||
};
|
||||
}
|
||||
|
||||
await sleep(interval * 1000);
|
||||
}
|
||||
}
|
||||
|
||||
function extractText(response) {
|
||||
const payload = response && typeof response === "object" ? response.data || response : null;
|
||||
if (!payload || typeof payload !== "object") {
|
||||
return "";
|
||||
}
|
||||
|
||||
if (Array.isArray(payload.output)) {
|
||||
let combined = "";
|
||||
for (const item of payload.output) {
|
||||
if (!item || !Array.isArray(item.content)) {
|
||||
continue;
|
||||
}
|
||||
for (const block of item.content) {
|
||||
if (
|
||||
block &&
|
||||
typeof block === "object" &&
|
||||
block.type === "output_text" &&
|
||||
typeof block.text === "string" &&
|
||||
block.text.length > 0
|
||||
) {
|
||||
combined += block.text;
|
||||
}
|
||||
}
|
||||
}
|
||||
if (combined) {
|
||||
return combined;
|
||||
}
|
||||
}
|
||||
|
||||
if (
|
||||
payload.choices &&
|
||||
payload.choices[0] &&
|
||||
payload.choices[0].message &&
|
||||
typeof payload.choices[0].message.content === "string"
|
||||
) {
|
||||
return payload.choices[0].message.content;
|
||||
}
|
||||
|
||||
return "";
|
||||
}
|
||||
|
||||
function decodeJsonFromResponse(response) {
|
||||
const text = extractText(response);
|
||||
if (!text) {
|
||||
throw new Error("No text found in AI response.");
|
||||
}
|
||||
|
||||
const parsed = parseJson(text);
|
||||
if (parsed.ok && parsed.value && typeof parsed.value === "object") {
|
||||
return parsed.value;
|
||||
}
|
||||
|
||||
const stripped = stripJsonFence(text);
|
||||
if (stripped !== text) {
|
||||
const parsedStripped = parseJson(stripped);
|
||||
if (parsedStripped.ok && parsedStripped.value && typeof parsedStripped.value === "object") {
|
||||
return parsedStripped.value;
|
||||
}
|
||||
throw new Error(`JSON parse failed after stripping fences: ${parsedStripped.error}`);
|
||||
}
|
||||
|
||||
throw new Error(`JSON parse failed: ${parsed.error}`);
|
||||
}
|
||||
|
||||
function config() {
|
||||
if (CONFIG_CACHE) {
|
||||
return CONFIG_CACHE;
|
||||
}
|
||||
|
||||
ensureEnvLoaded();
|
||||
|
||||
const baseUrl = process.env.AI_PROXY_BASE_URL || "https://flatlogic.com";
|
||||
const projectId = process.env.PROJECT_ID || null;
|
||||
let responsesPath = process.env.AI_RESPONSES_PATH || null;
|
||||
if (!responsesPath && projectId) {
|
||||
responsesPath = `/projects/${projectId}/ai-request`;
|
||||
}
|
||||
|
||||
const timeout = resolveTimeout(process.env.AI_TIMEOUT, 30);
|
||||
const verifyTls = resolveVerifyTls(process.env.AI_VERIFY_TLS, true);
|
||||
|
||||
CONFIG_CACHE = {
|
||||
baseUrl,
|
||||
responsesPath,
|
||||
projectId,
|
||||
projectUuid: process.env.PROJECT_UUID || null,
|
||||
projectHeader: process.env.AI_PROJECT_HEADER || "project-uuid",
|
||||
defaultModel: process.env.AI_DEFAULT_MODEL || "gpt-5-mini",
|
||||
timeout,
|
||||
verifyTls,
|
||||
};
|
||||
|
||||
return CONFIG_CACHE;
|
||||
}
|
||||
|
||||
function buildUrl(pathValue, baseUrl) {
|
||||
const trimmed = String(pathValue || "").trim();
|
||||
if (trimmed === "") {
|
||||
return baseUrl;
|
||||
}
|
||||
if (trimmed.startsWith("http://") || trimmed.startsWith("https://")) {
|
||||
return trimmed;
|
||||
}
|
||||
if (trimmed.startsWith("/")) {
|
||||
return `${baseUrl}${trimmed}`;
|
||||
}
|
||||
return `${baseUrl}/${trimmed}`;
|
||||
}
|
||||
|
||||
function resolveStatusPath(aiRequestId, cfg) {
|
||||
const basePath = (cfg.responsesPath || "").replace(/\/+$/, "");
|
||||
if (!basePath) {
|
||||
return `/ai-request/${encodeURIComponent(String(aiRequestId))}/status`;
|
||||
}
|
||||
const normalized = basePath.endsWith("/ai-request") ? basePath : `${basePath}/ai-request`;
|
||||
return `${normalized}/${encodeURIComponent(String(aiRequestId))}/status`;
|
||||
}
|
||||
|
||||
function sendRequest(urlString, method, body, headers, timeoutSeconds, verifyTls) {
|
||||
return new Promise((resolve) => {
|
||||
let targetUrl;
|
||||
try {
|
||||
targetUrl = new URL(urlString);
|
||||
} catch (err) {
|
||||
resolve({
|
||||
success: false,
|
||||
error: "invalid_url",
|
||||
message: err.message,
|
||||
});
|
||||
return;
|
||||
}
|
||||
|
||||
const isHttps = targetUrl.protocol === "https:";
|
||||
const requestFn = isHttps ? https.request : http.request;
|
||||
const options = {
|
||||
protocol: targetUrl.protocol,
|
||||
hostname: targetUrl.hostname,
|
||||
port: targetUrl.port || (isHttps ? 443 : 80),
|
||||
path: `${targetUrl.pathname}${targetUrl.search}`,
|
||||
method: method.toUpperCase(),
|
||||
headers,
|
||||
timeout: Math.max(Number(timeoutSeconds || 30), 1) * 1000,
|
||||
};
|
||||
if (isHttps) {
|
||||
options.rejectUnauthorized = Boolean(verifyTls);
|
||||
}
|
||||
|
||||
const req = requestFn(options, (res) => {
|
||||
let responseBody = "";
|
||||
res.setEncoding("utf8");
|
||||
res.on("data", (chunk) => {
|
||||
responseBody += chunk;
|
||||
});
|
||||
res.on("end", () => {
|
||||
const status = res.statusCode || 0;
|
||||
const parsed = parseJson(responseBody);
|
||||
const payload = parsed.ok ? parsed.value : responseBody;
|
||||
|
||||
if (status >= 200 && status < 300) {
|
||||
const result = {
|
||||
success: true,
|
||||
status,
|
||||
data: payload,
|
||||
};
|
||||
if (!parsed.ok) {
|
||||
result.json_error = parsed.error;
|
||||
}
|
||||
resolve(result);
|
||||
return;
|
||||
}
|
||||
|
||||
const errorMessage =
|
||||
parsed.ok && payload && typeof payload === "object"
|
||||
? String(payload.error || payload.message || "AI proxy request failed")
|
||||
: String(responseBody || "AI proxy request failed");
|
||||
|
||||
resolve({
|
||||
success: false,
|
||||
status,
|
||||
error: errorMessage,
|
||||
response: payload,
|
||||
json_error: parsed.ok ? undefined : parsed.error,
|
||||
});
|
||||
});
|
||||
});
|
||||
|
||||
req.on("timeout", () => {
|
||||
req.destroy(new Error("request_timeout"));
|
||||
});
|
||||
|
||||
req.on("error", (err) => {
|
||||
resolve({
|
||||
success: false,
|
||||
error: "request_failed",
|
||||
message: err.message,
|
||||
});
|
||||
});
|
||||
|
||||
if (body) {
|
||||
req.write(body);
|
||||
}
|
||||
req.end();
|
||||
});
|
||||
}
|
||||
|
||||
function parseJson(value) {
|
||||
if (typeof value !== "string" || value.trim() === "") {
|
||||
return { ok: false, error: "empty_response" };
|
||||
}
|
||||
try {
|
||||
return { ok: true, value: JSON.parse(value) };
|
||||
} catch (err) {
|
||||
return { ok: false, error: err.message };
|
||||
}
|
||||
}
|
||||
|
||||
function stripJsonFence(text) {
|
||||
const trimmed = text.trim();
|
||||
if (trimmed.startsWith("```json")) {
|
||||
return trimmed.replace(/^```json/, "").replace(/```$/, "").trim();
|
||||
}
|
||||
if (trimmed.startsWith("```")) {
|
||||
return trimmed.replace(/^```/, "").replace(/```$/, "").trim();
|
||||
}
|
||||
return text;
|
||||
}
|
||||
|
||||
function resolveTimeout(value, fallback) {
|
||||
const parsed = Number.parseInt(String(value ?? fallback), 10);
|
||||
return Number.isNaN(parsed) ? Number(fallback) : parsed;
|
||||
}
|
||||
|
||||
function resolveVerifyTls(value, fallback) {
|
||||
if (value === undefined || value === null) {
|
||||
return Boolean(fallback);
|
||||
}
|
||||
return String(value).toLowerCase() !== "false" && String(value) !== "0";
|
||||
}
|
||||
|
||||
function ensureEnvLoaded() {
|
||||
if (process.env.PROJECT_UUID && process.env.PROJECT_ID) {
|
||||
return;
|
||||
}
|
||||
|
||||
const envPath = path.resolve(__dirname, "../../../../.env");
|
||||
if (!fs.existsSync(envPath)) {
|
||||
return;
|
||||
}
|
||||
|
||||
let content;
|
||||
try {
|
||||
content = fs.readFileSync(envPath, "utf8");
|
||||
} catch (err) {
|
||||
throw new Error(`Failed to read executor .env: ${err.message}`);
|
||||
}
|
||||
|
||||
for (const line of content.split(/\r?\n/)) {
|
||||
const trimmed = line.trim();
|
||||
if (!trimmed || trimmed.startsWith("#") || !trimmed.includes("=")) {
|
||||
continue;
|
||||
}
|
||||
const [rawKey, ...rest] = trimmed.split("=");
|
||||
const key = rawKey.trim();
|
||||
if (!key) {
|
||||
continue;
|
||||
}
|
||||
const value = rest.join("=").trim().replace(/^['"]|['"]$/g, "");
|
||||
if (!process.env[key]) {
|
||||
process.env[key] = value;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
function sleep(ms) {
|
||||
return new Promise((resolve) => setTimeout(resolve, ms));
|
||||
}
|
||||
|
||||
module.exports = {
|
||||
LocalAIApi,
|
||||
createResponse,
|
||||
request,
|
||||
fetchStatus,
|
||||
awaitResponse,
|
||||
extractText,
|
||||
decodeJsonFromResponse,
|
||||
};
|
||||
68
backend/src/auth/auth.js
Normal file
68
backend/src/auth/auth.js
Normal file
@ -0,0 +1,68 @@
|
||||
const config = require('../config');
|
||||
const providers = config.providers;
|
||||
const helpers = require('../helpers');
|
||||
const db = require('../db/models');
|
||||
|
||||
const passport = require('passport');
|
||||
const JWTstrategy = require('passport-jwt').Strategy;
|
||||
const ExtractJWT = require('passport-jwt').ExtractJwt;
|
||||
const GoogleStrategy = require('passport-google-oauth2').Strategy;
|
||||
const MicrosoftStrategy = require('passport-microsoft').Strategy;
|
||||
const UsersDBApi = require('../db/api/users');
|
||||
|
||||
|
||||
passport.use(new JWTstrategy({
|
||||
passReqToCallback: true,
|
||||
secretOrKey: config.secret_key,
|
||||
jwtFromRequest: ExtractJWT.fromAuthHeaderAsBearerToken()
|
||||
}, async (req, token, done) => {
|
||||
try {
|
||||
const user = await UsersDBApi.findBy( {email: token.user.email});
|
||||
|
||||
if (user && user.disabled) {
|
||||
return done (new Error(`User '${user.email}' is disabled`));
|
||||
}
|
||||
|
||||
req.currentUser = user;
|
||||
|
||||
return done(null, user);
|
||||
} catch (error) {
|
||||
done(error);
|
||||
}
|
||||
}));
|
||||
|
||||
passport.use(new GoogleStrategy({
|
||||
clientID: config.google.clientId,
|
||||
clientSecret: config.google.clientSecret,
|
||||
callbackURL: config.apiUrl + '/auth/signin/google/callback',
|
||||
passReqToCallback: true
|
||||
},
|
||||
function (request, accessToken, refreshToken, profile, done) {
|
||||
socialStrategy(profile.email, profile, providers.GOOGLE, done);
|
||||
}
|
||||
));
|
||||
|
||||
|
||||
passport.use(new MicrosoftStrategy({
|
||||
clientID: config.microsoft.clientId,
|
||||
clientSecret: config.microsoft.clientSecret,
|
||||
callbackURL: config.apiUrl + '/auth/signin/microsoft/callback',
|
||||
passReqToCallback: true
|
||||
},
|
||||
function (request, accessToken, refreshToken, profile, done) {
|
||||
const email = profile._json.mail || profile._json.userPrincipalName;
|
||||
socialStrategy(email, profile, providers.MICROSOFT, done);
|
||||
}
|
||||
));
|
||||
|
||||
function socialStrategy(email, profile, provider, done) {
|
||||
db.users.findOrCreate({where: {email, provider}}).then(([user, created]) => {
|
||||
const body = {
|
||||
id: user.id,
|
||||
email: user.email,
|
||||
name: profile.displayName,
|
||||
};
|
||||
const token = helpers.jwtSign({user: body});
|
||||
return done(null, {token});
|
||||
});
|
||||
}
|
||||
79
backend/src/config.js
Normal file
79
backend/src/config.js
Normal file
@ -0,0 +1,79 @@
|
||||
|
||||
|
||||
|
||||
const os = require('os');
|
||||
|
||||
const config = {
|
||||
gcloud: {
|
||||
bucket: "fldemo-files",
|
||||
hash: "afeefb9d49f5b7977577876b99532ac7"
|
||||
},
|
||||
bcrypt: {
|
||||
saltRounds: 12
|
||||
},
|
||||
admin_pass: "e7d99b91",
|
||||
user_pass: "869bbffeb87b",
|
||||
admin_email: "admin@flatlogic.com",
|
||||
providers: {
|
||||
LOCAL: 'local',
|
||||
GOOGLE: 'google',
|
||||
MICROSOFT: 'microsoft'
|
||||
},
|
||||
secret_key: process.env.SECRET_KEY || 'e7d99b91-a40d-4ec6-844e-869bbffeb87b',
|
||||
remote: '',
|
||||
port: process.env.NODE_ENV === "production" ? "" : "8080",
|
||||
hostUI: process.env.NODE_ENV === "production" ? "" : "http://localhost",
|
||||
portUI: process.env.NODE_ENV === "production" ? "" : "3000",
|
||||
|
||||
portUIProd: process.env.NODE_ENV === "production" ? "" : ":3000",
|
||||
|
||||
swaggerUI: process.env.NODE_ENV === "production" ? "" : "http://localhost",
|
||||
swaggerPort: process.env.NODE_ENV === "production" ? "" : ":8080",
|
||||
google: {
|
||||
clientId: process.env.GOOGLE_CLIENT_ID || '',
|
||||
clientSecret: process.env.GOOGLE_CLIENT_SECRET || '',
|
||||
},
|
||||
microsoft: {
|
||||
clientId: process.env.MS_CLIENT_ID || '',
|
||||
clientSecret: process.env.MS_CLIENT_SECRET || '',
|
||||
},
|
||||
uploadDir: os.tmpdir(),
|
||||
email: {
|
||||
from: 'Oncology Service Manager <app@flatlogic.app>',
|
||||
host: 'email-smtp.us-east-1.amazonaws.com',
|
||||
port: 587,
|
||||
auth: {
|
||||
user: process.env.EMAIL_USER || '',
|
||||
pass: process.env.EMAIL_PASS,
|
||||
},
|
||||
tls: {
|
||||
rejectUnauthorized: false
|
||||
}
|
||||
},
|
||||
roles: {
|
||||
|
||||
admin: 'Administrator',
|
||||
|
||||
|
||||
|
||||
user: 'Front Desk',
|
||||
|
||||
},
|
||||
|
||||
project_uuid: 'e7d99b91-a40d-4ec6-844e-869bbffeb87b',
|
||||
flHost: process.env.NODE_ENV === 'production' || process.env.NODE_ENV === 'dev_stage' ? 'https://flatlogic.com/projects' : 'http://localhost:3000/projects',
|
||||
|
||||
|
||||
gpt_key: process.env.GPT_KEY || '',
|
||||
};
|
||||
|
||||
config.pexelsKey = process.env.PEXELS_KEY || '';
|
||||
|
||||
config.pexelsQuery = 'Lightbeam through forest canopy';
|
||||
config.host = process.env.NODE_ENV === "production" ? config.remote : "http://localhost";
|
||||
config.apiUrl = `${config.host}${config.port ? `:${config.port}` : ``}/api`;
|
||||
config.swaggerUrl = `${config.swaggerUI}${config.swaggerPort}`;
|
||||
config.uiUrl = `${config.hostUI}${config.portUI ? `:${config.portUI}` : ``}/#`;
|
||||
config.backUrl = `${config.hostUI}${config.portUI ? `:${config.portUI}` : ``}`;
|
||||
|
||||
module.exports = config;
|
||||
624
backend/src/db/api/adverse_events.js
Normal file
624
backend/src/db/api/adverse_events.js
Normal file
@ -0,0 +1,624 @@
|
||||
|
||||
const db = require('../models');
|
||||
const FileDBApi = require('./file');
|
||||
const crypto = require('crypto');
|
||||
const Utils = require('../utils');
|
||||
|
||||
|
||||
|
||||
const Sequelize = db.Sequelize;
|
||||
const Op = Sequelize.Op;
|
||||
|
||||
module.exports = class Adverse_eventsDBApi {
|
||||
|
||||
|
||||
|
||||
static async create(data, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const adverse_events = await db.adverse_events.create(
|
||||
{
|
||||
id: data.id || undefined,
|
||||
|
||||
event_datetime: data.event_datetime
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
category: data.category
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
event_name: data.event_name
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
grade: data.grade
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
seriousness: data.seriousness
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
management: data.management
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
outcome: data.outcome
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
notes: data.notes
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
importHash: data.importHash || null,
|
||||
createdById: currentUser.id,
|
||||
updatedById: currentUser.id,
|
||||
},
|
||||
{ transaction },
|
||||
);
|
||||
|
||||
|
||||
await adverse_events.setPatient( data.patient || null, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
await adverse_events.setTumor_case( data.tumor_case || null, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
await adverse_events.setProtocol( data.protocol || null, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
return adverse_events;
|
||||
}
|
||||
|
||||
|
||||
static async bulkImport(data, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
// Prepare data - wrapping individual data transformations in a map() method
|
||||
const adverse_eventsData = data.map((item, index) => ({
|
||||
id: item.id || undefined,
|
||||
|
||||
event_datetime: item.event_datetime
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
category: item.category
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
event_name: item.event_name
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
grade: item.grade
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
seriousness: item.seriousness
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
management: item.management
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
outcome: item.outcome
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
notes: item.notes
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
importHash: item.importHash || null,
|
||||
createdById: currentUser.id,
|
||||
updatedById: currentUser.id,
|
||||
createdAt: new Date(Date.now() + index * 1000),
|
||||
}));
|
||||
|
||||
// Bulk create items
|
||||
const adverse_events = await db.adverse_events.bulkCreate(adverse_eventsData, { transaction });
|
||||
|
||||
// For each item created, replace relation files
|
||||
|
||||
|
||||
return adverse_events;
|
||||
}
|
||||
|
||||
static async update(id, data, options) {
|
||||
const currentUser = (options && options.currentUser) || {id: null};
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
|
||||
const adverse_events = await db.adverse_events.findByPk(id, {}, {transaction});
|
||||
|
||||
|
||||
|
||||
|
||||
const updatePayload = {};
|
||||
|
||||
if (data.event_datetime !== undefined) updatePayload.event_datetime = data.event_datetime;
|
||||
|
||||
|
||||
if (data.category !== undefined) updatePayload.category = data.category;
|
||||
|
||||
|
||||
if (data.event_name !== undefined) updatePayload.event_name = data.event_name;
|
||||
|
||||
|
||||
if (data.grade !== undefined) updatePayload.grade = data.grade;
|
||||
|
||||
|
||||
if (data.seriousness !== undefined) updatePayload.seriousness = data.seriousness;
|
||||
|
||||
|
||||
if (data.management !== undefined) updatePayload.management = data.management;
|
||||
|
||||
|
||||
if (data.outcome !== undefined) updatePayload.outcome = data.outcome;
|
||||
|
||||
|
||||
if (data.notes !== undefined) updatePayload.notes = data.notes;
|
||||
|
||||
|
||||
updatePayload.updatedById = currentUser.id;
|
||||
|
||||
await adverse_events.update(updatePayload, {transaction});
|
||||
|
||||
|
||||
|
||||
if (data.patient !== undefined) {
|
||||
await adverse_events.setPatient(
|
||||
|
||||
data.patient,
|
||||
|
||||
{ transaction }
|
||||
);
|
||||
}
|
||||
|
||||
if (data.tumor_case !== undefined) {
|
||||
await adverse_events.setTumor_case(
|
||||
|
||||
data.tumor_case,
|
||||
|
||||
{ transaction }
|
||||
);
|
||||
}
|
||||
|
||||
if (data.protocol !== undefined) {
|
||||
await adverse_events.setProtocol(
|
||||
|
||||
data.protocol,
|
||||
|
||||
{ transaction }
|
||||
);
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
return adverse_events;
|
||||
}
|
||||
|
||||
static async deleteByIds(ids, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const adverse_events = await db.adverse_events.findAll({
|
||||
where: {
|
||||
id: {
|
||||
[Op.in]: ids,
|
||||
},
|
||||
},
|
||||
transaction,
|
||||
});
|
||||
|
||||
await db.sequelize.transaction(async (transaction) => {
|
||||
for (const record of adverse_events) {
|
||||
await record.update(
|
||||
{deletedBy: currentUser.id},
|
||||
{transaction}
|
||||
);
|
||||
}
|
||||
for (const record of adverse_events) {
|
||||
await record.destroy({transaction});
|
||||
}
|
||||
});
|
||||
|
||||
|
||||
return adverse_events;
|
||||
}
|
||||
|
||||
static async remove(id, options) {
|
||||
const currentUser = (options && options.currentUser) || {id: null};
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const adverse_events = await db.adverse_events.findByPk(id, options);
|
||||
|
||||
await adverse_events.update({
|
||||
deletedBy: currentUser.id
|
||||
}, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
await adverse_events.destroy({
|
||||
transaction
|
||||
});
|
||||
|
||||
return adverse_events;
|
||||
}
|
||||
|
||||
static async findBy(where, options) {
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const adverse_events = await db.adverse_events.findOne(
|
||||
{ where },
|
||||
{ transaction },
|
||||
);
|
||||
|
||||
if (!adverse_events) {
|
||||
return adverse_events;
|
||||
}
|
||||
|
||||
const output = adverse_events.get({plain: true});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
output.patient = await adverse_events.getPatient({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
output.tumor_case = await adverse_events.getTumor_case({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
output.protocol = await adverse_events.getProtocol({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
|
||||
return output;
|
||||
}
|
||||
|
||||
static async findAll(
|
||||
filter,
|
||||
options
|
||||
) {
|
||||
const limit = filter.limit || 0;
|
||||
let offset = 0;
|
||||
let where = {};
|
||||
const currentPage = +filter.page;
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
offset = currentPage * limit;
|
||||
|
||||
const orderBy = null;
|
||||
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
let include = [
|
||||
|
||||
{
|
||||
model: db.patients,
|
||||
as: 'patient',
|
||||
|
||||
where: filter.patient ? {
|
||||
[Op.or]: [
|
||||
{ id: { [Op.in]: filter.patient.split('|').map(term => Utils.uuid(term)) } },
|
||||
{
|
||||
full_name: {
|
||||
[Op.or]: filter.patient.split('|').map(term => ({ [Op.iLike]: `%${term}%` }))
|
||||
}
|
||||
},
|
||||
]
|
||||
} : {},
|
||||
|
||||
},
|
||||
|
||||
{
|
||||
model: db.tumor_cases,
|
||||
as: 'tumor_case',
|
||||
|
||||
where: filter.tumor_case ? {
|
||||
[Op.or]: [
|
||||
{ id: { [Op.in]: filter.tumor_case.split('|').map(term => Utils.uuid(term)) } },
|
||||
{
|
||||
case_number: {
|
||||
[Op.or]: filter.tumor_case.split('|').map(term => ({ [Op.iLike]: `%${term}%` }))
|
||||
}
|
||||
},
|
||||
]
|
||||
} : {},
|
||||
|
||||
},
|
||||
|
||||
{
|
||||
model: db.treatment_protocols,
|
||||
as: 'protocol',
|
||||
|
||||
where: filter.protocol ? {
|
||||
[Op.or]: [
|
||||
{ id: { [Op.in]: filter.protocol.split('|').map(term => Utils.uuid(term)) } },
|
||||
{
|
||||
name: {
|
||||
[Op.or]: filter.protocol.split('|').map(term => ({ [Op.iLike]: `%${term}%` }))
|
||||
}
|
||||
},
|
||||
]
|
||||
} : {},
|
||||
|
||||
},
|
||||
|
||||
|
||||
|
||||
];
|
||||
|
||||
if (filter) {
|
||||
if (filter.id) {
|
||||
where = {
|
||||
...where,
|
||||
['id']: Utils.uuid(filter.id),
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
if (filter.event_name) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'adverse_events',
|
||||
'event_name',
|
||||
filter.event_name,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.management) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'adverse_events',
|
||||
'management',
|
||||
filter.management,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.notes) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'adverse_events',
|
||||
'notes',
|
||||
filter.notes,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
if (filter.event_datetimeRange) {
|
||||
const [start, end] = filter.event_datetimeRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
event_datetime: {
|
||||
...where.event_datetime,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
event_datetime: {
|
||||
...where.event_datetime,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
if (filter.active !== undefined) {
|
||||
where = {
|
||||
...where,
|
||||
active: filter.active === true || filter.active === 'true'
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
if (filter.category) {
|
||||
where = {
|
||||
...where,
|
||||
category: filter.category,
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.grade) {
|
||||
where = {
|
||||
...where,
|
||||
grade: filter.grade,
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.seriousness) {
|
||||
where = {
|
||||
...where,
|
||||
seriousness: filter.seriousness,
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.outcome) {
|
||||
where = {
|
||||
...where,
|
||||
outcome: filter.outcome,
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
if (filter.createdAtRange) {
|
||||
const [start, end] = filter.createdAtRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
['createdAt']: {
|
||||
...where.createdAt,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
['createdAt']: {
|
||||
...where.createdAt,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
const queryOptions = {
|
||||
where,
|
||||
include,
|
||||
distinct: true,
|
||||
order: filter.field && filter.sort
|
||||
? [[filter.field, filter.sort]]
|
||||
: [['createdAt', 'desc']],
|
||||
transaction: options?.transaction,
|
||||
logging: console.log
|
||||
};
|
||||
|
||||
if (!options?.countOnly) {
|
||||
queryOptions.limit = limit ? Number(limit) : undefined;
|
||||
queryOptions.offset = offset ? Number(offset) : undefined;
|
||||
}
|
||||
|
||||
try {
|
||||
const { rows, count } = await db.adverse_events.findAndCountAll(queryOptions);
|
||||
|
||||
return {
|
||||
rows: options?.countOnly ? [] : rows,
|
||||
count: count
|
||||
};
|
||||
} catch (error) {
|
||||
console.error('Error executing query:', error);
|
||||
throw error;
|
||||
}
|
||||
}
|
||||
|
||||
static async findAllAutocomplete(query, limit, offset, ) {
|
||||
let where = {};
|
||||
|
||||
|
||||
|
||||
if (query) {
|
||||
where = {
|
||||
[Op.or]: [
|
||||
{ ['id']: Utils.uuid(query) },
|
||||
Utils.ilike(
|
||||
'adverse_events',
|
||||
'event_name',
|
||||
query,
|
||||
),
|
||||
],
|
||||
};
|
||||
}
|
||||
|
||||
const records = await db.adverse_events.findAll({
|
||||
attributes: [ 'id', 'event_name' ],
|
||||
where,
|
||||
limit: limit ? Number(limit) : undefined,
|
||||
offset: offset ? Number(offset) : undefined,
|
||||
orderBy: [['event_name', 'ASC']],
|
||||
});
|
||||
|
||||
return records.map((record) => ({
|
||||
id: record.id,
|
||||
label: record.event_name,
|
||||
}));
|
||||
}
|
||||
|
||||
|
||||
};
|
||||
|
||||
643
backend/src/db/api/appointments.js
Normal file
643
backend/src/db/api/appointments.js
Normal file
@ -0,0 +1,643 @@
|
||||
|
||||
const db = require('../models');
|
||||
const FileDBApi = require('./file');
|
||||
const crypto = require('crypto');
|
||||
const Utils = require('../utils');
|
||||
|
||||
|
||||
|
||||
const Sequelize = db.Sequelize;
|
||||
const Op = Sequelize.Op;
|
||||
|
||||
module.exports = class AppointmentsDBApi {
|
||||
|
||||
|
||||
|
||||
static async create(data, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const appointments = await db.appointments.create(
|
||||
{
|
||||
id: data.id || undefined,
|
||||
|
||||
appointment_type: data.appointment_type
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
start_datetime: data.start_datetime
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
end_datetime: data.end_datetime
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
status: data.status
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
location: data.location
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
reason: data.reason
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
notes: data.notes
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
importHash: data.importHash || null,
|
||||
createdById: currentUser.id,
|
||||
updatedById: currentUser.id,
|
||||
},
|
||||
{ transaction },
|
||||
);
|
||||
|
||||
|
||||
await appointments.setPatient( data.patient || null, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
await appointments.setTumor_case( data.tumor_case || null, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
await appointments.setAssigned_user( data.assigned_user || null, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
return appointments;
|
||||
}
|
||||
|
||||
|
||||
static async bulkImport(data, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
// Prepare data - wrapping individual data transformations in a map() method
|
||||
const appointmentsData = data.map((item, index) => ({
|
||||
id: item.id || undefined,
|
||||
|
||||
appointment_type: item.appointment_type
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
start_datetime: item.start_datetime
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
end_datetime: item.end_datetime
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
status: item.status
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
location: item.location
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
reason: item.reason
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
notes: item.notes
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
importHash: item.importHash || null,
|
||||
createdById: currentUser.id,
|
||||
updatedById: currentUser.id,
|
||||
createdAt: new Date(Date.now() + index * 1000),
|
||||
}));
|
||||
|
||||
// Bulk create items
|
||||
const appointments = await db.appointments.bulkCreate(appointmentsData, { transaction });
|
||||
|
||||
// For each item created, replace relation files
|
||||
|
||||
|
||||
return appointments;
|
||||
}
|
||||
|
||||
static async update(id, data, options) {
|
||||
const currentUser = (options && options.currentUser) || {id: null};
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
|
||||
const appointments = await db.appointments.findByPk(id, {}, {transaction});
|
||||
|
||||
|
||||
|
||||
|
||||
const updatePayload = {};
|
||||
|
||||
if (data.appointment_type !== undefined) updatePayload.appointment_type = data.appointment_type;
|
||||
|
||||
|
||||
if (data.start_datetime !== undefined) updatePayload.start_datetime = data.start_datetime;
|
||||
|
||||
|
||||
if (data.end_datetime !== undefined) updatePayload.end_datetime = data.end_datetime;
|
||||
|
||||
|
||||
if (data.status !== undefined) updatePayload.status = data.status;
|
||||
|
||||
|
||||
if (data.location !== undefined) updatePayload.location = data.location;
|
||||
|
||||
|
||||
if (data.reason !== undefined) updatePayload.reason = data.reason;
|
||||
|
||||
|
||||
if (data.notes !== undefined) updatePayload.notes = data.notes;
|
||||
|
||||
|
||||
updatePayload.updatedById = currentUser.id;
|
||||
|
||||
await appointments.update(updatePayload, {transaction});
|
||||
|
||||
|
||||
|
||||
if (data.patient !== undefined) {
|
||||
await appointments.setPatient(
|
||||
|
||||
data.patient,
|
||||
|
||||
{ transaction }
|
||||
);
|
||||
}
|
||||
|
||||
if (data.tumor_case !== undefined) {
|
||||
await appointments.setTumor_case(
|
||||
|
||||
data.tumor_case,
|
||||
|
||||
{ transaction }
|
||||
);
|
||||
}
|
||||
|
||||
if (data.assigned_user !== undefined) {
|
||||
await appointments.setAssigned_user(
|
||||
|
||||
data.assigned_user,
|
||||
|
||||
{ transaction }
|
||||
);
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
return appointments;
|
||||
}
|
||||
|
||||
static async deleteByIds(ids, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const appointments = await db.appointments.findAll({
|
||||
where: {
|
||||
id: {
|
||||
[Op.in]: ids,
|
||||
},
|
||||
},
|
||||
transaction,
|
||||
});
|
||||
|
||||
await db.sequelize.transaction(async (transaction) => {
|
||||
for (const record of appointments) {
|
||||
await record.update(
|
||||
{deletedBy: currentUser.id},
|
||||
{transaction}
|
||||
);
|
||||
}
|
||||
for (const record of appointments) {
|
||||
await record.destroy({transaction});
|
||||
}
|
||||
});
|
||||
|
||||
|
||||
return appointments;
|
||||
}
|
||||
|
||||
static async remove(id, options) {
|
||||
const currentUser = (options && options.currentUser) || {id: null};
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const appointments = await db.appointments.findByPk(id, options);
|
||||
|
||||
await appointments.update({
|
||||
deletedBy: currentUser.id
|
||||
}, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
await appointments.destroy({
|
||||
transaction
|
||||
});
|
||||
|
||||
return appointments;
|
||||
}
|
||||
|
||||
static async findBy(where, options) {
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const appointments = await db.appointments.findOne(
|
||||
{ where },
|
||||
{ transaction },
|
||||
);
|
||||
|
||||
if (!appointments) {
|
||||
return appointments;
|
||||
}
|
||||
|
||||
const output = appointments.get({plain: true});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
output.clinical_visits_appointment = await appointments.getClinical_visits_appointment({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
output.patient = await appointments.getPatient({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
output.tumor_case = await appointments.getTumor_case({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
output.assigned_user = await appointments.getAssigned_user({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
|
||||
return output;
|
||||
}
|
||||
|
||||
static async findAll(
|
||||
filter,
|
||||
options
|
||||
) {
|
||||
const limit = filter.limit || 0;
|
||||
let offset = 0;
|
||||
let where = {};
|
||||
const currentPage = +filter.page;
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
offset = currentPage * limit;
|
||||
|
||||
const orderBy = null;
|
||||
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
let include = [
|
||||
|
||||
{
|
||||
model: db.patients,
|
||||
as: 'patient',
|
||||
|
||||
where: filter.patient ? {
|
||||
[Op.or]: [
|
||||
{ id: { [Op.in]: filter.patient.split('|').map(term => Utils.uuid(term)) } },
|
||||
{
|
||||
full_name: {
|
||||
[Op.or]: filter.patient.split('|').map(term => ({ [Op.iLike]: `%${term}%` }))
|
||||
}
|
||||
},
|
||||
]
|
||||
} : {},
|
||||
|
||||
},
|
||||
|
||||
{
|
||||
model: db.tumor_cases,
|
||||
as: 'tumor_case',
|
||||
|
||||
where: filter.tumor_case ? {
|
||||
[Op.or]: [
|
||||
{ id: { [Op.in]: filter.tumor_case.split('|').map(term => Utils.uuid(term)) } },
|
||||
{
|
||||
case_number: {
|
||||
[Op.or]: filter.tumor_case.split('|').map(term => ({ [Op.iLike]: `%${term}%` }))
|
||||
}
|
||||
},
|
||||
]
|
||||
} : {},
|
||||
|
||||
},
|
||||
|
||||
{
|
||||
model: db.users,
|
||||
as: 'assigned_user',
|
||||
|
||||
where: filter.assigned_user ? {
|
||||
[Op.or]: [
|
||||
{ id: { [Op.in]: filter.assigned_user.split('|').map(term => Utils.uuid(term)) } },
|
||||
{
|
||||
firstName: {
|
||||
[Op.or]: filter.assigned_user.split('|').map(term => ({ [Op.iLike]: `%${term}%` }))
|
||||
}
|
||||
},
|
||||
]
|
||||
} : {},
|
||||
|
||||
},
|
||||
|
||||
|
||||
|
||||
];
|
||||
|
||||
if (filter) {
|
||||
if (filter.id) {
|
||||
where = {
|
||||
...where,
|
||||
['id']: Utils.uuid(filter.id),
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
if (filter.location) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'appointments',
|
||||
'location',
|
||||
filter.location,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.reason) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'appointments',
|
||||
'reason',
|
||||
filter.reason,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.notes) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'appointments',
|
||||
'notes',
|
||||
filter.notes,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
if (filter.calendarStart && filter.calendarEnd) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.or]: [
|
||||
{
|
||||
start_datetime: {
|
||||
[Op.between]: [filter.calendarStart, filter.calendarEnd],
|
||||
},
|
||||
},
|
||||
{
|
||||
end_datetime: {
|
||||
[Op.between]: [filter.calendarStart, filter.calendarEnd],
|
||||
},
|
||||
},
|
||||
],
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
|
||||
if (filter.start_datetimeRange) {
|
||||
const [start, end] = filter.start_datetimeRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
start_datetime: {
|
||||
...where.start_datetime,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
start_datetime: {
|
||||
...where.start_datetime,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
|
||||
if (filter.end_datetimeRange) {
|
||||
const [start, end] = filter.end_datetimeRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
end_datetime: {
|
||||
...where.end_datetime,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
end_datetime: {
|
||||
...where.end_datetime,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
if (filter.active !== undefined) {
|
||||
where = {
|
||||
...where,
|
||||
active: filter.active === true || filter.active === 'true'
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
if (filter.appointment_type) {
|
||||
where = {
|
||||
...where,
|
||||
appointment_type: filter.appointment_type,
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.status) {
|
||||
where = {
|
||||
...where,
|
||||
status: filter.status,
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
if (filter.createdAtRange) {
|
||||
const [start, end] = filter.createdAtRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
['createdAt']: {
|
||||
...where.createdAt,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
['createdAt']: {
|
||||
...where.createdAt,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
const queryOptions = {
|
||||
where,
|
||||
include,
|
||||
distinct: true,
|
||||
order: filter.field && filter.sort
|
||||
? [[filter.field, filter.sort]]
|
||||
: [['createdAt', 'desc']],
|
||||
transaction: options?.transaction,
|
||||
logging: console.log
|
||||
};
|
||||
|
||||
if (!options?.countOnly) {
|
||||
queryOptions.limit = limit ? Number(limit) : undefined;
|
||||
queryOptions.offset = offset ? Number(offset) : undefined;
|
||||
}
|
||||
|
||||
try {
|
||||
const { rows, count } = await db.appointments.findAndCountAll(queryOptions);
|
||||
|
||||
return {
|
||||
rows: options?.countOnly ? [] : rows,
|
||||
count: count
|
||||
};
|
||||
} catch (error) {
|
||||
console.error('Error executing query:', error);
|
||||
throw error;
|
||||
}
|
||||
}
|
||||
|
||||
static async findAllAutocomplete(query, limit, offset, ) {
|
||||
let where = {};
|
||||
|
||||
|
||||
|
||||
if (query) {
|
||||
where = {
|
||||
[Op.or]: [
|
||||
{ ['id']: Utils.uuid(query) },
|
||||
Utils.ilike(
|
||||
'appointments',
|
||||
'location',
|
||||
query,
|
||||
),
|
||||
],
|
||||
};
|
||||
}
|
||||
|
||||
const records = await db.appointments.findAll({
|
||||
attributes: [ 'id', 'location' ],
|
||||
where,
|
||||
limit: limit ? Number(limit) : undefined,
|
||||
offset: offset ? Number(offset) : undefined,
|
||||
orderBy: [['location', 'ASC']],
|
||||
});
|
||||
|
||||
return records.map((record) => ({
|
||||
id: record.id,
|
||||
label: record.location,
|
||||
}));
|
||||
}
|
||||
|
||||
|
||||
};
|
||||
|
||||
581
backend/src/db/api/chemo_drug_items.js
Normal file
581
backend/src/db/api/chemo_drug_items.js
Normal file
@ -0,0 +1,581 @@
|
||||
|
||||
const db = require('../models');
|
||||
const FileDBApi = require('./file');
|
||||
const crypto = require('crypto');
|
||||
const Utils = require('../utils');
|
||||
|
||||
|
||||
|
||||
const Sequelize = db.Sequelize;
|
||||
const Op = Sequelize.Op;
|
||||
|
||||
module.exports = class Chemo_drug_itemsDBApi {
|
||||
|
||||
|
||||
|
||||
static async create(data, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const chemo_drug_items = await db.chemo_drug_items.create(
|
||||
{
|
||||
id: data.id || undefined,
|
||||
|
||||
drug_name: data.drug_name
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
dose: data.dose
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
dose_unit: data.dose_unit
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
calculated_bsa: data.calculated_bsa
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
dose_per_m2: data.dose_per_m2
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
diluent_volume_ml: data.diluent_volume_ml
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
administration_instructions: data.administration_instructions
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
importHash: data.importHash || null,
|
||||
createdById: currentUser.id,
|
||||
updatedById: currentUser.id,
|
||||
},
|
||||
{ transaction },
|
||||
);
|
||||
|
||||
|
||||
await chemo_drug_items.setChemo_order( data.chemo_order || null, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
return chemo_drug_items;
|
||||
}
|
||||
|
||||
|
||||
static async bulkImport(data, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
// Prepare data - wrapping individual data transformations in a map() method
|
||||
const chemo_drug_itemsData = data.map((item, index) => ({
|
||||
id: item.id || undefined,
|
||||
|
||||
drug_name: item.drug_name
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
dose: item.dose
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
dose_unit: item.dose_unit
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
calculated_bsa: item.calculated_bsa
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
dose_per_m2: item.dose_per_m2
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
diluent_volume_ml: item.diluent_volume_ml
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
administration_instructions: item.administration_instructions
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
importHash: item.importHash || null,
|
||||
createdById: currentUser.id,
|
||||
updatedById: currentUser.id,
|
||||
createdAt: new Date(Date.now() + index * 1000),
|
||||
}));
|
||||
|
||||
// Bulk create items
|
||||
const chemo_drug_items = await db.chemo_drug_items.bulkCreate(chemo_drug_itemsData, { transaction });
|
||||
|
||||
// For each item created, replace relation files
|
||||
|
||||
|
||||
return chemo_drug_items;
|
||||
}
|
||||
|
||||
static async update(id, data, options) {
|
||||
const currentUser = (options && options.currentUser) || {id: null};
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
|
||||
const chemo_drug_items = await db.chemo_drug_items.findByPk(id, {}, {transaction});
|
||||
|
||||
|
||||
|
||||
|
||||
const updatePayload = {};
|
||||
|
||||
if (data.drug_name !== undefined) updatePayload.drug_name = data.drug_name;
|
||||
|
||||
|
||||
if (data.dose !== undefined) updatePayload.dose = data.dose;
|
||||
|
||||
|
||||
if (data.dose_unit !== undefined) updatePayload.dose_unit = data.dose_unit;
|
||||
|
||||
|
||||
if (data.calculated_bsa !== undefined) updatePayload.calculated_bsa = data.calculated_bsa;
|
||||
|
||||
|
||||
if (data.dose_per_m2 !== undefined) updatePayload.dose_per_m2 = data.dose_per_m2;
|
||||
|
||||
|
||||
if (data.diluent_volume_ml !== undefined) updatePayload.diluent_volume_ml = data.diluent_volume_ml;
|
||||
|
||||
|
||||
if (data.administration_instructions !== undefined) updatePayload.administration_instructions = data.administration_instructions;
|
||||
|
||||
|
||||
updatePayload.updatedById = currentUser.id;
|
||||
|
||||
await chemo_drug_items.update(updatePayload, {transaction});
|
||||
|
||||
|
||||
|
||||
if (data.chemo_order !== undefined) {
|
||||
await chemo_drug_items.setChemo_order(
|
||||
|
||||
data.chemo_order,
|
||||
|
||||
{ transaction }
|
||||
);
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
return chemo_drug_items;
|
||||
}
|
||||
|
||||
static async deleteByIds(ids, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const chemo_drug_items = await db.chemo_drug_items.findAll({
|
||||
where: {
|
||||
id: {
|
||||
[Op.in]: ids,
|
||||
},
|
||||
},
|
||||
transaction,
|
||||
});
|
||||
|
||||
await db.sequelize.transaction(async (transaction) => {
|
||||
for (const record of chemo_drug_items) {
|
||||
await record.update(
|
||||
{deletedBy: currentUser.id},
|
||||
{transaction}
|
||||
);
|
||||
}
|
||||
for (const record of chemo_drug_items) {
|
||||
await record.destroy({transaction});
|
||||
}
|
||||
});
|
||||
|
||||
|
||||
return chemo_drug_items;
|
||||
}
|
||||
|
||||
static async remove(id, options) {
|
||||
const currentUser = (options && options.currentUser) || {id: null};
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const chemo_drug_items = await db.chemo_drug_items.findByPk(id, options);
|
||||
|
||||
await chemo_drug_items.update({
|
||||
deletedBy: currentUser.id
|
||||
}, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
await chemo_drug_items.destroy({
|
||||
transaction
|
||||
});
|
||||
|
||||
return chemo_drug_items;
|
||||
}
|
||||
|
||||
static async findBy(where, options) {
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const chemo_drug_items = await db.chemo_drug_items.findOne(
|
||||
{ where },
|
||||
{ transaction },
|
||||
);
|
||||
|
||||
if (!chemo_drug_items) {
|
||||
return chemo_drug_items;
|
||||
}
|
||||
|
||||
const output = chemo_drug_items.get({plain: true});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
output.chemo_order = await chemo_drug_items.getChemo_order({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
|
||||
return output;
|
||||
}
|
||||
|
||||
static async findAll(
|
||||
filter,
|
||||
options
|
||||
) {
|
||||
const limit = filter.limit || 0;
|
||||
let offset = 0;
|
||||
let where = {};
|
||||
const currentPage = +filter.page;
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
offset = currentPage * limit;
|
||||
|
||||
const orderBy = null;
|
||||
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
let include = [
|
||||
|
||||
{
|
||||
model: db.chemotherapy_orders,
|
||||
as: 'chemo_order',
|
||||
|
||||
where: filter.chemo_order ? {
|
||||
[Op.or]: [
|
||||
{ id: { [Op.in]: filter.chemo_order.split('|').map(term => Utils.uuid(term)) } },
|
||||
{
|
||||
notes: {
|
||||
[Op.or]: filter.chemo_order.split('|').map(term => ({ [Op.iLike]: `%${term}%` }))
|
||||
}
|
||||
},
|
||||
]
|
||||
} : {},
|
||||
|
||||
},
|
||||
|
||||
|
||||
|
||||
];
|
||||
|
||||
if (filter) {
|
||||
if (filter.id) {
|
||||
where = {
|
||||
...where,
|
||||
['id']: Utils.uuid(filter.id),
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
if (filter.drug_name) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'chemo_drug_items',
|
||||
'drug_name',
|
||||
filter.drug_name,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.dose_unit) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'chemo_drug_items',
|
||||
'dose_unit',
|
||||
filter.dose_unit,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.administration_instructions) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'chemo_drug_items',
|
||||
'administration_instructions',
|
||||
filter.administration_instructions,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
if (filter.doseRange) {
|
||||
const [start, end] = filter.doseRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
dose: {
|
||||
...where.dose,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
dose: {
|
||||
...where.dose,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
|
||||
if (filter.calculated_bsaRange) {
|
||||
const [start, end] = filter.calculated_bsaRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
calculated_bsa: {
|
||||
...where.calculated_bsa,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
calculated_bsa: {
|
||||
...where.calculated_bsa,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
|
||||
if (filter.dose_per_m2Range) {
|
||||
const [start, end] = filter.dose_per_m2Range;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
dose_per_m2: {
|
||||
...where.dose_per_m2,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
dose_per_m2: {
|
||||
...where.dose_per_m2,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
|
||||
if (filter.diluent_volume_mlRange) {
|
||||
const [start, end] = filter.diluent_volume_mlRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
diluent_volume_ml: {
|
||||
...where.diluent_volume_ml,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
diluent_volume_ml: {
|
||||
...where.diluent_volume_ml,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
if (filter.active !== undefined) {
|
||||
where = {
|
||||
...where,
|
||||
active: filter.active === true || filter.active === 'true'
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
if (filter.createdAtRange) {
|
||||
const [start, end] = filter.createdAtRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
['createdAt']: {
|
||||
...where.createdAt,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
['createdAt']: {
|
||||
...where.createdAt,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
const queryOptions = {
|
||||
where,
|
||||
include,
|
||||
distinct: true,
|
||||
order: filter.field && filter.sort
|
||||
? [[filter.field, filter.sort]]
|
||||
: [['createdAt', 'desc']],
|
||||
transaction: options?.transaction,
|
||||
logging: console.log
|
||||
};
|
||||
|
||||
if (!options?.countOnly) {
|
||||
queryOptions.limit = limit ? Number(limit) : undefined;
|
||||
queryOptions.offset = offset ? Number(offset) : undefined;
|
||||
}
|
||||
|
||||
try {
|
||||
const { rows, count } = await db.chemo_drug_items.findAndCountAll(queryOptions);
|
||||
|
||||
return {
|
||||
rows: options?.countOnly ? [] : rows,
|
||||
count: count
|
||||
};
|
||||
} catch (error) {
|
||||
console.error('Error executing query:', error);
|
||||
throw error;
|
||||
}
|
||||
}
|
||||
|
||||
static async findAllAutocomplete(query, limit, offset, ) {
|
||||
let where = {};
|
||||
|
||||
|
||||
|
||||
if (query) {
|
||||
where = {
|
||||
[Op.or]: [
|
||||
{ ['id']: Utils.uuid(query) },
|
||||
Utils.ilike(
|
||||
'chemo_drug_items',
|
||||
'drug_name',
|
||||
query,
|
||||
),
|
||||
],
|
||||
};
|
||||
}
|
||||
|
||||
const records = await db.chemo_drug_items.findAll({
|
||||
attributes: [ 'id', 'drug_name' ],
|
||||
where,
|
||||
limit: limit ? Number(limit) : undefined,
|
||||
offset: offset ? Number(offset) : undefined,
|
||||
orderBy: [['drug_name', 'ASC']],
|
||||
});
|
||||
|
||||
return records.map((record) => ({
|
||||
id: record.id,
|
||||
label: record.drug_name,
|
||||
}));
|
||||
}
|
||||
|
||||
|
||||
};
|
||||
|
||||
605
backend/src/db/api/chemotherapy_orders.js
Normal file
605
backend/src/db/api/chemotherapy_orders.js
Normal file
@ -0,0 +1,605 @@
|
||||
|
||||
const db = require('../models');
|
||||
const FileDBApi = require('./file');
|
||||
const crypto = require('crypto');
|
||||
const Utils = require('../utils');
|
||||
|
||||
|
||||
|
||||
const Sequelize = db.Sequelize;
|
||||
const Op = Sequelize.Op;
|
||||
|
||||
module.exports = class Chemotherapy_ordersDBApi {
|
||||
|
||||
|
||||
|
||||
static async create(data, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const chemotherapy_orders = await db.chemotherapy_orders.create(
|
||||
{
|
||||
id: data.id || undefined,
|
||||
|
||||
cycle_number: data.cycle_number
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
day_in_cycle: data.day_in_cycle
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
planned_datetime: data.planned_datetime
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
route: data.route
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
status: data.status
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
pre_medications: data.pre_medications
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
notes: data.notes
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
importHash: data.importHash || null,
|
||||
createdById: currentUser.id,
|
||||
updatedById: currentUser.id,
|
||||
},
|
||||
{ transaction },
|
||||
);
|
||||
|
||||
|
||||
await chemotherapy_orders.setProtocol( data.protocol || null, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
await chemotherapy_orders.setResponsible_nurse( data.responsible_nurse || null, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
return chemotherapy_orders;
|
||||
}
|
||||
|
||||
|
||||
static async bulkImport(data, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
// Prepare data - wrapping individual data transformations in a map() method
|
||||
const chemotherapy_ordersData = data.map((item, index) => ({
|
||||
id: item.id || undefined,
|
||||
|
||||
cycle_number: item.cycle_number
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
day_in_cycle: item.day_in_cycle
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
planned_datetime: item.planned_datetime
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
route: item.route
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
status: item.status
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
pre_medications: item.pre_medications
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
notes: item.notes
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
importHash: item.importHash || null,
|
||||
createdById: currentUser.id,
|
||||
updatedById: currentUser.id,
|
||||
createdAt: new Date(Date.now() + index * 1000),
|
||||
}));
|
||||
|
||||
// Bulk create items
|
||||
const chemotherapy_orders = await db.chemotherapy_orders.bulkCreate(chemotherapy_ordersData, { transaction });
|
||||
|
||||
// For each item created, replace relation files
|
||||
|
||||
|
||||
return chemotherapy_orders;
|
||||
}
|
||||
|
||||
static async update(id, data, options) {
|
||||
const currentUser = (options && options.currentUser) || {id: null};
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
|
||||
const chemotherapy_orders = await db.chemotherapy_orders.findByPk(id, {}, {transaction});
|
||||
|
||||
|
||||
|
||||
|
||||
const updatePayload = {};
|
||||
|
||||
if (data.cycle_number !== undefined) updatePayload.cycle_number = data.cycle_number;
|
||||
|
||||
|
||||
if (data.day_in_cycle !== undefined) updatePayload.day_in_cycle = data.day_in_cycle;
|
||||
|
||||
|
||||
if (data.planned_datetime !== undefined) updatePayload.planned_datetime = data.planned_datetime;
|
||||
|
||||
|
||||
if (data.route !== undefined) updatePayload.route = data.route;
|
||||
|
||||
|
||||
if (data.status !== undefined) updatePayload.status = data.status;
|
||||
|
||||
|
||||
if (data.pre_medications !== undefined) updatePayload.pre_medications = data.pre_medications;
|
||||
|
||||
|
||||
if (data.notes !== undefined) updatePayload.notes = data.notes;
|
||||
|
||||
|
||||
updatePayload.updatedById = currentUser.id;
|
||||
|
||||
await chemotherapy_orders.update(updatePayload, {transaction});
|
||||
|
||||
|
||||
|
||||
if (data.protocol !== undefined) {
|
||||
await chemotherapy_orders.setProtocol(
|
||||
|
||||
data.protocol,
|
||||
|
||||
{ transaction }
|
||||
);
|
||||
}
|
||||
|
||||
if (data.responsible_nurse !== undefined) {
|
||||
await chemotherapy_orders.setResponsible_nurse(
|
||||
|
||||
data.responsible_nurse,
|
||||
|
||||
{ transaction }
|
||||
);
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
return chemotherapy_orders;
|
||||
}
|
||||
|
||||
static async deleteByIds(ids, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const chemotherapy_orders = await db.chemotherapy_orders.findAll({
|
||||
where: {
|
||||
id: {
|
||||
[Op.in]: ids,
|
||||
},
|
||||
},
|
||||
transaction,
|
||||
});
|
||||
|
||||
await db.sequelize.transaction(async (transaction) => {
|
||||
for (const record of chemotherapy_orders) {
|
||||
await record.update(
|
||||
{deletedBy: currentUser.id},
|
||||
{transaction}
|
||||
);
|
||||
}
|
||||
for (const record of chemotherapy_orders) {
|
||||
await record.destroy({transaction});
|
||||
}
|
||||
});
|
||||
|
||||
|
||||
return chemotherapy_orders;
|
||||
}
|
||||
|
||||
static async remove(id, options) {
|
||||
const currentUser = (options && options.currentUser) || {id: null};
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const chemotherapy_orders = await db.chemotherapy_orders.findByPk(id, options);
|
||||
|
||||
await chemotherapy_orders.update({
|
||||
deletedBy: currentUser.id
|
||||
}, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
await chemotherapy_orders.destroy({
|
||||
transaction
|
||||
});
|
||||
|
||||
return chemotherapy_orders;
|
||||
}
|
||||
|
||||
static async findBy(where, options) {
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const chemotherapy_orders = await db.chemotherapy_orders.findOne(
|
||||
{ where },
|
||||
{ transaction },
|
||||
);
|
||||
|
||||
if (!chemotherapy_orders) {
|
||||
return chemotherapy_orders;
|
||||
}
|
||||
|
||||
const output = chemotherapy_orders.get({plain: true});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
output.chemo_drug_items_chemo_order = await chemotherapy_orders.getChemo_drug_items_chemo_order({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
output.medication_administrations_chemo_order = await chemotherapy_orders.getMedication_administrations_chemo_order({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
output.protocol = await chemotherapy_orders.getProtocol({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
output.responsible_nurse = await chemotherapy_orders.getResponsible_nurse({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
|
||||
return output;
|
||||
}
|
||||
|
||||
static async findAll(
|
||||
filter,
|
||||
options
|
||||
) {
|
||||
const limit = filter.limit || 0;
|
||||
let offset = 0;
|
||||
let where = {};
|
||||
const currentPage = +filter.page;
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
offset = currentPage * limit;
|
||||
|
||||
const orderBy = null;
|
||||
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
let include = [
|
||||
|
||||
{
|
||||
model: db.treatment_protocols,
|
||||
as: 'protocol',
|
||||
|
||||
where: filter.protocol ? {
|
||||
[Op.or]: [
|
||||
{ id: { [Op.in]: filter.protocol.split('|').map(term => Utils.uuid(term)) } },
|
||||
{
|
||||
name: {
|
||||
[Op.or]: filter.protocol.split('|').map(term => ({ [Op.iLike]: `%${term}%` }))
|
||||
}
|
||||
},
|
||||
]
|
||||
} : {},
|
||||
|
||||
},
|
||||
|
||||
{
|
||||
model: db.users,
|
||||
as: 'responsible_nurse',
|
||||
|
||||
where: filter.responsible_nurse ? {
|
||||
[Op.or]: [
|
||||
{ id: { [Op.in]: filter.responsible_nurse.split('|').map(term => Utils.uuid(term)) } },
|
||||
{
|
||||
firstName: {
|
||||
[Op.or]: filter.responsible_nurse.split('|').map(term => ({ [Op.iLike]: `%${term}%` }))
|
||||
}
|
||||
},
|
||||
]
|
||||
} : {},
|
||||
|
||||
},
|
||||
|
||||
|
||||
|
||||
];
|
||||
|
||||
if (filter) {
|
||||
if (filter.id) {
|
||||
where = {
|
||||
...where,
|
||||
['id']: Utils.uuid(filter.id),
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
if (filter.pre_medications) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'chemotherapy_orders',
|
||||
'pre_medications',
|
||||
filter.pre_medications,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.notes) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'chemotherapy_orders',
|
||||
'notes',
|
||||
filter.notes,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
if (filter.cycle_numberRange) {
|
||||
const [start, end] = filter.cycle_numberRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
cycle_number: {
|
||||
...where.cycle_number,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
cycle_number: {
|
||||
...where.cycle_number,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
|
||||
if (filter.day_in_cycleRange) {
|
||||
const [start, end] = filter.day_in_cycleRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
day_in_cycle: {
|
||||
...where.day_in_cycle,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
day_in_cycle: {
|
||||
...where.day_in_cycle,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
|
||||
if (filter.planned_datetimeRange) {
|
||||
const [start, end] = filter.planned_datetimeRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
planned_datetime: {
|
||||
...where.planned_datetime,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
planned_datetime: {
|
||||
...where.planned_datetime,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
if (filter.active !== undefined) {
|
||||
where = {
|
||||
...where,
|
||||
active: filter.active === true || filter.active === 'true'
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
if (filter.route) {
|
||||
where = {
|
||||
...where,
|
||||
route: filter.route,
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.status) {
|
||||
where = {
|
||||
...where,
|
||||
status: filter.status,
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
if (filter.createdAtRange) {
|
||||
const [start, end] = filter.createdAtRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
['createdAt']: {
|
||||
...where.createdAt,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
['createdAt']: {
|
||||
...where.createdAt,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
const queryOptions = {
|
||||
where,
|
||||
include,
|
||||
distinct: true,
|
||||
order: filter.field && filter.sort
|
||||
? [[filter.field, filter.sort]]
|
||||
: [['createdAt', 'desc']],
|
||||
transaction: options?.transaction,
|
||||
logging: console.log
|
||||
};
|
||||
|
||||
if (!options?.countOnly) {
|
||||
queryOptions.limit = limit ? Number(limit) : undefined;
|
||||
queryOptions.offset = offset ? Number(offset) : undefined;
|
||||
}
|
||||
|
||||
try {
|
||||
const { rows, count } = await db.chemotherapy_orders.findAndCountAll(queryOptions);
|
||||
|
||||
return {
|
||||
rows: options?.countOnly ? [] : rows,
|
||||
count: count
|
||||
};
|
||||
} catch (error) {
|
||||
console.error('Error executing query:', error);
|
||||
throw error;
|
||||
}
|
||||
}
|
||||
|
||||
static async findAllAutocomplete(query, limit, offset, ) {
|
||||
let where = {};
|
||||
|
||||
|
||||
|
||||
if (query) {
|
||||
where = {
|
||||
[Op.or]: [
|
||||
{ ['id']: Utils.uuid(query) },
|
||||
Utils.ilike(
|
||||
'chemotherapy_orders',
|
||||
'notes',
|
||||
query,
|
||||
),
|
||||
],
|
||||
};
|
||||
}
|
||||
|
||||
const records = await db.chemotherapy_orders.findAll({
|
||||
attributes: [ 'id', 'notes' ],
|
||||
where,
|
||||
limit: limit ? Number(limit) : undefined,
|
||||
offset: offset ? Number(offset) : undefined,
|
||||
orderBy: [['notes', 'ASC']],
|
||||
});
|
||||
|
||||
return records.map((record) => ({
|
||||
id: record.id,
|
||||
label: record.notes,
|
||||
}));
|
||||
}
|
||||
|
||||
|
||||
};
|
||||
|
||||
768
backend/src/db/api/clinical_visits.js
Normal file
768
backend/src/db/api/clinical_visits.js
Normal file
@ -0,0 +1,768 @@
|
||||
|
||||
const db = require('../models');
|
||||
const FileDBApi = require('./file');
|
||||
const crypto = require('crypto');
|
||||
const Utils = require('../utils');
|
||||
|
||||
|
||||
|
||||
const Sequelize = db.Sequelize;
|
||||
const Op = Sequelize.Op;
|
||||
|
||||
module.exports = class Clinical_visitsDBApi {
|
||||
|
||||
|
||||
|
||||
static async create(data, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const clinical_visits = await db.clinical_visits.create(
|
||||
{
|
||||
id: data.id || undefined,
|
||||
|
||||
visit_datetime: data.visit_datetime
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
visit_type: data.visit_type
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
subjective: data.subjective
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
objective: data.objective
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
assessment: data.assessment
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
plan: data.plan
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
weight_kg: data.weight_kg
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
height_cm: data.height_cm
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
bsa_m2: data.bsa_m2
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
toxicity_notes: data.toxicity_notes
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
importHash: data.importHash || null,
|
||||
createdById: currentUser.id,
|
||||
updatedById: currentUser.id,
|
||||
},
|
||||
{ transaction },
|
||||
);
|
||||
|
||||
|
||||
await clinical_visits.setPatient( data.patient || null, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
await clinical_visits.setTumor_case( data.tumor_case || null, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
await clinical_visits.setAppointment( data.appointment || null, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
await clinical_visits.setProvider_user( data.provider_user || null, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
return clinical_visits;
|
||||
}
|
||||
|
||||
|
||||
static async bulkImport(data, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
// Prepare data - wrapping individual data transformations in a map() method
|
||||
const clinical_visitsData = data.map((item, index) => ({
|
||||
id: item.id || undefined,
|
||||
|
||||
visit_datetime: item.visit_datetime
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
visit_type: item.visit_type
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
subjective: item.subjective
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
objective: item.objective
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
assessment: item.assessment
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
plan: item.plan
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
weight_kg: item.weight_kg
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
height_cm: item.height_cm
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
bsa_m2: item.bsa_m2
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
toxicity_notes: item.toxicity_notes
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
importHash: item.importHash || null,
|
||||
createdById: currentUser.id,
|
||||
updatedById: currentUser.id,
|
||||
createdAt: new Date(Date.now() + index * 1000),
|
||||
}));
|
||||
|
||||
// Bulk create items
|
||||
const clinical_visits = await db.clinical_visits.bulkCreate(clinical_visitsData, { transaction });
|
||||
|
||||
// For each item created, replace relation files
|
||||
|
||||
|
||||
return clinical_visits;
|
||||
}
|
||||
|
||||
static async update(id, data, options) {
|
||||
const currentUser = (options && options.currentUser) || {id: null};
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
|
||||
const clinical_visits = await db.clinical_visits.findByPk(id, {}, {transaction});
|
||||
|
||||
|
||||
|
||||
|
||||
const updatePayload = {};
|
||||
|
||||
if (data.visit_datetime !== undefined) updatePayload.visit_datetime = data.visit_datetime;
|
||||
|
||||
|
||||
if (data.visit_type !== undefined) updatePayload.visit_type = data.visit_type;
|
||||
|
||||
|
||||
if (data.subjective !== undefined) updatePayload.subjective = data.subjective;
|
||||
|
||||
|
||||
if (data.objective !== undefined) updatePayload.objective = data.objective;
|
||||
|
||||
|
||||
if (data.assessment !== undefined) updatePayload.assessment = data.assessment;
|
||||
|
||||
|
||||
if (data.plan !== undefined) updatePayload.plan = data.plan;
|
||||
|
||||
|
||||
if (data.weight_kg !== undefined) updatePayload.weight_kg = data.weight_kg;
|
||||
|
||||
|
||||
if (data.height_cm !== undefined) updatePayload.height_cm = data.height_cm;
|
||||
|
||||
|
||||
if (data.bsa_m2 !== undefined) updatePayload.bsa_m2 = data.bsa_m2;
|
||||
|
||||
|
||||
if (data.toxicity_notes !== undefined) updatePayload.toxicity_notes = data.toxicity_notes;
|
||||
|
||||
|
||||
updatePayload.updatedById = currentUser.id;
|
||||
|
||||
await clinical_visits.update(updatePayload, {transaction});
|
||||
|
||||
|
||||
|
||||
if (data.patient !== undefined) {
|
||||
await clinical_visits.setPatient(
|
||||
|
||||
data.patient,
|
||||
|
||||
{ transaction }
|
||||
);
|
||||
}
|
||||
|
||||
if (data.tumor_case !== undefined) {
|
||||
await clinical_visits.setTumor_case(
|
||||
|
||||
data.tumor_case,
|
||||
|
||||
{ transaction }
|
||||
);
|
||||
}
|
||||
|
||||
if (data.appointment !== undefined) {
|
||||
await clinical_visits.setAppointment(
|
||||
|
||||
data.appointment,
|
||||
|
||||
{ transaction }
|
||||
);
|
||||
}
|
||||
|
||||
if (data.provider_user !== undefined) {
|
||||
await clinical_visits.setProvider_user(
|
||||
|
||||
data.provider_user,
|
||||
|
||||
{ transaction }
|
||||
);
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
return clinical_visits;
|
||||
}
|
||||
|
||||
static async deleteByIds(ids, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const clinical_visits = await db.clinical_visits.findAll({
|
||||
where: {
|
||||
id: {
|
||||
[Op.in]: ids,
|
||||
},
|
||||
},
|
||||
transaction,
|
||||
});
|
||||
|
||||
await db.sequelize.transaction(async (transaction) => {
|
||||
for (const record of clinical_visits) {
|
||||
await record.update(
|
||||
{deletedBy: currentUser.id},
|
||||
{transaction}
|
||||
);
|
||||
}
|
||||
for (const record of clinical_visits) {
|
||||
await record.destroy({transaction});
|
||||
}
|
||||
});
|
||||
|
||||
|
||||
return clinical_visits;
|
||||
}
|
||||
|
||||
static async remove(id, options) {
|
||||
const currentUser = (options && options.currentUser) || {id: null};
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const clinical_visits = await db.clinical_visits.findByPk(id, options);
|
||||
|
||||
await clinical_visits.update({
|
||||
deletedBy: currentUser.id
|
||||
}, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
await clinical_visits.destroy({
|
||||
transaction
|
||||
});
|
||||
|
||||
return clinical_visits;
|
||||
}
|
||||
|
||||
static async findBy(where, options) {
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const clinical_visits = await db.clinical_visits.findOne(
|
||||
{ where },
|
||||
{ transaction },
|
||||
);
|
||||
|
||||
if (!clinical_visits) {
|
||||
return clinical_visits;
|
||||
}
|
||||
|
||||
const output = clinical_visits.get({plain: true});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
output.lab_orders_visit = await clinical_visits.getLab_orders_visit({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
output.imaging_orders_visit = await clinical_visits.getImaging_orders_visit({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
output.patient = await clinical_visits.getPatient({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
output.tumor_case = await clinical_visits.getTumor_case({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
output.appointment = await clinical_visits.getAppointment({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
output.provider_user = await clinical_visits.getProvider_user({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
|
||||
return output;
|
||||
}
|
||||
|
||||
static async findAll(
|
||||
filter,
|
||||
options
|
||||
) {
|
||||
const limit = filter.limit || 0;
|
||||
let offset = 0;
|
||||
let where = {};
|
||||
const currentPage = +filter.page;
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
offset = currentPage * limit;
|
||||
|
||||
const orderBy = null;
|
||||
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
let include = [
|
||||
|
||||
{
|
||||
model: db.patients,
|
||||
as: 'patient',
|
||||
|
||||
where: filter.patient ? {
|
||||
[Op.or]: [
|
||||
{ id: { [Op.in]: filter.patient.split('|').map(term => Utils.uuid(term)) } },
|
||||
{
|
||||
full_name: {
|
||||
[Op.or]: filter.patient.split('|').map(term => ({ [Op.iLike]: `%${term}%` }))
|
||||
}
|
||||
},
|
||||
]
|
||||
} : {},
|
||||
|
||||
},
|
||||
|
||||
{
|
||||
model: db.tumor_cases,
|
||||
as: 'tumor_case',
|
||||
|
||||
where: filter.tumor_case ? {
|
||||
[Op.or]: [
|
||||
{ id: { [Op.in]: filter.tumor_case.split('|').map(term => Utils.uuid(term)) } },
|
||||
{
|
||||
case_number: {
|
||||
[Op.or]: filter.tumor_case.split('|').map(term => ({ [Op.iLike]: `%${term}%` }))
|
||||
}
|
||||
},
|
||||
]
|
||||
} : {},
|
||||
|
||||
},
|
||||
|
||||
{
|
||||
model: db.appointments,
|
||||
as: 'appointment',
|
||||
|
||||
where: filter.appointment ? {
|
||||
[Op.or]: [
|
||||
{ id: { [Op.in]: filter.appointment.split('|').map(term => Utils.uuid(term)) } },
|
||||
{
|
||||
location: {
|
||||
[Op.or]: filter.appointment.split('|').map(term => ({ [Op.iLike]: `%${term}%` }))
|
||||
}
|
||||
},
|
||||
]
|
||||
} : {},
|
||||
|
||||
},
|
||||
|
||||
{
|
||||
model: db.users,
|
||||
as: 'provider_user',
|
||||
|
||||
where: filter.provider_user ? {
|
||||
[Op.or]: [
|
||||
{ id: { [Op.in]: filter.provider_user.split('|').map(term => Utils.uuid(term)) } },
|
||||
{
|
||||
firstName: {
|
||||
[Op.or]: filter.provider_user.split('|').map(term => ({ [Op.iLike]: `%${term}%` }))
|
||||
}
|
||||
},
|
||||
]
|
||||
} : {},
|
||||
|
||||
},
|
||||
|
||||
|
||||
|
||||
];
|
||||
|
||||
if (filter) {
|
||||
if (filter.id) {
|
||||
where = {
|
||||
...where,
|
||||
['id']: Utils.uuid(filter.id),
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
if (filter.subjective) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'clinical_visits',
|
||||
'subjective',
|
||||
filter.subjective,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.objective) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'clinical_visits',
|
||||
'objective',
|
||||
filter.objective,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.assessment) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'clinical_visits',
|
||||
'assessment',
|
||||
filter.assessment,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.plan) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'clinical_visits',
|
||||
'plan',
|
||||
filter.plan,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.toxicity_notes) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'clinical_visits',
|
||||
'toxicity_notes',
|
||||
filter.toxicity_notes,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
if (filter.visit_datetimeRange) {
|
||||
const [start, end] = filter.visit_datetimeRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
visit_datetime: {
|
||||
...where.visit_datetime,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
visit_datetime: {
|
||||
...where.visit_datetime,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
|
||||
if (filter.weight_kgRange) {
|
||||
const [start, end] = filter.weight_kgRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
weight_kg: {
|
||||
...where.weight_kg,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
weight_kg: {
|
||||
...where.weight_kg,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
|
||||
if (filter.height_cmRange) {
|
||||
const [start, end] = filter.height_cmRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
height_cm: {
|
||||
...where.height_cm,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
height_cm: {
|
||||
...where.height_cm,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
|
||||
if (filter.bsa_m2Range) {
|
||||
const [start, end] = filter.bsa_m2Range;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
bsa_m2: {
|
||||
...where.bsa_m2,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
bsa_m2: {
|
||||
...where.bsa_m2,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
if (filter.active !== undefined) {
|
||||
where = {
|
||||
...where,
|
||||
active: filter.active === true || filter.active === 'true'
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
if (filter.visit_type) {
|
||||
where = {
|
||||
...where,
|
||||
visit_type: filter.visit_type,
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
if (filter.createdAtRange) {
|
||||
const [start, end] = filter.createdAtRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
['createdAt']: {
|
||||
...where.createdAt,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
['createdAt']: {
|
||||
...where.createdAt,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
const queryOptions = {
|
||||
where,
|
||||
include,
|
||||
distinct: true,
|
||||
order: filter.field && filter.sort
|
||||
? [[filter.field, filter.sort]]
|
||||
: [['createdAt', 'desc']],
|
||||
transaction: options?.transaction,
|
||||
logging: console.log
|
||||
};
|
||||
|
||||
if (!options?.countOnly) {
|
||||
queryOptions.limit = limit ? Number(limit) : undefined;
|
||||
queryOptions.offset = offset ? Number(offset) : undefined;
|
||||
}
|
||||
|
||||
try {
|
||||
const { rows, count } = await db.clinical_visits.findAndCountAll(queryOptions);
|
||||
|
||||
return {
|
||||
rows: options?.countOnly ? [] : rows,
|
||||
count: count
|
||||
};
|
||||
} catch (error) {
|
||||
console.error('Error executing query:', error);
|
||||
throw error;
|
||||
}
|
||||
}
|
||||
|
||||
static async findAllAutocomplete(query, limit, offset, ) {
|
||||
let where = {};
|
||||
|
||||
|
||||
|
||||
if (query) {
|
||||
where = {
|
||||
[Op.or]: [
|
||||
{ ['id']: Utils.uuid(query) },
|
||||
Utils.ilike(
|
||||
'clinical_visits',
|
||||
'visit_type',
|
||||
query,
|
||||
),
|
||||
],
|
||||
};
|
||||
}
|
||||
|
||||
const records = await db.clinical_visits.findAll({
|
||||
attributes: [ 'id', 'visit_type' ],
|
||||
where,
|
||||
limit: limit ? Number(limit) : undefined,
|
||||
offset: offset ? Number(offset) : undefined,
|
||||
orderBy: [['visit_type', 'ASC']],
|
||||
});
|
||||
|
||||
return records.map((record) => ({
|
||||
id: record.id,
|
||||
label: record.visit_type,
|
||||
}));
|
||||
}
|
||||
|
||||
|
||||
};
|
||||
|
||||
461
backend/src/db/api/departments.js
Normal file
461
backend/src/db/api/departments.js
Normal file
@ -0,0 +1,461 @@
|
||||
|
||||
const db = require('../models');
|
||||
const FileDBApi = require('./file');
|
||||
const crypto = require('crypto');
|
||||
const Utils = require('../utils');
|
||||
|
||||
|
||||
|
||||
const Sequelize = db.Sequelize;
|
||||
const Op = Sequelize.Op;
|
||||
|
||||
module.exports = class DepartmentsDBApi {
|
||||
|
||||
|
||||
|
||||
static async create(data, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const departments = await db.departments.create(
|
||||
{
|
||||
id: data.id || undefined,
|
||||
|
||||
name: data.name
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
code: data.code
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
location: data.location
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
phone: data.phone
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
importHash: data.importHash || null,
|
||||
createdById: currentUser.id,
|
||||
updatedById: currentUser.id,
|
||||
},
|
||||
{ transaction },
|
||||
);
|
||||
|
||||
|
||||
await departments.setHead_user( data.head_user || null, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
return departments;
|
||||
}
|
||||
|
||||
|
||||
static async bulkImport(data, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
// Prepare data - wrapping individual data transformations in a map() method
|
||||
const departmentsData = data.map((item, index) => ({
|
||||
id: item.id || undefined,
|
||||
|
||||
name: item.name
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
code: item.code
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
location: item.location
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
phone: item.phone
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
importHash: item.importHash || null,
|
||||
createdById: currentUser.id,
|
||||
updatedById: currentUser.id,
|
||||
createdAt: new Date(Date.now() + index * 1000),
|
||||
}));
|
||||
|
||||
// Bulk create items
|
||||
const departments = await db.departments.bulkCreate(departmentsData, { transaction });
|
||||
|
||||
// For each item created, replace relation files
|
||||
|
||||
|
||||
return departments;
|
||||
}
|
||||
|
||||
static async update(id, data, options) {
|
||||
const currentUser = (options && options.currentUser) || {id: null};
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
|
||||
const departments = await db.departments.findByPk(id, {}, {transaction});
|
||||
|
||||
|
||||
|
||||
|
||||
const updatePayload = {};
|
||||
|
||||
if (data.name !== undefined) updatePayload.name = data.name;
|
||||
|
||||
|
||||
if (data.code !== undefined) updatePayload.code = data.code;
|
||||
|
||||
|
||||
if (data.location !== undefined) updatePayload.location = data.location;
|
||||
|
||||
|
||||
if (data.phone !== undefined) updatePayload.phone = data.phone;
|
||||
|
||||
|
||||
updatePayload.updatedById = currentUser.id;
|
||||
|
||||
await departments.update(updatePayload, {transaction});
|
||||
|
||||
|
||||
|
||||
if (data.head_user !== undefined) {
|
||||
await departments.setHead_user(
|
||||
|
||||
data.head_user,
|
||||
|
||||
{ transaction }
|
||||
);
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
return departments;
|
||||
}
|
||||
|
||||
static async deleteByIds(ids, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const departments = await db.departments.findAll({
|
||||
where: {
|
||||
id: {
|
||||
[Op.in]: ids,
|
||||
},
|
||||
},
|
||||
transaction,
|
||||
});
|
||||
|
||||
await db.sequelize.transaction(async (transaction) => {
|
||||
for (const record of departments) {
|
||||
await record.update(
|
||||
{deletedBy: currentUser.id},
|
||||
{transaction}
|
||||
);
|
||||
}
|
||||
for (const record of departments) {
|
||||
await record.destroy({transaction});
|
||||
}
|
||||
});
|
||||
|
||||
|
||||
return departments;
|
||||
}
|
||||
|
||||
static async remove(id, options) {
|
||||
const currentUser = (options && options.currentUser) || {id: null};
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const departments = await db.departments.findByPk(id, options);
|
||||
|
||||
await departments.update({
|
||||
deletedBy: currentUser.id
|
||||
}, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
await departments.destroy({
|
||||
transaction
|
||||
});
|
||||
|
||||
return departments;
|
||||
}
|
||||
|
||||
static async findBy(where, options) {
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const departments = await db.departments.findOne(
|
||||
{ where },
|
||||
{ transaction },
|
||||
);
|
||||
|
||||
if (!departments) {
|
||||
return departments;
|
||||
}
|
||||
|
||||
const output = departments.get({plain: true});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
output.patients_department = await departments.getPatients_department({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
output.head_user = await departments.getHead_user({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
|
||||
return output;
|
||||
}
|
||||
|
||||
static async findAll(
|
||||
filter,
|
||||
options
|
||||
) {
|
||||
const limit = filter.limit || 0;
|
||||
let offset = 0;
|
||||
let where = {};
|
||||
const currentPage = +filter.page;
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
offset = currentPage * limit;
|
||||
|
||||
const orderBy = null;
|
||||
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
let include = [
|
||||
|
||||
{
|
||||
model: db.users,
|
||||
as: 'head_user',
|
||||
|
||||
where: filter.head_user ? {
|
||||
[Op.or]: [
|
||||
{ id: { [Op.in]: filter.head_user.split('|').map(term => Utils.uuid(term)) } },
|
||||
{
|
||||
firstName: {
|
||||
[Op.or]: filter.head_user.split('|').map(term => ({ [Op.iLike]: `%${term}%` }))
|
||||
}
|
||||
},
|
||||
]
|
||||
} : {},
|
||||
|
||||
},
|
||||
|
||||
|
||||
|
||||
];
|
||||
|
||||
if (filter) {
|
||||
if (filter.id) {
|
||||
where = {
|
||||
...where,
|
||||
['id']: Utils.uuid(filter.id),
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
if (filter.name) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'departments',
|
||||
'name',
|
||||
filter.name,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.code) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'departments',
|
||||
'code',
|
||||
filter.code,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.location) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'departments',
|
||||
'location',
|
||||
filter.location,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.phone) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'departments',
|
||||
'phone',
|
||||
filter.phone,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
if (filter.active !== undefined) {
|
||||
where = {
|
||||
...where,
|
||||
active: filter.active === true || filter.active === 'true'
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
if (filter.createdAtRange) {
|
||||
const [start, end] = filter.createdAtRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
['createdAt']: {
|
||||
...where.createdAt,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
['createdAt']: {
|
||||
...where.createdAt,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
const queryOptions = {
|
||||
where,
|
||||
include,
|
||||
distinct: true,
|
||||
order: filter.field && filter.sort
|
||||
? [[filter.field, filter.sort]]
|
||||
: [['createdAt', 'desc']],
|
||||
transaction: options?.transaction,
|
||||
logging: console.log
|
||||
};
|
||||
|
||||
if (!options?.countOnly) {
|
||||
queryOptions.limit = limit ? Number(limit) : undefined;
|
||||
queryOptions.offset = offset ? Number(offset) : undefined;
|
||||
}
|
||||
|
||||
try {
|
||||
const { rows, count } = await db.departments.findAndCountAll(queryOptions);
|
||||
|
||||
return {
|
||||
rows: options?.countOnly ? [] : rows,
|
||||
count: count
|
||||
};
|
||||
} catch (error) {
|
||||
console.error('Error executing query:', error);
|
||||
throw error;
|
||||
}
|
||||
}
|
||||
|
||||
static async findAllAutocomplete(query, limit, offset, ) {
|
||||
let where = {};
|
||||
|
||||
|
||||
|
||||
if (query) {
|
||||
where = {
|
||||
[Op.or]: [
|
||||
{ ['id']: Utils.uuid(query) },
|
||||
Utils.ilike(
|
||||
'departments',
|
||||
'name',
|
||||
query,
|
||||
),
|
||||
],
|
||||
};
|
||||
}
|
||||
|
||||
const records = await db.departments.findAll({
|
||||
attributes: [ 'id', 'name' ],
|
||||
where,
|
||||
limit: limit ? Number(limit) : undefined,
|
||||
offset: offset ? Number(offset) : undefined,
|
||||
orderBy: [['name', 'ASC']],
|
||||
});
|
||||
|
||||
return records.map((record) => ({
|
||||
id: record.id,
|
||||
label: record.name,
|
||||
}));
|
||||
}
|
||||
|
||||
|
||||
};
|
||||
|
||||
87
backend/src/db/api/file.js
Normal file
87
backend/src/db/api/file.js
Normal file
@ -0,0 +1,87 @@
|
||||
const db = require('../models');
|
||||
const assert = require('assert');
|
||||
const services = require('../../services/file');
|
||||
|
||||
module.exports = class FileDBApi {
|
||||
static async replaceRelationFiles(
|
||||
relation,
|
||||
rawFiles,
|
||||
options,
|
||||
) {
|
||||
assert(relation.belongsTo, 'belongsTo is required');
|
||||
assert(
|
||||
relation.belongsToColumn,
|
||||
'belongsToColumn is required',
|
||||
);
|
||||
assert(relation.belongsToId, 'belongsToId is required');
|
||||
|
||||
let files = [];
|
||||
|
||||
if (Array.isArray(rawFiles)) {
|
||||
files = rawFiles;
|
||||
} else {
|
||||
files = rawFiles ? [rawFiles] : [];
|
||||
}
|
||||
|
||||
await this._removeLegacyFiles(relation, files, options);
|
||||
await this._addFiles(relation, files, options);
|
||||
}
|
||||
|
||||
static async _addFiles(relation, files, options) {
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
const currentUser = (options && options.currentUser) || {id: null};
|
||||
|
||||
const inexistentFiles = files.filter(
|
||||
(file) => !!file.new,
|
||||
);
|
||||
|
||||
for (const file of inexistentFiles) {
|
||||
await db.file.create(
|
||||
{
|
||||
belongsTo: relation.belongsTo,
|
||||
belongsToColumn: relation.belongsToColumn,
|
||||
belongsToId: relation.belongsToId,
|
||||
name: file.name,
|
||||
sizeInBytes: file.sizeInBytes,
|
||||
privateUrl: file.privateUrl,
|
||||
publicUrl: file.publicUrl,
|
||||
createdById: currentUser.id,
|
||||
updatedById: currentUser.id,
|
||||
},
|
||||
{
|
||||
transaction,
|
||||
},
|
||||
);
|
||||
}
|
||||
}
|
||||
|
||||
static async _removeLegacyFiles(
|
||||
relation,
|
||||
files,
|
||||
options,
|
||||
) {
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const filesToDelete = await db.file.findAll({
|
||||
where: {
|
||||
belongsTo: relation.belongsTo,
|
||||
belongsToId: relation.belongsToId,
|
||||
belongsToColumn: relation.belongsToColumn,
|
||||
id: {
|
||||
[db.Sequelize.Op
|
||||
.notIn]: files
|
||||
.filter((file) => !file.new)
|
||||
.map((file) => file.id)
|
||||
},
|
||||
},
|
||||
transaction,
|
||||
});
|
||||
|
||||
for (let file of filesToDelete) {
|
||||
await services.deleteGCloud(file.privateUrl);
|
||||
await file.destroy({
|
||||
transaction,
|
||||
});
|
||||
}
|
||||
}
|
||||
};
|
||||
621
backend/src/db/api/imaging_orders.js
Normal file
621
backend/src/db/api/imaging_orders.js
Normal file
@ -0,0 +1,621 @@
|
||||
|
||||
const db = require('../models');
|
||||
const FileDBApi = require('./file');
|
||||
const crypto = require('crypto');
|
||||
const Utils = require('../utils');
|
||||
|
||||
|
||||
|
||||
const Sequelize = db.Sequelize;
|
||||
const Op = Sequelize.Op;
|
||||
|
||||
module.exports = class Imaging_ordersDBApi {
|
||||
|
||||
|
||||
|
||||
static async create(data, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const imaging_orders = await db.imaging_orders.create(
|
||||
{
|
||||
id: data.id || undefined,
|
||||
|
||||
ordered_datetime: data.ordered_datetime
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
modality: data.modality
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
body_part: data.body_part
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
priority: data.priority
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
status: data.status
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
clinical_indication: data.clinical_indication
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
importHash: data.importHash || null,
|
||||
createdById: currentUser.id,
|
||||
updatedById: currentUser.id,
|
||||
},
|
||||
{ transaction },
|
||||
);
|
||||
|
||||
|
||||
await imaging_orders.setPatient( data.patient || null, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
await imaging_orders.setTumor_case( data.tumor_case || null, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
await imaging_orders.setVisit( data.visit || null, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
await imaging_orders.setOrdering_user( data.ordering_user || null, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
return imaging_orders;
|
||||
}
|
||||
|
||||
|
||||
static async bulkImport(data, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
// Prepare data - wrapping individual data transformations in a map() method
|
||||
const imaging_ordersData = data.map((item, index) => ({
|
||||
id: item.id || undefined,
|
||||
|
||||
ordered_datetime: item.ordered_datetime
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
modality: item.modality
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
body_part: item.body_part
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
priority: item.priority
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
status: item.status
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
clinical_indication: item.clinical_indication
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
importHash: item.importHash || null,
|
||||
createdById: currentUser.id,
|
||||
updatedById: currentUser.id,
|
||||
createdAt: new Date(Date.now() + index * 1000),
|
||||
}));
|
||||
|
||||
// Bulk create items
|
||||
const imaging_orders = await db.imaging_orders.bulkCreate(imaging_ordersData, { transaction });
|
||||
|
||||
// For each item created, replace relation files
|
||||
|
||||
|
||||
return imaging_orders;
|
||||
}
|
||||
|
||||
static async update(id, data, options) {
|
||||
const currentUser = (options && options.currentUser) || {id: null};
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
|
||||
const imaging_orders = await db.imaging_orders.findByPk(id, {}, {transaction});
|
||||
|
||||
|
||||
|
||||
|
||||
const updatePayload = {};
|
||||
|
||||
if (data.ordered_datetime !== undefined) updatePayload.ordered_datetime = data.ordered_datetime;
|
||||
|
||||
|
||||
if (data.modality !== undefined) updatePayload.modality = data.modality;
|
||||
|
||||
|
||||
if (data.body_part !== undefined) updatePayload.body_part = data.body_part;
|
||||
|
||||
|
||||
if (data.priority !== undefined) updatePayload.priority = data.priority;
|
||||
|
||||
|
||||
if (data.status !== undefined) updatePayload.status = data.status;
|
||||
|
||||
|
||||
if (data.clinical_indication !== undefined) updatePayload.clinical_indication = data.clinical_indication;
|
||||
|
||||
|
||||
updatePayload.updatedById = currentUser.id;
|
||||
|
||||
await imaging_orders.update(updatePayload, {transaction});
|
||||
|
||||
|
||||
|
||||
if (data.patient !== undefined) {
|
||||
await imaging_orders.setPatient(
|
||||
|
||||
data.patient,
|
||||
|
||||
{ transaction }
|
||||
);
|
||||
}
|
||||
|
||||
if (data.tumor_case !== undefined) {
|
||||
await imaging_orders.setTumor_case(
|
||||
|
||||
data.tumor_case,
|
||||
|
||||
{ transaction }
|
||||
);
|
||||
}
|
||||
|
||||
if (data.visit !== undefined) {
|
||||
await imaging_orders.setVisit(
|
||||
|
||||
data.visit,
|
||||
|
||||
{ transaction }
|
||||
);
|
||||
}
|
||||
|
||||
if (data.ordering_user !== undefined) {
|
||||
await imaging_orders.setOrdering_user(
|
||||
|
||||
data.ordering_user,
|
||||
|
||||
{ transaction }
|
||||
);
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
return imaging_orders;
|
||||
}
|
||||
|
||||
static async deleteByIds(ids, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const imaging_orders = await db.imaging_orders.findAll({
|
||||
where: {
|
||||
id: {
|
||||
[Op.in]: ids,
|
||||
},
|
||||
},
|
||||
transaction,
|
||||
});
|
||||
|
||||
await db.sequelize.transaction(async (transaction) => {
|
||||
for (const record of imaging_orders) {
|
||||
await record.update(
|
||||
{deletedBy: currentUser.id},
|
||||
{transaction}
|
||||
);
|
||||
}
|
||||
for (const record of imaging_orders) {
|
||||
await record.destroy({transaction});
|
||||
}
|
||||
});
|
||||
|
||||
|
||||
return imaging_orders;
|
||||
}
|
||||
|
||||
static async remove(id, options) {
|
||||
const currentUser = (options && options.currentUser) || {id: null};
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const imaging_orders = await db.imaging_orders.findByPk(id, options);
|
||||
|
||||
await imaging_orders.update({
|
||||
deletedBy: currentUser.id
|
||||
}, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
await imaging_orders.destroy({
|
||||
transaction
|
||||
});
|
||||
|
||||
return imaging_orders;
|
||||
}
|
||||
|
||||
static async findBy(where, options) {
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const imaging_orders = await db.imaging_orders.findOne(
|
||||
{ where },
|
||||
{ transaction },
|
||||
);
|
||||
|
||||
if (!imaging_orders) {
|
||||
return imaging_orders;
|
||||
}
|
||||
|
||||
const output = imaging_orders.get({plain: true});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
output.imaging_reports_imaging_order = await imaging_orders.getImaging_reports_imaging_order({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
output.patient = await imaging_orders.getPatient({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
output.tumor_case = await imaging_orders.getTumor_case({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
output.visit = await imaging_orders.getVisit({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
output.ordering_user = await imaging_orders.getOrdering_user({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
|
||||
return output;
|
||||
}
|
||||
|
||||
static async findAll(
|
||||
filter,
|
||||
options
|
||||
) {
|
||||
const limit = filter.limit || 0;
|
||||
let offset = 0;
|
||||
let where = {};
|
||||
const currentPage = +filter.page;
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
offset = currentPage * limit;
|
||||
|
||||
const orderBy = null;
|
||||
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
let include = [
|
||||
|
||||
{
|
||||
model: db.patients,
|
||||
as: 'patient',
|
||||
|
||||
where: filter.patient ? {
|
||||
[Op.or]: [
|
||||
{ id: { [Op.in]: filter.patient.split('|').map(term => Utils.uuid(term)) } },
|
||||
{
|
||||
full_name: {
|
||||
[Op.or]: filter.patient.split('|').map(term => ({ [Op.iLike]: `%${term}%` }))
|
||||
}
|
||||
},
|
||||
]
|
||||
} : {},
|
||||
|
||||
},
|
||||
|
||||
{
|
||||
model: db.tumor_cases,
|
||||
as: 'tumor_case',
|
||||
|
||||
where: filter.tumor_case ? {
|
||||
[Op.or]: [
|
||||
{ id: { [Op.in]: filter.tumor_case.split('|').map(term => Utils.uuid(term)) } },
|
||||
{
|
||||
case_number: {
|
||||
[Op.or]: filter.tumor_case.split('|').map(term => ({ [Op.iLike]: `%${term}%` }))
|
||||
}
|
||||
},
|
||||
]
|
||||
} : {},
|
||||
|
||||
},
|
||||
|
||||
{
|
||||
model: db.clinical_visits,
|
||||
as: 'visit',
|
||||
|
||||
where: filter.visit ? {
|
||||
[Op.or]: [
|
||||
{ id: { [Op.in]: filter.visit.split('|').map(term => Utils.uuid(term)) } },
|
||||
{
|
||||
visit_type: {
|
||||
[Op.or]: filter.visit.split('|').map(term => ({ [Op.iLike]: `%${term}%` }))
|
||||
}
|
||||
},
|
||||
]
|
||||
} : {},
|
||||
|
||||
},
|
||||
|
||||
{
|
||||
model: db.users,
|
||||
as: 'ordering_user',
|
||||
|
||||
where: filter.ordering_user ? {
|
||||
[Op.or]: [
|
||||
{ id: { [Op.in]: filter.ordering_user.split('|').map(term => Utils.uuid(term)) } },
|
||||
{
|
||||
firstName: {
|
||||
[Op.or]: filter.ordering_user.split('|').map(term => ({ [Op.iLike]: `%${term}%` }))
|
||||
}
|
||||
},
|
||||
]
|
||||
} : {},
|
||||
|
||||
},
|
||||
|
||||
|
||||
|
||||
];
|
||||
|
||||
if (filter) {
|
||||
if (filter.id) {
|
||||
where = {
|
||||
...where,
|
||||
['id']: Utils.uuid(filter.id),
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
if (filter.body_part) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'imaging_orders',
|
||||
'body_part',
|
||||
filter.body_part,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.clinical_indication) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'imaging_orders',
|
||||
'clinical_indication',
|
||||
filter.clinical_indication,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
if (filter.ordered_datetimeRange) {
|
||||
const [start, end] = filter.ordered_datetimeRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
ordered_datetime: {
|
||||
...where.ordered_datetime,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
ordered_datetime: {
|
||||
...where.ordered_datetime,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
if (filter.active !== undefined) {
|
||||
where = {
|
||||
...where,
|
||||
active: filter.active === true || filter.active === 'true'
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
if (filter.modality) {
|
||||
where = {
|
||||
...where,
|
||||
modality: filter.modality,
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.priority) {
|
||||
where = {
|
||||
...where,
|
||||
priority: filter.priority,
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.status) {
|
||||
where = {
|
||||
...where,
|
||||
status: filter.status,
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
if (filter.createdAtRange) {
|
||||
const [start, end] = filter.createdAtRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
['createdAt']: {
|
||||
...where.createdAt,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
['createdAt']: {
|
||||
...where.createdAt,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
const queryOptions = {
|
||||
where,
|
||||
include,
|
||||
distinct: true,
|
||||
order: filter.field && filter.sort
|
||||
? [[filter.field, filter.sort]]
|
||||
: [['createdAt', 'desc']],
|
||||
transaction: options?.transaction,
|
||||
logging: console.log
|
||||
};
|
||||
|
||||
if (!options?.countOnly) {
|
||||
queryOptions.limit = limit ? Number(limit) : undefined;
|
||||
queryOptions.offset = offset ? Number(offset) : undefined;
|
||||
}
|
||||
|
||||
try {
|
||||
const { rows, count } = await db.imaging_orders.findAndCountAll(queryOptions);
|
||||
|
||||
return {
|
||||
rows: options?.countOnly ? [] : rows,
|
||||
count: count
|
||||
};
|
||||
} catch (error) {
|
||||
console.error('Error executing query:', error);
|
||||
throw error;
|
||||
}
|
||||
}
|
||||
|
||||
static async findAllAutocomplete(query, limit, offset, ) {
|
||||
let where = {};
|
||||
|
||||
|
||||
|
||||
if (query) {
|
||||
where = {
|
||||
[Op.or]: [
|
||||
{ ['id']: Utils.uuid(query) },
|
||||
Utils.ilike(
|
||||
'imaging_orders',
|
||||
'body_part',
|
||||
query,
|
||||
),
|
||||
],
|
||||
};
|
||||
}
|
||||
|
||||
const records = await db.imaging_orders.findAll({
|
||||
attributes: [ 'id', 'body_part' ],
|
||||
where,
|
||||
limit: limit ? Number(limit) : undefined,
|
||||
offset: offset ? Number(offset) : undefined,
|
||||
orderBy: [['body_part', 'ASC']],
|
||||
});
|
||||
|
||||
return records.map((record) => ({
|
||||
id: record.id,
|
||||
label: record.body_part,
|
||||
}));
|
||||
}
|
||||
|
||||
|
||||
};
|
||||
|
||||
624
backend/src/db/api/imaging_reports.js
Normal file
624
backend/src/db/api/imaging_reports.js
Normal file
@ -0,0 +1,624 @@
|
||||
|
||||
const db = require('../models');
|
||||
const FileDBApi = require('./file');
|
||||
const crypto = require('crypto');
|
||||
const Utils = require('../utils');
|
||||
|
||||
|
||||
|
||||
const Sequelize = db.Sequelize;
|
||||
const Op = Sequelize.Op;
|
||||
|
||||
module.exports = class Imaging_reportsDBApi {
|
||||
|
||||
|
||||
|
||||
static async create(data, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const imaging_reports = await db.imaging_reports.create(
|
||||
{
|
||||
id: data.id || undefined,
|
||||
|
||||
performed_datetime: data.performed_datetime
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
reported_datetime: data.reported_datetime
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
report_status: data.report_status
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
findings: data.findings
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
impression: data.impression
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
importHash: data.importHash || null,
|
||||
createdById: currentUser.id,
|
||||
updatedById: currentUser.id,
|
||||
},
|
||||
{ transaction },
|
||||
);
|
||||
|
||||
|
||||
await imaging_reports.setImaging_order( data.imaging_order || null, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
await imaging_reports.setRadiologist_user( data.radiologist_user || null, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
await FileDBApi.replaceRelationFiles(
|
||||
{
|
||||
belongsTo: db.imaging_reports.getTableName(),
|
||||
belongsToColumn: 'report_file',
|
||||
belongsToId: imaging_reports.id,
|
||||
},
|
||||
data.report_file,
|
||||
options,
|
||||
);
|
||||
|
||||
await FileDBApi.replaceRelationFiles(
|
||||
{
|
||||
belongsTo: db.imaging_reports.getTableName(),
|
||||
belongsToColumn: 'dicom_archive',
|
||||
belongsToId: imaging_reports.id,
|
||||
},
|
||||
data.dicom_archive,
|
||||
options,
|
||||
);
|
||||
|
||||
|
||||
return imaging_reports;
|
||||
}
|
||||
|
||||
|
||||
static async bulkImport(data, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
// Prepare data - wrapping individual data transformations in a map() method
|
||||
const imaging_reportsData = data.map((item, index) => ({
|
||||
id: item.id || undefined,
|
||||
|
||||
performed_datetime: item.performed_datetime
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
reported_datetime: item.reported_datetime
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
report_status: item.report_status
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
findings: item.findings
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
impression: item.impression
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
importHash: item.importHash || null,
|
||||
createdById: currentUser.id,
|
||||
updatedById: currentUser.id,
|
||||
createdAt: new Date(Date.now() + index * 1000),
|
||||
}));
|
||||
|
||||
// Bulk create items
|
||||
const imaging_reports = await db.imaging_reports.bulkCreate(imaging_reportsData, { transaction });
|
||||
|
||||
// For each item created, replace relation files
|
||||
|
||||
for (let i = 0; i < imaging_reports.length; i++) {
|
||||
await FileDBApi.replaceRelationFiles(
|
||||
{
|
||||
belongsTo: db.imaging_reports.getTableName(),
|
||||
belongsToColumn: 'report_file',
|
||||
belongsToId: imaging_reports[i].id,
|
||||
},
|
||||
data[i].report_file,
|
||||
options,
|
||||
);
|
||||
}
|
||||
|
||||
for (let i = 0; i < imaging_reports.length; i++) {
|
||||
await FileDBApi.replaceRelationFiles(
|
||||
{
|
||||
belongsTo: db.imaging_reports.getTableName(),
|
||||
belongsToColumn: 'dicom_archive',
|
||||
belongsToId: imaging_reports[i].id,
|
||||
},
|
||||
data[i].dicom_archive,
|
||||
options,
|
||||
);
|
||||
}
|
||||
|
||||
|
||||
return imaging_reports;
|
||||
}
|
||||
|
||||
static async update(id, data, options) {
|
||||
const currentUser = (options && options.currentUser) || {id: null};
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
|
||||
const imaging_reports = await db.imaging_reports.findByPk(id, {}, {transaction});
|
||||
|
||||
|
||||
|
||||
|
||||
const updatePayload = {};
|
||||
|
||||
if (data.performed_datetime !== undefined) updatePayload.performed_datetime = data.performed_datetime;
|
||||
|
||||
|
||||
if (data.reported_datetime !== undefined) updatePayload.reported_datetime = data.reported_datetime;
|
||||
|
||||
|
||||
if (data.report_status !== undefined) updatePayload.report_status = data.report_status;
|
||||
|
||||
|
||||
if (data.findings !== undefined) updatePayload.findings = data.findings;
|
||||
|
||||
|
||||
if (data.impression !== undefined) updatePayload.impression = data.impression;
|
||||
|
||||
|
||||
updatePayload.updatedById = currentUser.id;
|
||||
|
||||
await imaging_reports.update(updatePayload, {transaction});
|
||||
|
||||
|
||||
|
||||
if (data.imaging_order !== undefined) {
|
||||
await imaging_reports.setImaging_order(
|
||||
|
||||
data.imaging_order,
|
||||
|
||||
{ transaction }
|
||||
);
|
||||
}
|
||||
|
||||
if (data.radiologist_user !== undefined) {
|
||||
await imaging_reports.setRadiologist_user(
|
||||
|
||||
data.radiologist_user,
|
||||
|
||||
{ transaction }
|
||||
);
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
await FileDBApi.replaceRelationFiles(
|
||||
{
|
||||
belongsTo: db.imaging_reports.getTableName(),
|
||||
belongsToColumn: 'report_file',
|
||||
belongsToId: imaging_reports.id,
|
||||
},
|
||||
data.report_file,
|
||||
options,
|
||||
);
|
||||
|
||||
await FileDBApi.replaceRelationFiles(
|
||||
{
|
||||
belongsTo: db.imaging_reports.getTableName(),
|
||||
belongsToColumn: 'dicom_archive',
|
||||
belongsToId: imaging_reports.id,
|
||||
},
|
||||
data.dicom_archive,
|
||||
options,
|
||||
);
|
||||
|
||||
|
||||
return imaging_reports;
|
||||
}
|
||||
|
||||
static async deleteByIds(ids, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const imaging_reports = await db.imaging_reports.findAll({
|
||||
where: {
|
||||
id: {
|
||||
[Op.in]: ids,
|
||||
},
|
||||
},
|
||||
transaction,
|
||||
});
|
||||
|
||||
await db.sequelize.transaction(async (transaction) => {
|
||||
for (const record of imaging_reports) {
|
||||
await record.update(
|
||||
{deletedBy: currentUser.id},
|
||||
{transaction}
|
||||
);
|
||||
}
|
||||
for (const record of imaging_reports) {
|
||||
await record.destroy({transaction});
|
||||
}
|
||||
});
|
||||
|
||||
|
||||
return imaging_reports;
|
||||
}
|
||||
|
||||
static async remove(id, options) {
|
||||
const currentUser = (options && options.currentUser) || {id: null};
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const imaging_reports = await db.imaging_reports.findByPk(id, options);
|
||||
|
||||
await imaging_reports.update({
|
||||
deletedBy: currentUser.id
|
||||
}, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
await imaging_reports.destroy({
|
||||
transaction
|
||||
});
|
||||
|
||||
return imaging_reports;
|
||||
}
|
||||
|
||||
static async findBy(where, options) {
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const imaging_reports = await db.imaging_reports.findOne(
|
||||
{ where },
|
||||
{ transaction },
|
||||
);
|
||||
|
||||
if (!imaging_reports) {
|
||||
return imaging_reports;
|
||||
}
|
||||
|
||||
const output = imaging_reports.get({plain: true});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
output.imaging_order = await imaging_reports.getImaging_order({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
output.radiologist_user = await imaging_reports.getRadiologist_user({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
output.report_file = await imaging_reports.getReport_file({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
output.dicom_archive = await imaging_reports.getDicom_archive({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
|
||||
return output;
|
||||
}
|
||||
|
||||
static async findAll(
|
||||
filter,
|
||||
options
|
||||
) {
|
||||
const limit = filter.limit || 0;
|
||||
let offset = 0;
|
||||
let where = {};
|
||||
const currentPage = +filter.page;
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
offset = currentPage * limit;
|
||||
|
||||
const orderBy = null;
|
||||
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
let include = [
|
||||
|
||||
{
|
||||
model: db.imaging_orders,
|
||||
as: 'imaging_order',
|
||||
|
||||
where: filter.imaging_order ? {
|
||||
[Op.or]: [
|
||||
{ id: { [Op.in]: filter.imaging_order.split('|').map(term => Utils.uuid(term)) } },
|
||||
{
|
||||
body_part: {
|
||||
[Op.or]: filter.imaging_order.split('|').map(term => ({ [Op.iLike]: `%${term}%` }))
|
||||
}
|
||||
},
|
||||
]
|
||||
} : {},
|
||||
|
||||
},
|
||||
|
||||
{
|
||||
model: db.users,
|
||||
as: 'radiologist_user',
|
||||
|
||||
where: filter.radiologist_user ? {
|
||||
[Op.or]: [
|
||||
{ id: { [Op.in]: filter.radiologist_user.split('|').map(term => Utils.uuid(term)) } },
|
||||
{
|
||||
firstName: {
|
||||
[Op.or]: filter.radiologist_user.split('|').map(term => ({ [Op.iLike]: `%${term}%` }))
|
||||
}
|
||||
},
|
||||
]
|
||||
} : {},
|
||||
|
||||
},
|
||||
|
||||
|
||||
|
||||
{
|
||||
model: db.file,
|
||||
as: 'report_file',
|
||||
},
|
||||
|
||||
{
|
||||
model: db.file,
|
||||
as: 'dicom_archive',
|
||||
},
|
||||
|
||||
];
|
||||
|
||||
if (filter) {
|
||||
if (filter.id) {
|
||||
where = {
|
||||
...where,
|
||||
['id']: Utils.uuid(filter.id),
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
if (filter.findings) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'imaging_reports',
|
||||
'findings',
|
||||
filter.findings,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.impression) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'imaging_reports',
|
||||
'impression',
|
||||
filter.impression,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
if (filter.performed_datetimeRange) {
|
||||
const [start, end] = filter.performed_datetimeRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
performed_datetime: {
|
||||
...where.performed_datetime,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
performed_datetime: {
|
||||
...where.performed_datetime,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
|
||||
if (filter.reported_datetimeRange) {
|
||||
const [start, end] = filter.reported_datetimeRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
reported_datetime: {
|
||||
...where.reported_datetime,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
reported_datetime: {
|
||||
...where.reported_datetime,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
if (filter.active !== undefined) {
|
||||
where = {
|
||||
...where,
|
||||
active: filter.active === true || filter.active === 'true'
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
if (filter.report_status) {
|
||||
where = {
|
||||
...where,
|
||||
report_status: filter.report_status,
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
if (filter.createdAtRange) {
|
||||
const [start, end] = filter.createdAtRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
['createdAt']: {
|
||||
...where.createdAt,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
['createdAt']: {
|
||||
...where.createdAt,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
const queryOptions = {
|
||||
where,
|
||||
include,
|
||||
distinct: true,
|
||||
order: filter.field && filter.sort
|
||||
? [[filter.field, filter.sort]]
|
||||
: [['createdAt', 'desc']],
|
||||
transaction: options?.transaction,
|
||||
logging: console.log
|
||||
};
|
||||
|
||||
if (!options?.countOnly) {
|
||||
queryOptions.limit = limit ? Number(limit) : undefined;
|
||||
queryOptions.offset = offset ? Number(offset) : undefined;
|
||||
}
|
||||
|
||||
try {
|
||||
const { rows, count } = await db.imaging_reports.findAndCountAll(queryOptions);
|
||||
|
||||
return {
|
||||
rows: options?.countOnly ? [] : rows,
|
||||
count: count
|
||||
};
|
||||
} catch (error) {
|
||||
console.error('Error executing query:', error);
|
||||
throw error;
|
||||
}
|
||||
}
|
||||
|
||||
static async findAllAutocomplete(query, limit, offset, ) {
|
||||
let where = {};
|
||||
|
||||
|
||||
|
||||
if (query) {
|
||||
where = {
|
||||
[Op.or]: [
|
||||
{ ['id']: Utils.uuid(query) },
|
||||
Utils.ilike(
|
||||
'imaging_reports',
|
||||
'impression',
|
||||
query,
|
||||
),
|
||||
],
|
||||
};
|
||||
}
|
||||
|
||||
const records = await db.imaging_reports.findAll({
|
||||
attributes: [ 'id', 'impression' ],
|
||||
where,
|
||||
limit: limit ? Number(limit) : undefined,
|
||||
offset: offset ? Number(offset) : undefined,
|
||||
orderBy: [['impression', 'ASC']],
|
||||
});
|
||||
|
||||
return records.map((record) => ({
|
||||
id: record.id,
|
||||
label: record.impression,
|
||||
}));
|
||||
}
|
||||
|
||||
|
||||
};
|
||||
|
||||
577
backend/src/db/api/lab_orders.js
Normal file
577
backend/src/db/api/lab_orders.js
Normal file
@ -0,0 +1,577 @@
|
||||
|
||||
const db = require('../models');
|
||||
const FileDBApi = require('./file');
|
||||
const crypto = require('crypto');
|
||||
const Utils = require('../utils');
|
||||
|
||||
|
||||
|
||||
const Sequelize = db.Sequelize;
|
||||
const Op = Sequelize.Op;
|
||||
|
||||
module.exports = class Lab_ordersDBApi {
|
||||
|
||||
|
||||
|
||||
static async create(data, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const lab_orders = await db.lab_orders.create(
|
||||
{
|
||||
id: data.id || undefined,
|
||||
|
||||
ordered_datetime: data.ordered_datetime
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
priority: data.priority
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
status: data.status
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
notes: data.notes
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
importHash: data.importHash || null,
|
||||
createdById: currentUser.id,
|
||||
updatedById: currentUser.id,
|
||||
},
|
||||
{ transaction },
|
||||
);
|
||||
|
||||
|
||||
await lab_orders.setPatient( data.patient || null, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
await lab_orders.setTumor_case( data.tumor_case || null, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
await lab_orders.setVisit( data.visit || null, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
await lab_orders.setOrdering_user( data.ordering_user || null, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
return lab_orders;
|
||||
}
|
||||
|
||||
|
||||
static async bulkImport(data, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
// Prepare data - wrapping individual data transformations in a map() method
|
||||
const lab_ordersData = data.map((item, index) => ({
|
||||
id: item.id || undefined,
|
||||
|
||||
ordered_datetime: item.ordered_datetime
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
priority: item.priority
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
status: item.status
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
notes: item.notes
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
importHash: item.importHash || null,
|
||||
createdById: currentUser.id,
|
||||
updatedById: currentUser.id,
|
||||
createdAt: new Date(Date.now() + index * 1000),
|
||||
}));
|
||||
|
||||
// Bulk create items
|
||||
const lab_orders = await db.lab_orders.bulkCreate(lab_ordersData, { transaction });
|
||||
|
||||
// For each item created, replace relation files
|
||||
|
||||
|
||||
return lab_orders;
|
||||
}
|
||||
|
||||
static async update(id, data, options) {
|
||||
const currentUser = (options && options.currentUser) || {id: null};
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
|
||||
const lab_orders = await db.lab_orders.findByPk(id, {}, {transaction});
|
||||
|
||||
|
||||
|
||||
|
||||
const updatePayload = {};
|
||||
|
||||
if (data.ordered_datetime !== undefined) updatePayload.ordered_datetime = data.ordered_datetime;
|
||||
|
||||
|
||||
if (data.priority !== undefined) updatePayload.priority = data.priority;
|
||||
|
||||
|
||||
if (data.status !== undefined) updatePayload.status = data.status;
|
||||
|
||||
|
||||
if (data.notes !== undefined) updatePayload.notes = data.notes;
|
||||
|
||||
|
||||
updatePayload.updatedById = currentUser.id;
|
||||
|
||||
await lab_orders.update(updatePayload, {transaction});
|
||||
|
||||
|
||||
|
||||
if (data.patient !== undefined) {
|
||||
await lab_orders.setPatient(
|
||||
|
||||
data.patient,
|
||||
|
||||
{ transaction }
|
||||
);
|
||||
}
|
||||
|
||||
if (data.tumor_case !== undefined) {
|
||||
await lab_orders.setTumor_case(
|
||||
|
||||
data.tumor_case,
|
||||
|
||||
{ transaction }
|
||||
);
|
||||
}
|
||||
|
||||
if (data.visit !== undefined) {
|
||||
await lab_orders.setVisit(
|
||||
|
||||
data.visit,
|
||||
|
||||
{ transaction }
|
||||
);
|
||||
}
|
||||
|
||||
if (data.ordering_user !== undefined) {
|
||||
await lab_orders.setOrdering_user(
|
||||
|
||||
data.ordering_user,
|
||||
|
||||
{ transaction }
|
||||
);
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
return lab_orders;
|
||||
}
|
||||
|
||||
static async deleteByIds(ids, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const lab_orders = await db.lab_orders.findAll({
|
||||
where: {
|
||||
id: {
|
||||
[Op.in]: ids,
|
||||
},
|
||||
},
|
||||
transaction,
|
||||
});
|
||||
|
||||
await db.sequelize.transaction(async (transaction) => {
|
||||
for (const record of lab_orders) {
|
||||
await record.update(
|
||||
{deletedBy: currentUser.id},
|
||||
{transaction}
|
||||
);
|
||||
}
|
||||
for (const record of lab_orders) {
|
||||
await record.destroy({transaction});
|
||||
}
|
||||
});
|
||||
|
||||
|
||||
return lab_orders;
|
||||
}
|
||||
|
||||
static async remove(id, options) {
|
||||
const currentUser = (options && options.currentUser) || {id: null};
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const lab_orders = await db.lab_orders.findByPk(id, options);
|
||||
|
||||
await lab_orders.update({
|
||||
deletedBy: currentUser.id
|
||||
}, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
await lab_orders.destroy({
|
||||
transaction
|
||||
});
|
||||
|
||||
return lab_orders;
|
||||
}
|
||||
|
||||
static async findBy(where, options) {
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const lab_orders = await db.lab_orders.findOne(
|
||||
{ where },
|
||||
{ transaction },
|
||||
);
|
||||
|
||||
if (!lab_orders) {
|
||||
return lab_orders;
|
||||
}
|
||||
|
||||
const output = lab_orders.get({plain: true});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
output.lab_results_lab_order = await lab_orders.getLab_results_lab_order({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
output.patient = await lab_orders.getPatient({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
output.tumor_case = await lab_orders.getTumor_case({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
output.visit = await lab_orders.getVisit({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
output.ordering_user = await lab_orders.getOrdering_user({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
|
||||
return output;
|
||||
}
|
||||
|
||||
static async findAll(
|
||||
filter,
|
||||
options
|
||||
) {
|
||||
const limit = filter.limit || 0;
|
||||
let offset = 0;
|
||||
let where = {};
|
||||
const currentPage = +filter.page;
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
offset = currentPage * limit;
|
||||
|
||||
const orderBy = null;
|
||||
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
let include = [
|
||||
|
||||
{
|
||||
model: db.patients,
|
||||
as: 'patient',
|
||||
|
||||
where: filter.patient ? {
|
||||
[Op.or]: [
|
||||
{ id: { [Op.in]: filter.patient.split('|').map(term => Utils.uuid(term)) } },
|
||||
{
|
||||
full_name: {
|
||||
[Op.or]: filter.patient.split('|').map(term => ({ [Op.iLike]: `%${term}%` }))
|
||||
}
|
||||
},
|
||||
]
|
||||
} : {},
|
||||
|
||||
},
|
||||
|
||||
{
|
||||
model: db.tumor_cases,
|
||||
as: 'tumor_case',
|
||||
|
||||
where: filter.tumor_case ? {
|
||||
[Op.or]: [
|
||||
{ id: { [Op.in]: filter.tumor_case.split('|').map(term => Utils.uuid(term)) } },
|
||||
{
|
||||
case_number: {
|
||||
[Op.or]: filter.tumor_case.split('|').map(term => ({ [Op.iLike]: `%${term}%` }))
|
||||
}
|
||||
},
|
||||
]
|
||||
} : {},
|
||||
|
||||
},
|
||||
|
||||
{
|
||||
model: db.clinical_visits,
|
||||
as: 'visit',
|
||||
|
||||
where: filter.visit ? {
|
||||
[Op.or]: [
|
||||
{ id: { [Op.in]: filter.visit.split('|').map(term => Utils.uuid(term)) } },
|
||||
{
|
||||
visit_type: {
|
||||
[Op.or]: filter.visit.split('|').map(term => ({ [Op.iLike]: `%${term}%` }))
|
||||
}
|
||||
},
|
||||
]
|
||||
} : {},
|
||||
|
||||
},
|
||||
|
||||
{
|
||||
model: db.users,
|
||||
as: 'ordering_user',
|
||||
|
||||
where: filter.ordering_user ? {
|
||||
[Op.or]: [
|
||||
{ id: { [Op.in]: filter.ordering_user.split('|').map(term => Utils.uuid(term)) } },
|
||||
{
|
||||
firstName: {
|
||||
[Op.or]: filter.ordering_user.split('|').map(term => ({ [Op.iLike]: `%${term}%` }))
|
||||
}
|
||||
},
|
||||
]
|
||||
} : {},
|
||||
|
||||
},
|
||||
|
||||
|
||||
|
||||
];
|
||||
|
||||
if (filter) {
|
||||
if (filter.id) {
|
||||
where = {
|
||||
...where,
|
||||
['id']: Utils.uuid(filter.id),
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
if (filter.notes) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'lab_orders',
|
||||
'notes',
|
||||
filter.notes,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
if (filter.ordered_datetimeRange) {
|
||||
const [start, end] = filter.ordered_datetimeRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
ordered_datetime: {
|
||||
...where.ordered_datetime,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
ordered_datetime: {
|
||||
...where.ordered_datetime,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
if (filter.active !== undefined) {
|
||||
where = {
|
||||
...where,
|
||||
active: filter.active === true || filter.active === 'true'
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
if (filter.priority) {
|
||||
where = {
|
||||
...where,
|
||||
priority: filter.priority,
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.status) {
|
||||
where = {
|
||||
...where,
|
||||
status: filter.status,
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
if (filter.createdAtRange) {
|
||||
const [start, end] = filter.createdAtRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
['createdAt']: {
|
||||
...where.createdAt,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
['createdAt']: {
|
||||
...where.createdAt,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
const queryOptions = {
|
||||
where,
|
||||
include,
|
||||
distinct: true,
|
||||
order: filter.field && filter.sort
|
||||
? [[filter.field, filter.sort]]
|
||||
: [['createdAt', 'desc']],
|
||||
transaction: options?.transaction,
|
||||
logging: console.log
|
||||
};
|
||||
|
||||
if (!options?.countOnly) {
|
||||
queryOptions.limit = limit ? Number(limit) : undefined;
|
||||
queryOptions.offset = offset ? Number(offset) : undefined;
|
||||
}
|
||||
|
||||
try {
|
||||
const { rows, count } = await db.lab_orders.findAndCountAll(queryOptions);
|
||||
|
||||
return {
|
||||
rows: options?.countOnly ? [] : rows,
|
||||
count: count
|
||||
};
|
||||
} catch (error) {
|
||||
console.error('Error executing query:', error);
|
||||
throw error;
|
||||
}
|
||||
}
|
||||
|
||||
static async findAllAutocomplete(query, limit, offset, ) {
|
||||
let where = {};
|
||||
|
||||
|
||||
|
||||
if (query) {
|
||||
where = {
|
||||
[Op.or]: [
|
||||
{ ['id']: Utils.uuid(query) },
|
||||
Utils.ilike(
|
||||
'lab_orders',
|
||||
'notes',
|
||||
query,
|
||||
),
|
||||
],
|
||||
};
|
||||
}
|
||||
|
||||
const records = await db.lab_orders.findAll({
|
||||
attributes: [ 'id', 'notes' ],
|
||||
where,
|
||||
limit: limit ? Number(limit) : undefined,
|
||||
offset: offset ? Number(offset) : undefined,
|
||||
orderBy: [['notes', 'ASC']],
|
||||
});
|
||||
|
||||
return records.map((record) => ({
|
||||
id: record.id,
|
||||
label: record.notes,
|
||||
}));
|
||||
}
|
||||
|
||||
|
||||
};
|
||||
|
||||
514
backend/src/db/api/lab_result_items.js
Normal file
514
backend/src/db/api/lab_result_items.js
Normal file
@ -0,0 +1,514 @@
|
||||
|
||||
const db = require('../models');
|
||||
const FileDBApi = require('./file');
|
||||
const crypto = require('crypto');
|
||||
const Utils = require('../utils');
|
||||
|
||||
|
||||
|
||||
const Sequelize = db.Sequelize;
|
||||
const Op = Sequelize.Op;
|
||||
|
||||
module.exports = class Lab_result_itemsDBApi {
|
||||
|
||||
|
||||
|
||||
static async create(data, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const lab_result_items = await db.lab_result_items.create(
|
||||
{
|
||||
id: data.id || undefined,
|
||||
|
||||
test_name: data.test_name
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
value_text: data.value_text
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
value_numeric: data.value_numeric
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
unit: data.unit
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
reference_range: data.reference_range
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
flag: data.flag
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
importHash: data.importHash || null,
|
||||
createdById: currentUser.id,
|
||||
updatedById: currentUser.id,
|
||||
},
|
||||
{ transaction },
|
||||
);
|
||||
|
||||
|
||||
await lab_result_items.setLab_result( data.lab_result || null, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
return lab_result_items;
|
||||
}
|
||||
|
||||
|
||||
static async bulkImport(data, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
// Prepare data - wrapping individual data transformations in a map() method
|
||||
const lab_result_itemsData = data.map((item, index) => ({
|
||||
id: item.id || undefined,
|
||||
|
||||
test_name: item.test_name
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
value_text: item.value_text
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
value_numeric: item.value_numeric
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
unit: item.unit
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
reference_range: item.reference_range
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
flag: item.flag
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
importHash: item.importHash || null,
|
||||
createdById: currentUser.id,
|
||||
updatedById: currentUser.id,
|
||||
createdAt: new Date(Date.now() + index * 1000),
|
||||
}));
|
||||
|
||||
// Bulk create items
|
||||
const lab_result_items = await db.lab_result_items.bulkCreate(lab_result_itemsData, { transaction });
|
||||
|
||||
// For each item created, replace relation files
|
||||
|
||||
|
||||
return lab_result_items;
|
||||
}
|
||||
|
||||
static async update(id, data, options) {
|
||||
const currentUser = (options && options.currentUser) || {id: null};
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
|
||||
const lab_result_items = await db.lab_result_items.findByPk(id, {}, {transaction});
|
||||
|
||||
|
||||
|
||||
|
||||
const updatePayload = {};
|
||||
|
||||
if (data.test_name !== undefined) updatePayload.test_name = data.test_name;
|
||||
|
||||
|
||||
if (data.value_text !== undefined) updatePayload.value_text = data.value_text;
|
||||
|
||||
|
||||
if (data.value_numeric !== undefined) updatePayload.value_numeric = data.value_numeric;
|
||||
|
||||
|
||||
if (data.unit !== undefined) updatePayload.unit = data.unit;
|
||||
|
||||
|
||||
if (data.reference_range !== undefined) updatePayload.reference_range = data.reference_range;
|
||||
|
||||
|
||||
if (data.flag !== undefined) updatePayload.flag = data.flag;
|
||||
|
||||
|
||||
updatePayload.updatedById = currentUser.id;
|
||||
|
||||
await lab_result_items.update(updatePayload, {transaction});
|
||||
|
||||
|
||||
|
||||
if (data.lab_result !== undefined) {
|
||||
await lab_result_items.setLab_result(
|
||||
|
||||
data.lab_result,
|
||||
|
||||
{ transaction }
|
||||
);
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
return lab_result_items;
|
||||
}
|
||||
|
||||
static async deleteByIds(ids, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const lab_result_items = await db.lab_result_items.findAll({
|
||||
where: {
|
||||
id: {
|
||||
[Op.in]: ids,
|
||||
},
|
||||
},
|
||||
transaction,
|
||||
});
|
||||
|
||||
await db.sequelize.transaction(async (transaction) => {
|
||||
for (const record of lab_result_items) {
|
||||
await record.update(
|
||||
{deletedBy: currentUser.id},
|
||||
{transaction}
|
||||
);
|
||||
}
|
||||
for (const record of lab_result_items) {
|
||||
await record.destroy({transaction});
|
||||
}
|
||||
});
|
||||
|
||||
|
||||
return lab_result_items;
|
||||
}
|
||||
|
||||
static async remove(id, options) {
|
||||
const currentUser = (options && options.currentUser) || {id: null};
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const lab_result_items = await db.lab_result_items.findByPk(id, options);
|
||||
|
||||
await lab_result_items.update({
|
||||
deletedBy: currentUser.id
|
||||
}, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
await lab_result_items.destroy({
|
||||
transaction
|
||||
});
|
||||
|
||||
return lab_result_items;
|
||||
}
|
||||
|
||||
static async findBy(where, options) {
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const lab_result_items = await db.lab_result_items.findOne(
|
||||
{ where },
|
||||
{ transaction },
|
||||
);
|
||||
|
||||
if (!lab_result_items) {
|
||||
return lab_result_items;
|
||||
}
|
||||
|
||||
const output = lab_result_items.get({plain: true});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
output.lab_result = await lab_result_items.getLab_result({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
|
||||
return output;
|
||||
}
|
||||
|
||||
static async findAll(
|
||||
filter,
|
||||
options
|
||||
) {
|
||||
const limit = filter.limit || 0;
|
||||
let offset = 0;
|
||||
let where = {};
|
||||
const currentPage = +filter.page;
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
offset = currentPage * limit;
|
||||
|
||||
const orderBy = null;
|
||||
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
let include = [
|
||||
|
||||
{
|
||||
model: db.lab_results,
|
||||
as: 'lab_result',
|
||||
|
||||
where: filter.lab_result ? {
|
||||
[Op.or]: [
|
||||
{ id: { [Op.in]: filter.lab_result.split('|').map(term => Utils.uuid(term)) } },
|
||||
{
|
||||
panel_name: {
|
||||
[Op.or]: filter.lab_result.split('|').map(term => ({ [Op.iLike]: `%${term}%` }))
|
||||
}
|
||||
},
|
||||
]
|
||||
} : {},
|
||||
|
||||
},
|
||||
|
||||
|
||||
|
||||
];
|
||||
|
||||
if (filter) {
|
||||
if (filter.id) {
|
||||
where = {
|
||||
...where,
|
||||
['id']: Utils.uuid(filter.id),
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
if (filter.test_name) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'lab_result_items',
|
||||
'test_name',
|
||||
filter.test_name,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.value_text) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'lab_result_items',
|
||||
'value_text',
|
||||
filter.value_text,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.unit) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'lab_result_items',
|
||||
'unit',
|
||||
filter.unit,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.reference_range) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'lab_result_items',
|
||||
'reference_range',
|
||||
filter.reference_range,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
if (filter.value_numericRange) {
|
||||
const [start, end] = filter.value_numericRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
value_numeric: {
|
||||
...where.value_numeric,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
value_numeric: {
|
||||
...where.value_numeric,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
if (filter.active !== undefined) {
|
||||
where = {
|
||||
...where,
|
||||
active: filter.active === true || filter.active === 'true'
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
if (filter.flag) {
|
||||
where = {
|
||||
...where,
|
||||
flag: filter.flag,
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
if (filter.createdAtRange) {
|
||||
const [start, end] = filter.createdAtRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
['createdAt']: {
|
||||
...where.createdAt,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
['createdAt']: {
|
||||
...where.createdAt,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
const queryOptions = {
|
||||
where,
|
||||
include,
|
||||
distinct: true,
|
||||
order: filter.field && filter.sort
|
||||
? [[filter.field, filter.sort]]
|
||||
: [['createdAt', 'desc']],
|
||||
transaction: options?.transaction,
|
||||
logging: console.log
|
||||
};
|
||||
|
||||
if (!options?.countOnly) {
|
||||
queryOptions.limit = limit ? Number(limit) : undefined;
|
||||
queryOptions.offset = offset ? Number(offset) : undefined;
|
||||
}
|
||||
|
||||
try {
|
||||
const { rows, count } = await db.lab_result_items.findAndCountAll(queryOptions);
|
||||
|
||||
return {
|
||||
rows: options?.countOnly ? [] : rows,
|
||||
count: count
|
||||
};
|
||||
} catch (error) {
|
||||
console.error('Error executing query:', error);
|
||||
throw error;
|
||||
}
|
||||
}
|
||||
|
||||
static async findAllAutocomplete(query, limit, offset, ) {
|
||||
let where = {};
|
||||
|
||||
|
||||
|
||||
if (query) {
|
||||
where = {
|
||||
[Op.or]: [
|
||||
{ ['id']: Utils.uuid(query) },
|
||||
Utils.ilike(
|
||||
'lab_result_items',
|
||||
'test_name',
|
||||
query,
|
||||
),
|
||||
],
|
||||
};
|
||||
}
|
||||
|
||||
const records = await db.lab_result_items.findAll({
|
||||
attributes: [ 'id', 'test_name' ],
|
||||
where,
|
||||
limit: limit ? Number(limit) : undefined,
|
||||
offset: offset ? Number(offset) : undefined,
|
||||
orderBy: [['test_name', 'ASC']],
|
||||
});
|
||||
|
||||
return records.map((record) => ({
|
||||
id: record.id,
|
||||
label: record.test_name,
|
||||
}));
|
||||
}
|
||||
|
||||
|
||||
};
|
||||
|
||||
512
backend/src/db/api/lab_results.js
Normal file
512
backend/src/db/api/lab_results.js
Normal file
@ -0,0 +1,512 @@
|
||||
|
||||
const db = require('../models');
|
||||
const FileDBApi = require('./file');
|
||||
const crypto = require('crypto');
|
||||
const Utils = require('../utils');
|
||||
|
||||
|
||||
|
||||
const Sequelize = db.Sequelize;
|
||||
const Op = Sequelize.Op;
|
||||
|
||||
module.exports = class Lab_resultsDBApi {
|
||||
|
||||
|
||||
|
||||
static async create(data, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const lab_results = await db.lab_results.create(
|
||||
{
|
||||
id: data.id || undefined,
|
||||
|
||||
result_datetime: data.result_datetime
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
panel_name: data.panel_name
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
result_status: data.result_status
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
summary: data.summary
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
importHash: data.importHash || null,
|
||||
createdById: currentUser.id,
|
||||
updatedById: currentUser.id,
|
||||
},
|
||||
{ transaction },
|
||||
);
|
||||
|
||||
|
||||
await lab_results.setLab_order( data.lab_order || null, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
await FileDBApi.replaceRelationFiles(
|
||||
{
|
||||
belongsTo: db.lab_results.getTableName(),
|
||||
belongsToColumn: 'report_file',
|
||||
belongsToId: lab_results.id,
|
||||
},
|
||||
data.report_file,
|
||||
options,
|
||||
);
|
||||
|
||||
|
||||
return lab_results;
|
||||
}
|
||||
|
||||
|
||||
static async bulkImport(data, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
// Prepare data - wrapping individual data transformations in a map() method
|
||||
const lab_resultsData = data.map((item, index) => ({
|
||||
id: item.id || undefined,
|
||||
|
||||
result_datetime: item.result_datetime
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
panel_name: item.panel_name
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
result_status: item.result_status
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
summary: item.summary
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
importHash: item.importHash || null,
|
||||
createdById: currentUser.id,
|
||||
updatedById: currentUser.id,
|
||||
createdAt: new Date(Date.now() + index * 1000),
|
||||
}));
|
||||
|
||||
// Bulk create items
|
||||
const lab_results = await db.lab_results.bulkCreate(lab_resultsData, { transaction });
|
||||
|
||||
// For each item created, replace relation files
|
||||
|
||||
for (let i = 0; i < lab_results.length; i++) {
|
||||
await FileDBApi.replaceRelationFiles(
|
||||
{
|
||||
belongsTo: db.lab_results.getTableName(),
|
||||
belongsToColumn: 'report_file',
|
||||
belongsToId: lab_results[i].id,
|
||||
},
|
||||
data[i].report_file,
|
||||
options,
|
||||
);
|
||||
}
|
||||
|
||||
|
||||
return lab_results;
|
||||
}
|
||||
|
||||
static async update(id, data, options) {
|
||||
const currentUser = (options && options.currentUser) || {id: null};
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
|
||||
const lab_results = await db.lab_results.findByPk(id, {}, {transaction});
|
||||
|
||||
|
||||
|
||||
|
||||
const updatePayload = {};
|
||||
|
||||
if (data.result_datetime !== undefined) updatePayload.result_datetime = data.result_datetime;
|
||||
|
||||
|
||||
if (data.panel_name !== undefined) updatePayload.panel_name = data.panel_name;
|
||||
|
||||
|
||||
if (data.result_status !== undefined) updatePayload.result_status = data.result_status;
|
||||
|
||||
|
||||
if (data.summary !== undefined) updatePayload.summary = data.summary;
|
||||
|
||||
|
||||
updatePayload.updatedById = currentUser.id;
|
||||
|
||||
await lab_results.update(updatePayload, {transaction});
|
||||
|
||||
|
||||
|
||||
if (data.lab_order !== undefined) {
|
||||
await lab_results.setLab_order(
|
||||
|
||||
data.lab_order,
|
||||
|
||||
{ transaction }
|
||||
);
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
await FileDBApi.replaceRelationFiles(
|
||||
{
|
||||
belongsTo: db.lab_results.getTableName(),
|
||||
belongsToColumn: 'report_file',
|
||||
belongsToId: lab_results.id,
|
||||
},
|
||||
data.report_file,
|
||||
options,
|
||||
);
|
||||
|
||||
|
||||
return lab_results;
|
||||
}
|
||||
|
||||
static async deleteByIds(ids, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const lab_results = await db.lab_results.findAll({
|
||||
where: {
|
||||
id: {
|
||||
[Op.in]: ids,
|
||||
},
|
||||
},
|
||||
transaction,
|
||||
});
|
||||
|
||||
await db.sequelize.transaction(async (transaction) => {
|
||||
for (const record of lab_results) {
|
||||
await record.update(
|
||||
{deletedBy: currentUser.id},
|
||||
{transaction}
|
||||
);
|
||||
}
|
||||
for (const record of lab_results) {
|
||||
await record.destroy({transaction});
|
||||
}
|
||||
});
|
||||
|
||||
|
||||
return lab_results;
|
||||
}
|
||||
|
||||
static async remove(id, options) {
|
||||
const currentUser = (options && options.currentUser) || {id: null};
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const lab_results = await db.lab_results.findByPk(id, options);
|
||||
|
||||
await lab_results.update({
|
||||
deletedBy: currentUser.id
|
||||
}, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
await lab_results.destroy({
|
||||
transaction
|
||||
});
|
||||
|
||||
return lab_results;
|
||||
}
|
||||
|
||||
static async findBy(where, options) {
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const lab_results = await db.lab_results.findOne(
|
||||
{ where },
|
||||
{ transaction },
|
||||
);
|
||||
|
||||
if (!lab_results) {
|
||||
return lab_results;
|
||||
}
|
||||
|
||||
const output = lab_results.get({plain: true});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
output.lab_result_items_lab_result = await lab_results.getLab_result_items_lab_result({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
output.lab_order = await lab_results.getLab_order({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
output.report_file = await lab_results.getReport_file({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
|
||||
return output;
|
||||
}
|
||||
|
||||
static async findAll(
|
||||
filter,
|
||||
options
|
||||
) {
|
||||
const limit = filter.limit || 0;
|
||||
let offset = 0;
|
||||
let where = {};
|
||||
const currentPage = +filter.page;
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
offset = currentPage * limit;
|
||||
|
||||
const orderBy = null;
|
||||
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
let include = [
|
||||
|
||||
{
|
||||
model: db.lab_orders,
|
||||
as: 'lab_order',
|
||||
|
||||
where: filter.lab_order ? {
|
||||
[Op.or]: [
|
||||
{ id: { [Op.in]: filter.lab_order.split('|').map(term => Utils.uuid(term)) } },
|
||||
{
|
||||
notes: {
|
||||
[Op.or]: filter.lab_order.split('|').map(term => ({ [Op.iLike]: `%${term}%` }))
|
||||
}
|
||||
},
|
||||
]
|
||||
} : {},
|
||||
|
||||
},
|
||||
|
||||
|
||||
|
||||
{
|
||||
model: db.file,
|
||||
as: 'report_file',
|
||||
},
|
||||
|
||||
];
|
||||
|
||||
if (filter) {
|
||||
if (filter.id) {
|
||||
where = {
|
||||
...where,
|
||||
['id']: Utils.uuid(filter.id),
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
if (filter.panel_name) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'lab_results',
|
||||
'panel_name',
|
||||
filter.panel_name,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.summary) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'lab_results',
|
||||
'summary',
|
||||
filter.summary,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
if (filter.result_datetimeRange) {
|
||||
const [start, end] = filter.result_datetimeRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
result_datetime: {
|
||||
...where.result_datetime,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
result_datetime: {
|
||||
...where.result_datetime,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
if (filter.active !== undefined) {
|
||||
where = {
|
||||
...where,
|
||||
active: filter.active === true || filter.active === 'true'
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
if (filter.result_status) {
|
||||
where = {
|
||||
...where,
|
||||
result_status: filter.result_status,
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
if (filter.createdAtRange) {
|
||||
const [start, end] = filter.createdAtRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
['createdAt']: {
|
||||
...where.createdAt,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
['createdAt']: {
|
||||
...where.createdAt,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
const queryOptions = {
|
||||
where,
|
||||
include,
|
||||
distinct: true,
|
||||
order: filter.field && filter.sort
|
||||
? [[filter.field, filter.sort]]
|
||||
: [['createdAt', 'desc']],
|
||||
transaction: options?.transaction,
|
||||
logging: console.log
|
||||
};
|
||||
|
||||
if (!options?.countOnly) {
|
||||
queryOptions.limit = limit ? Number(limit) : undefined;
|
||||
queryOptions.offset = offset ? Number(offset) : undefined;
|
||||
}
|
||||
|
||||
try {
|
||||
const { rows, count } = await db.lab_results.findAndCountAll(queryOptions);
|
||||
|
||||
return {
|
||||
rows: options?.countOnly ? [] : rows,
|
||||
count: count
|
||||
};
|
||||
} catch (error) {
|
||||
console.error('Error executing query:', error);
|
||||
throw error;
|
||||
}
|
||||
}
|
||||
|
||||
static async findAllAutocomplete(query, limit, offset, ) {
|
||||
let where = {};
|
||||
|
||||
|
||||
|
||||
if (query) {
|
||||
where = {
|
||||
[Op.or]: [
|
||||
{ ['id']: Utils.uuid(query) },
|
||||
Utils.ilike(
|
||||
'lab_results',
|
||||
'panel_name',
|
||||
query,
|
||||
),
|
||||
],
|
||||
};
|
||||
}
|
||||
|
||||
const records = await db.lab_results.findAll({
|
||||
attributes: [ 'id', 'panel_name' ],
|
||||
where,
|
||||
limit: limit ? Number(limit) : undefined,
|
||||
offset: offset ? Number(offset) : undefined,
|
||||
orderBy: [['panel_name', 'ASC']],
|
||||
});
|
||||
|
||||
return records.map((record) => ({
|
||||
id: record.id,
|
||||
label: record.panel_name,
|
||||
}));
|
||||
}
|
||||
|
||||
|
||||
};
|
||||
|
||||
553
backend/src/db/api/medication_administrations.js
Normal file
553
backend/src/db/api/medication_administrations.js
Normal file
@ -0,0 +1,553 @@
|
||||
|
||||
const db = require('../models');
|
||||
const FileDBApi = require('./file');
|
||||
const crypto = require('crypto');
|
||||
const Utils = require('../utils');
|
||||
|
||||
|
||||
|
||||
const Sequelize = db.Sequelize;
|
||||
const Op = Sequelize.Op;
|
||||
|
||||
module.exports = class Medication_administrationsDBApi {
|
||||
|
||||
|
||||
|
||||
static async create(data, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const medication_administrations = await db.medication_administrations.create(
|
||||
{
|
||||
id: data.id || undefined,
|
||||
|
||||
start_datetime: data.start_datetime
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
end_datetime: data.end_datetime
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
status: data.status
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
remarks: data.remarks
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
importHash: data.importHash || null,
|
||||
createdById: currentUser.id,
|
||||
updatedById: currentUser.id,
|
||||
},
|
||||
{ transaction },
|
||||
);
|
||||
|
||||
|
||||
await medication_administrations.setPatient( data.patient || null, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
await medication_administrations.setChemo_order( data.chemo_order || null, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
await medication_administrations.setAdministered_by_user( data.administered_by_user || null, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
return medication_administrations;
|
||||
}
|
||||
|
||||
|
||||
static async bulkImport(data, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
// Prepare data - wrapping individual data transformations in a map() method
|
||||
const medication_administrationsData = data.map((item, index) => ({
|
||||
id: item.id || undefined,
|
||||
|
||||
start_datetime: item.start_datetime
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
end_datetime: item.end_datetime
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
status: item.status
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
remarks: item.remarks
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
importHash: item.importHash || null,
|
||||
createdById: currentUser.id,
|
||||
updatedById: currentUser.id,
|
||||
createdAt: new Date(Date.now() + index * 1000),
|
||||
}));
|
||||
|
||||
// Bulk create items
|
||||
const medication_administrations = await db.medication_administrations.bulkCreate(medication_administrationsData, { transaction });
|
||||
|
||||
// For each item created, replace relation files
|
||||
|
||||
|
||||
return medication_administrations;
|
||||
}
|
||||
|
||||
static async update(id, data, options) {
|
||||
const currentUser = (options && options.currentUser) || {id: null};
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
|
||||
const medication_administrations = await db.medication_administrations.findByPk(id, {}, {transaction});
|
||||
|
||||
|
||||
|
||||
|
||||
const updatePayload = {};
|
||||
|
||||
if (data.start_datetime !== undefined) updatePayload.start_datetime = data.start_datetime;
|
||||
|
||||
|
||||
if (data.end_datetime !== undefined) updatePayload.end_datetime = data.end_datetime;
|
||||
|
||||
|
||||
if (data.status !== undefined) updatePayload.status = data.status;
|
||||
|
||||
|
||||
if (data.remarks !== undefined) updatePayload.remarks = data.remarks;
|
||||
|
||||
|
||||
updatePayload.updatedById = currentUser.id;
|
||||
|
||||
await medication_administrations.update(updatePayload, {transaction});
|
||||
|
||||
|
||||
|
||||
if (data.patient !== undefined) {
|
||||
await medication_administrations.setPatient(
|
||||
|
||||
data.patient,
|
||||
|
||||
{ transaction }
|
||||
);
|
||||
}
|
||||
|
||||
if (data.chemo_order !== undefined) {
|
||||
await medication_administrations.setChemo_order(
|
||||
|
||||
data.chemo_order,
|
||||
|
||||
{ transaction }
|
||||
);
|
||||
}
|
||||
|
||||
if (data.administered_by_user !== undefined) {
|
||||
await medication_administrations.setAdministered_by_user(
|
||||
|
||||
data.administered_by_user,
|
||||
|
||||
{ transaction }
|
||||
);
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
return medication_administrations;
|
||||
}
|
||||
|
||||
static async deleteByIds(ids, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const medication_administrations = await db.medication_administrations.findAll({
|
||||
where: {
|
||||
id: {
|
||||
[Op.in]: ids,
|
||||
},
|
||||
},
|
||||
transaction,
|
||||
});
|
||||
|
||||
await db.sequelize.transaction(async (transaction) => {
|
||||
for (const record of medication_administrations) {
|
||||
await record.update(
|
||||
{deletedBy: currentUser.id},
|
||||
{transaction}
|
||||
);
|
||||
}
|
||||
for (const record of medication_administrations) {
|
||||
await record.destroy({transaction});
|
||||
}
|
||||
});
|
||||
|
||||
|
||||
return medication_administrations;
|
||||
}
|
||||
|
||||
static async remove(id, options) {
|
||||
const currentUser = (options && options.currentUser) || {id: null};
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const medication_administrations = await db.medication_administrations.findByPk(id, options);
|
||||
|
||||
await medication_administrations.update({
|
||||
deletedBy: currentUser.id
|
||||
}, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
await medication_administrations.destroy({
|
||||
transaction
|
||||
});
|
||||
|
||||
return medication_administrations;
|
||||
}
|
||||
|
||||
static async findBy(where, options) {
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const medication_administrations = await db.medication_administrations.findOne(
|
||||
{ where },
|
||||
{ transaction },
|
||||
);
|
||||
|
||||
if (!medication_administrations) {
|
||||
return medication_administrations;
|
||||
}
|
||||
|
||||
const output = medication_administrations.get({plain: true});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
output.patient = await medication_administrations.getPatient({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
output.chemo_order = await medication_administrations.getChemo_order({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
output.administered_by_user = await medication_administrations.getAdministered_by_user({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
|
||||
return output;
|
||||
}
|
||||
|
||||
static async findAll(
|
||||
filter,
|
||||
options
|
||||
) {
|
||||
const limit = filter.limit || 0;
|
||||
let offset = 0;
|
||||
let where = {};
|
||||
const currentPage = +filter.page;
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
offset = currentPage * limit;
|
||||
|
||||
const orderBy = null;
|
||||
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
let include = [
|
||||
|
||||
{
|
||||
model: db.patients,
|
||||
as: 'patient',
|
||||
|
||||
where: filter.patient ? {
|
||||
[Op.or]: [
|
||||
{ id: { [Op.in]: filter.patient.split('|').map(term => Utils.uuid(term)) } },
|
||||
{
|
||||
full_name: {
|
||||
[Op.or]: filter.patient.split('|').map(term => ({ [Op.iLike]: `%${term}%` }))
|
||||
}
|
||||
},
|
||||
]
|
||||
} : {},
|
||||
|
||||
},
|
||||
|
||||
{
|
||||
model: db.chemotherapy_orders,
|
||||
as: 'chemo_order',
|
||||
|
||||
where: filter.chemo_order ? {
|
||||
[Op.or]: [
|
||||
{ id: { [Op.in]: filter.chemo_order.split('|').map(term => Utils.uuid(term)) } },
|
||||
{
|
||||
notes: {
|
||||
[Op.or]: filter.chemo_order.split('|').map(term => ({ [Op.iLike]: `%${term}%` }))
|
||||
}
|
||||
},
|
||||
]
|
||||
} : {},
|
||||
|
||||
},
|
||||
|
||||
{
|
||||
model: db.users,
|
||||
as: 'administered_by_user',
|
||||
|
||||
where: filter.administered_by_user ? {
|
||||
[Op.or]: [
|
||||
{ id: { [Op.in]: filter.administered_by_user.split('|').map(term => Utils.uuid(term)) } },
|
||||
{
|
||||
firstName: {
|
||||
[Op.or]: filter.administered_by_user.split('|').map(term => ({ [Op.iLike]: `%${term}%` }))
|
||||
}
|
||||
},
|
||||
]
|
||||
} : {},
|
||||
|
||||
},
|
||||
|
||||
|
||||
|
||||
];
|
||||
|
||||
if (filter) {
|
||||
if (filter.id) {
|
||||
where = {
|
||||
...where,
|
||||
['id']: Utils.uuid(filter.id),
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
if (filter.remarks) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'medication_administrations',
|
||||
'remarks',
|
||||
filter.remarks,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
if (filter.start_datetimeRange) {
|
||||
const [start, end] = filter.start_datetimeRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
start_datetime: {
|
||||
...where.start_datetime,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
start_datetime: {
|
||||
...where.start_datetime,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
|
||||
if (filter.end_datetimeRange) {
|
||||
const [start, end] = filter.end_datetimeRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
end_datetime: {
|
||||
...where.end_datetime,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
end_datetime: {
|
||||
...where.end_datetime,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
if (filter.active !== undefined) {
|
||||
where = {
|
||||
...where,
|
||||
active: filter.active === true || filter.active === 'true'
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
if (filter.status) {
|
||||
where = {
|
||||
...where,
|
||||
status: filter.status,
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
if (filter.createdAtRange) {
|
||||
const [start, end] = filter.createdAtRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
['createdAt']: {
|
||||
...where.createdAt,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
['createdAt']: {
|
||||
...where.createdAt,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
const queryOptions = {
|
||||
where,
|
||||
include,
|
||||
distinct: true,
|
||||
order: filter.field && filter.sort
|
||||
? [[filter.field, filter.sort]]
|
||||
: [['createdAt', 'desc']],
|
||||
transaction: options?.transaction,
|
||||
logging: console.log
|
||||
};
|
||||
|
||||
if (!options?.countOnly) {
|
||||
queryOptions.limit = limit ? Number(limit) : undefined;
|
||||
queryOptions.offset = offset ? Number(offset) : undefined;
|
||||
}
|
||||
|
||||
try {
|
||||
const { rows, count } = await db.medication_administrations.findAndCountAll(queryOptions);
|
||||
|
||||
return {
|
||||
rows: options?.countOnly ? [] : rows,
|
||||
count: count
|
||||
};
|
||||
} catch (error) {
|
||||
console.error('Error executing query:', error);
|
||||
throw error;
|
||||
}
|
||||
}
|
||||
|
||||
static async findAllAutocomplete(query, limit, offset, ) {
|
||||
let where = {};
|
||||
|
||||
|
||||
|
||||
if (query) {
|
||||
where = {
|
||||
[Op.or]: [
|
||||
{ ['id']: Utils.uuid(query) },
|
||||
Utils.ilike(
|
||||
'medication_administrations',
|
||||
'remarks',
|
||||
query,
|
||||
),
|
||||
],
|
||||
};
|
||||
}
|
||||
|
||||
const records = await db.medication_administrations.findAll({
|
||||
attributes: [ 'id', 'remarks' ],
|
||||
where,
|
||||
limit: limit ? Number(limit) : undefined,
|
||||
offset: offset ? Number(offset) : undefined,
|
||||
orderBy: [['remarks', 'ASC']],
|
||||
});
|
||||
|
||||
return records.map((record) => ({
|
||||
id: record.id,
|
||||
label: record.remarks,
|
||||
}));
|
||||
}
|
||||
|
||||
|
||||
};
|
||||
|
||||
608
backend/src/db/api/patient_dossiers.js
Normal file
608
backend/src/db/api/patient_dossiers.js
Normal file
@ -0,0 +1,608 @@
|
||||
|
||||
const db = require('../models');
|
||||
const FileDBApi = require('./file');
|
||||
const crypto = require('crypto');
|
||||
const Utils = require('../utils');
|
||||
|
||||
|
||||
|
||||
const Sequelize = db.Sequelize;
|
||||
const Op = Sequelize.Op;
|
||||
|
||||
module.exports = class Patient_dossiersDBApi {
|
||||
|
||||
|
||||
|
||||
static async create(data, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const patient_dossiers = await db.patient_dossiers.create(
|
||||
{
|
||||
id: data.id || undefined,
|
||||
|
||||
chief_complaint: data.chief_complaint
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
history_of_present_illness: data.history_of_present_illness
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
past_medical_history: data.past_medical_history
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
surgical_history: data.surgical_history
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
family_history: data.family_history
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
allergies: data.allergies
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
current_medications: data.current_medications
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
last_updated_on: data.last_updated_on
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
importHash: data.importHash || null,
|
||||
createdById: currentUser.id,
|
||||
updatedById: currentUser.id,
|
||||
},
|
||||
{ transaction },
|
||||
);
|
||||
|
||||
|
||||
await patient_dossiers.setPatient( data.patient || null, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
await FileDBApi.replaceRelationFiles(
|
||||
{
|
||||
belongsTo: db.patient_dossiers.getTableName(),
|
||||
belongsToColumn: 'documents',
|
||||
belongsToId: patient_dossiers.id,
|
||||
},
|
||||
data.documents,
|
||||
options,
|
||||
);
|
||||
|
||||
|
||||
return patient_dossiers;
|
||||
}
|
||||
|
||||
|
||||
static async bulkImport(data, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
// Prepare data - wrapping individual data transformations in a map() method
|
||||
const patient_dossiersData = data.map((item, index) => ({
|
||||
id: item.id || undefined,
|
||||
|
||||
chief_complaint: item.chief_complaint
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
history_of_present_illness: item.history_of_present_illness
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
past_medical_history: item.past_medical_history
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
surgical_history: item.surgical_history
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
family_history: item.family_history
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
allergies: item.allergies
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
current_medications: item.current_medications
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
last_updated_on: item.last_updated_on
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
importHash: item.importHash || null,
|
||||
createdById: currentUser.id,
|
||||
updatedById: currentUser.id,
|
||||
createdAt: new Date(Date.now() + index * 1000),
|
||||
}));
|
||||
|
||||
// Bulk create items
|
||||
const patient_dossiers = await db.patient_dossiers.bulkCreate(patient_dossiersData, { transaction });
|
||||
|
||||
// For each item created, replace relation files
|
||||
|
||||
for (let i = 0; i < patient_dossiers.length; i++) {
|
||||
await FileDBApi.replaceRelationFiles(
|
||||
{
|
||||
belongsTo: db.patient_dossiers.getTableName(),
|
||||
belongsToColumn: 'documents',
|
||||
belongsToId: patient_dossiers[i].id,
|
||||
},
|
||||
data[i].documents,
|
||||
options,
|
||||
);
|
||||
}
|
||||
|
||||
|
||||
return patient_dossiers;
|
||||
}
|
||||
|
||||
static async update(id, data, options) {
|
||||
const currentUser = (options && options.currentUser) || {id: null};
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
|
||||
const patient_dossiers = await db.patient_dossiers.findByPk(id, {}, {transaction});
|
||||
|
||||
|
||||
|
||||
|
||||
const updatePayload = {};
|
||||
|
||||
if (data.chief_complaint !== undefined) updatePayload.chief_complaint = data.chief_complaint;
|
||||
|
||||
|
||||
if (data.history_of_present_illness !== undefined) updatePayload.history_of_present_illness = data.history_of_present_illness;
|
||||
|
||||
|
||||
if (data.past_medical_history !== undefined) updatePayload.past_medical_history = data.past_medical_history;
|
||||
|
||||
|
||||
if (data.surgical_history !== undefined) updatePayload.surgical_history = data.surgical_history;
|
||||
|
||||
|
||||
if (data.family_history !== undefined) updatePayload.family_history = data.family_history;
|
||||
|
||||
|
||||
if (data.allergies !== undefined) updatePayload.allergies = data.allergies;
|
||||
|
||||
|
||||
if (data.current_medications !== undefined) updatePayload.current_medications = data.current_medications;
|
||||
|
||||
|
||||
if (data.last_updated_on !== undefined) updatePayload.last_updated_on = data.last_updated_on;
|
||||
|
||||
|
||||
updatePayload.updatedById = currentUser.id;
|
||||
|
||||
await patient_dossiers.update(updatePayload, {transaction});
|
||||
|
||||
|
||||
|
||||
if (data.patient !== undefined) {
|
||||
await patient_dossiers.setPatient(
|
||||
|
||||
data.patient,
|
||||
|
||||
{ transaction }
|
||||
);
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
await FileDBApi.replaceRelationFiles(
|
||||
{
|
||||
belongsTo: db.patient_dossiers.getTableName(),
|
||||
belongsToColumn: 'documents',
|
||||
belongsToId: patient_dossiers.id,
|
||||
},
|
||||
data.documents,
|
||||
options,
|
||||
);
|
||||
|
||||
|
||||
return patient_dossiers;
|
||||
}
|
||||
|
||||
static async deleteByIds(ids, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const patient_dossiers = await db.patient_dossiers.findAll({
|
||||
where: {
|
||||
id: {
|
||||
[Op.in]: ids,
|
||||
},
|
||||
},
|
||||
transaction,
|
||||
});
|
||||
|
||||
await db.sequelize.transaction(async (transaction) => {
|
||||
for (const record of patient_dossiers) {
|
||||
await record.update(
|
||||
{deletedBy: currentUser.id},
|
||||
{transaction}
|
||||
);
|
||||
}
|
||||
for (const record of patient_dossiers) {
|
||||
await record.destroy({transaction});
|
||||
}
|
||||
});
|
||||
|
||||
|
||||
return patient_dossiers;
|
||||
}
|
||||
|
||||
static async remove(id, options) {
|
||||
const currentUser = (options && options.currentUser) || {id: null};
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const patient_dossiers = await db.patient_dossiers.findByPk(id, options);
|
||||
|
||||
await patient_dossiers.update({
|
||||
deletedBy: currentUser.id
|
||||
}, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
await patient_dossiers.destroy({
|
||||
transaction
|
||||
});
|
||||
|
||||
return patient_dossiers;
|
||||
}
|
||||
|
||||
static async findBy(where, options) {
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const patient_dossiers = await db.patient_dossiers.findOne(
|
||||
{ where },
|
||||
{ transaction },
|
||||
);
|
||||
|
||||
if (!patient_dossiers) {
|
||||
return patient_dossiers;
|
||||
}
|
||||
|
||||
const output = patient_dossiers.get({plain: true});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
output.patient = await patient_dossiers.getPatient({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
output.documents = await patient_dossiers.getDocuments({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
|
||||
return output;
|
||||
}
|
||||
|
||||
static async findAll(
|
||||
filter,
|
||||
options
|
||||
) {
|
||||
const limit = filter.limit || 0;
|
||||
let offset = 0;
|
||||
let where = {};
|
||||
const currentPage = +filter.page;
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
offset = currentPage * limit;
|
||||
|
||||
const orderBy = null;
|
||||
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
let include = [
|
||||
|
||||
{
|
||||
model: db.patients,
|
||||
as: 'patient',
|
||||
|
||||
where: filter.patient ? {
|
||||
[Op.or]: [
|
||||
{ id: { [Op.in]: filter.patient.split('|').map(term => Utils.uuid(term)) } },
|
||||
{
|
||||
full_name: {
|
||||
[Op.or]: filter.patient.split('|').map(term => ({ [Op.iLike]: `%${term}%` }))
|
||||
}
|
||||
},
|
||||
]
|
||||
} : {},
|
||||
|
||||
},
|
||||
|
||||
|
||||
|
||||
{
|
||||
model: db.file,
|
||||
as: 'documents',
|
||||
},
|
||||
|
||||
];
|
||||
|
||||
if (filter) {
|
||||
if (filter.id) {
|
||||
where = {
|
||||
...where,
|
||||
['id']: Utils.uuid(filter.id),
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
if (filter.chief_complaint) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'patient_dossiers',
|
||||
'chief_complaint',
|
||||
filter.chief_complaint,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.history_of_present_illness) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'patient_dossiers',
|
||||
'history_of_present_illness',
|
||||
filter.history_of_present_illness,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.past_medical_history) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'patient_dossiers',
|
||||
'past_medical_history',
|
||||
filter.past_medical_history,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.surgical_history) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'patient_dossiers',
|
||||
'surgical_history',
|
||||
filter.surgical_history,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.family_history) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'patient_dossiers',
|
||||
'family_history',
|
||||
filter.family_history,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.allergies) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'patient_dossiers',
|
||||
'allergies',
|
||||
filter.allergies,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.current_medications) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'patient_dossiers',
|
||||
'current_medications',
|
||||
filter.current_medications,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
if (filter.last_updated_onRange) {
|
||||
const [start, end] = filter.last_updated_onRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
last_updated_on: {
|
||||
...where.last_updated_on,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
last_updated_on: {
|
||||
...where.last_updated_on,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
if (filter.active !== undefined) {
|
||||
where = {
|
||||
...where,
|
||||
active: filter.active === true || filter.active === 'true'
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
if (filter.createdAtRange) {
|
||||
const [start, end] = filter.createdAtRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
['createdAt']: {
|
||||
...where.createdAt,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
['createdAt']: {
|
||||
...where.createdAt,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
const queryOptions = {
|
||||
where,
|
||||
include,
|
||||
distinct: true,
|
||||
order: filter.field && filter.sort
|
||||
? [[filter.field, filter.sort]]
|
||||
: [['createdAt', 'desc']],
|
||||
transaction: options?.transaction,
|
||||
logging: console.log
|
||||
};
|
||||
|
||||
if (!options?.countOnly) {
|
||||
queryOptions.limit = limit ? Number(limit) : undefined;
|
||||
queryOptions.offset = offset ? Number(offset) : undefined;
|
||||
}
|
||||
|
||||
try {
|
||||
const { rows, count } = await db.patient_dossiers.findAndCountAll(queryOptions);
|
||||
|
||||
return {
|
||||
rows: options?.countOnly ? [] : rows,
|
||||
count: count
|
||||
};
|
||||
} catch (error) {
|
||||
console.error('Error executing query:', error);
|
||||
throw error;
|
||||
}
|
||||
}
|
||||
|
||||
static async findAllAutocomplete(query, limit, offset, ) {
|
||||
let where = {};
|
||||
|
||||
|
||||
|
||||
if (query) {
|
||||
where = {
|
||||
[Op.or]: [
|
||||
{ ['id']: Utils.uuid(query) },
|
||||
Utils.ilike(
|
||||
'patient_dossiers',
|
||||
'chief_complaint',
|
||||
query,
|
||||
),
|
||||
],
|
||||
};
|
||||
}
|
||||
|
||||
const records = await db.patient_dossiers.findAll({
|
||||
attributes: [ 'id', 'chief_complaint' ],
|
||||
where,
|
||||
limit: limit ? Number(limit) : undefined,
|
||||
offset: offset ? Number(offset) : undefined,
|
||||
orderBy: [['chief_complaint', 'ASC']],
|
||||
});
|
||||
|
||||
return records.map((record) => ({
|
||||
id: record.id,
|
||||
label: record.chief_complaint,
|
||||
}));
|
||||
}
|
||||
|
||||
|
||||
};
|
||||
|
||||
721
backend/src/db/api/patients.js
Normal file
721
backend/src/db/api/patients.js
Normal file
@ -0,0 +1,721 @@
|
||||
|
||||
const db = require('../models');
|
||||
const FileDBApi = require('./file');
|
||||
const crypto = require('crypto');
|
||||
const Utils = require('../utils');
|
||||
|
||||
|
||||
|
||||
const Sequelize = db.Sequelize;
|
||||
const Op = Sequelize.Op;
|
||||
|
||||
module.exports = class PatientsDBApi {
|
||||
|
||||
|
||||
|
||||
static async create(data, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const patients = await db.patients.create(
|
||||
{
|
||||
id: data.id || undefined,
|
||||
|
||||
medical_record_number: data.medical_record_number
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
national_id: data.national_id
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
full_name: data.full_name
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
date_of_birth: data.date_of_birth
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
sex: data.sex
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
phone: data.phone
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
address: data.address
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
emergency_contact_name: data.emergency_contact_name
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
emergency_contact_phone: data.emergency_contact_phone
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
status: data.status
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
registration_date: data.registration_date
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
importHash: data.importHash || null,
|
||||
createdById: currentUser.id,
|
||||
updatedById: currentUser.id,
|
||||
},
|
||||
{ transaction },
|
||||
);
|
||||
|
||||
|
||||
await patients.setDepartment( data.department || null, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
await FileDBApi.replaceRelationFiles(
|
||||
{
|
||||
belongsTo: db.patients.getTableName(),
|
||||
belongsToColumn: 'photo',
|
||||
belongsToId: patients.id,
|
||||
},
|
||||
data.photo,
|
||||
options,
|
||||
);
|
||||
|
||||
|
||||
return patients;
|
||||
}
|
||||
|
||||
|
||||
static async bulkImport(data, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
// Prepare data - wrapping individual data transformations in a map() method
|
||||
const patientsData = data.map((item, index) => ({
|
||||
id: item.id || undefined,
|
||||
|
||||
medical_record_number: item.medical_record_number
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
national_id: item.national_id
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
full_name: item.full_name
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
date_of_birth: item.date_of_birth
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
sex: item.sex
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
phone: item.phone
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
address: item.address
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
emergency_contact_name: item.emergency_contact_name
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
emergency_contact_phone: item.emergency_contact_phone
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
status: item.status
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
registration_date: item.registration_date
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
importHash: item.importHash || null,
|
||||
createdById: currentUser.id,
|
||||
updatedById: currentUser.id,
|
||||
createdAt: new Date(Date.now() + index * 1000),
|
||||
}));
|
||||
|
||||
// Bulk create items
|
||||
const patients = await db.patients.bulkCreate(patientsData, { transaction });
|
||||
|
||||
// For each item created, replace relation files
|
||||
|
||||
for (let i = 0; i < patients.length; i++) {
|
||||
await FileDBApi.replaceRelationFiles(
|
||||
{
|
||||
belongsTo: db.patients.getTableName(),
|
||||
belongsToColumn: 'photo',
|
||||
belongsToId: patients[i].id,
|
||||
},
|
||||
data[i].photo,
|
||||
options,
|
||||
);
|
||||
}
|
||||
|
||||
|
||||
return patients;
|
||||
}
|
||||
|
||||
static async update(id, data, options) {
|
||||
const currentUser = (options && options.currentUser) || {id: null};
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
|
||||
const patients = await db.patients.findByPk(id, {}, {transaction});
|
||||
|
||||
|
||||
|
||||
|
||||
const updatePayload = {};
|
||||
|
||||
if (data.medical_record_number !== undefined) updatePayload.medical_record_number = data.medical_record_number;
|
||||
|
||||
|
||||
if (data.national_id !== undefined) updatePayload.national_id = data.national_id;
|
||||
|
||||
|
||||
if (data.full_name !== undefined) updatePayload.full_name = data.full_name;
|
||||
|
||||
|
||||
if (data.date_of_birth !== undefined) updatePayload.date_of_birth = data.date_of_birth;
|
||||
|
||||
|
||||
if (data.sex !== undefined) updatePayload.sex = data.sex;
|
||||
|
||||
|
||||
if (data.phone !== undefined) updatePayload.phone = data.phone;
|
||||
|
||||
|
||||
if (data.address !== undefined) updatePayload.address = data.address;
|
||||
|
||||
|
||||
if (data.emergency_contact_name !== undefined) updatePayload.emergency_contact_name = data.emergency_contact_name;
|
||||
|
||||
|
||||
if (data.emergency_contact_phone !== undefined) updatePayload.emergency_contact_phone = data.emergency_contact_phone;
|
||||
|
||||
|
||||
if (data.status !== undefined) updatePayload.status = data.status;
|
||||
|
||||
|
||||
if (data.registration_date !== undefined) updatePayload.registration_date = data.registration_date;
|
||||
|
||||
|
||||
updatePayload.updatedById = currentUser.id;
|
||||
|
||||
await patients.update(updatePayload, {transaction});
|
||||
|
||||
|
||||
|
||||
if (data.department !== undefined) {
|
||||
await patients.setDepartment(
|
||||
|
||||
data.department,
|
||||
|
||||
{ transaction }
|
||||
);
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
await FileDBApi.replaceRelationFiles(
|
||||
{
|
||||
belongsTo: db.patients.getTableName(),
|
||||
belongsToColumn: 'photo',
|
||||
belongsToId: patients.id,
|
||||
},
|
||||
data.photo,
|
||||
options,
|
||||
);
|
||||
|
||||
|
||||
return patients;
|
||||
}
|
||||
|
||||
static async deleteByIds(ids, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const patients = await db.patients.findAll({
|
||||
where: {
|
||||
id: {
|
||||
[Op.in]: ids,
|
||||
},
|
||||
},
|
||||
transaction,
|
||||
});
|
||||
|
||||
await db.sequelize.transaction(async (transaction) => {
|
||||
for (const record of patients) {
|
||||
await record.update(
|
||||
{deletedBy: currentUser.id},
|
||||
{transaction}
|
||||
);
|
||||
}
|
||||
for (const record of patients) {
|
||||
await record.destroy({transaction});
|
||||
}
|
||||
});
|
||||
|
||||
|
||||
return patients;
|
||||
}
|
||||
|
||||
static async remove(id, options) {
|
||||
const currentUser = (options && options.currentUser) || {id: null};
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const patients = await db.patients.findByPk(id, options);
|
||||
|
||||
await patients.update({
|
||||
deletedBy: currentUser.id
|
||||
}, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
await patients.destroy({
|
||||
transaction
|
||||
});
|
||||
|
||||
return patients;
|
||||
}
|
||||
|
||||
static async findBy(where, options) {
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const patients = await db.patients.findOne(
|
||||
{ where },
|
||||
{ transaction },
|
||||
);
|
||||
|
||||
if (!patients) {
|
||||
return patients;
|
||||
}
|
||||
|
||||
const output = patients.get({plain: true});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
output.patient_dossiers_patient = await patients.getPatient_dossiers_patient({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
output.tumor_cases_patient = await patients.getTumor_cases_patient({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
output.appointments_patient = await patients.getAppointments_patient({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
output.clinical_visits_patient = await patients.getClinical_visits_patient({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
output.lab_orders_patient = await patients.getLab_orders_patient({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
output.imaging_orders_patient = await patients.getImaging_orders_patient({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
|
||||
output.adverse_events_patient = await patients.getAdverse_events_patient({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
output.medication_administrations_patient = await patients.getMedication_administrations_patient({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
output.task_notes_patient = await patients.getTask_notes_patient({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
|
||||
output.department = await patients.getDepartment({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
output.photo = await patients.getPhoto({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
|
||||
return output;
|
||||
}
|
||||
|
||||
static async findAll(
|
||||
filter,
|
||||
options
|
||||
) {
|
||||
const limit = filter.limit || 0;
|
||||
let offset = 0;
|
||||
let where = {};
|
||||
const currentPage = +filter.page;
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
offset = currentPage * limit;
|
||||
|
||||
const orderBy = null;
|
||||
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
let include = [
|
||||
|
||||
{
|
||||
model: db.departments,
|
||||
as: 'department',
|
||||
|
||||
where: filter.department ? {
|
||||
[Op.or]: [
|
||||
{ id: { [Op.in]: filter.department.split('|').map(term => Utils.uuid(term)) } },
|
||||
{
|
||||
name: {
|
||||
[Op.or]: filter.department.split('|').map(term => ({ [Op.iLike]: `%${term}%` }))
|
||||
}
|
||||
},
|
||||
]
|
||||
} : {},
|
||||
|
||||
},
|
||||
|
||||
|
||||
|
||||
{
|
||||
model: db.file,
|
||||
as: 'photo',
|
||||
},
|
||||
|
||||
];
|
||||
|
||||
if (filter) {
|
||||
if (filter.id) {
|
||||
where = {
|
||||
...where,
|
||||
['id']: Utils.uuid(filter.id),
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
if (filter.medical_record_number) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'patients',
|
||||
'medical_record_number',
|
||||
filter.medical_record_number,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.national_id) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'patients',
|
||||
'national_id',
|
||||
filter.national_id,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.full_name) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'patients',
|
||||
'full_name',
|
||||
filter.full_name,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.phone) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'patients',
|
||||
'phone',
|
||||
filter.phone,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.address) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'patients',
|
||||
'address',
|
||||
filter.address,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.emergency_contact_name) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'patients',
|
||||
'emergency_contact_name',
|
||||
filter.emergency_contact_name,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.emergency_contact_phone) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'patients',
|
||||
'emergency_contact_phone',
|
||||
filter.emergency_contact_phone,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
if (filter.date_of_birthRange) {
|
||||
const [start, end] = filter.date_of_birthRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
date_of_birth: {
|
||||
...where.date_of_birth,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
date_of_birth: {
|
||||
...where.date_of_birth,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
|
||||
if (filter.registration_dateRange) {
|
||||
const [start, end] = filter.registration_dateRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
registration_date: {
|
||||
...where.registration_date,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
registration_date: {
|
||||
...where.registration_date,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
if (filter.active !== undefined) {
|
||||
where = {
|
||||
...where,
|
||||
active: filter.active === true || filter.active === 'true'
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
if (filter.sex) {
|
||||
where = {
|
||||
...where,
|
||||
sex: filter.sex,
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.status) {
|
||||
where = {
|
||||
...where,
|
||||
status: filter.status,
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
if (filter.createdAtRange) {
|
||||
const [start, end] = filter.createdAtRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
['createdAt']: {
|
||||
...where.createdAt,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
['createdAt']: {
|
||||
...where.createdAt,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
const queryOptions = {
|
||||
where,
|
||||
include,
|
||||
distinct: true,
|
||||
order: filter.field && filter.sort
|
||||
? [[filter.field, filter.sort]]
|
||||
: [['createdAt', 'desc']],
|
||||
transaction: options?.transaction,
|
||||
logging: console.log
|
||||
};
|
||||
|
||||
if (!options?.countOnly) {
|
||||
queryOptions.limit = limit ? Number(limit) : undefined;
|
||||
queryOptions.offset = offset ? Number(offset) : undefined;
|
||||
}
|
||||
|
||||
try {
|
||||
const { rows, count } = await db.patients.findAndCountAll(queryOptions);
|
||||
|
||||
return {
|
||||
rows: options?.countOnly ? [] : rows,
|
||||
count: count
|
||||
};
|
||||
} catch (error) {
|
||||
console.error('Error executing query:', error);
|
||||
throw error;
|
||||
}
|
||||
}
|
||||
|
||||
static async findAllAutocomplete(query, limit, offset, ) {
|
||||
let where = {};
|
||||
|
||||
|
||||
|
||||
if (query) {
|
||||
where = {
|
||||
[Op.or]: [
|
||||
{ ['id']: Utils.uuid(query) },
|
||||
Utils.ilike(
|
||||
'patients',
|
||||
'full_name',
|
||||
query,
|
||||
),
|
||||
],
|
||||
};
|
||||
}
|
||||
|
||||
const records = await db.patients.findAll({
|
||||
attributes: [ 'id', 'full_name' ],
|
||||
where,
|
||||
limit: limit ? Number(limit) : undefined,
|
||||
offset: offset ? Number(offset) : undefined,
|
||||
orderBy: [['full_name', 'ASC']],
|
||||
});
|
||||
|
||||
return records.map((record) => ({
|
||||
id: record.id,
|
||||
label: record.full_name,
|
||||
}));
|
||||
}
|
||||
|
||||
|
||||
};
|
||||
|
||||
348
backend/src/db/api/permissions.js
Normal file
348
backend/src/db/api/permissions.js
Normal file
@ -0,0 +1,348 @@
|
||||
|
||||
const db = require('../models');
|
||||
const FileDBApi = require('./file');
|
||||
const crypto = require('crypto');
|
||||
const Utils = require('../utils');
|
||||
|
||||
|
||||
|
||||
const Sequelize = db.Sequelize;
|
||||
const Op = Sequelize.Op;
|
||||
|
||||
module.exports = class PermissionsDBApi {
|
||||
|
||||
|
||||
|
||||
static async create(data, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const permissions = await db.permissions.create(
|
||||
{
|
||||
id: data.id || undefined,
|
||||
|
||||
name: data.name
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
importHash: data.importHash || null,
|
||||
createdById: currentUser.id,
|
||||
updatedById: currentUser.id,
|
||||
},
|
||||
{ transaction },
|
||||
);
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
return permissions;
|
||||
}
|
||||
|
||||
|
||||
static async bulkImport(data, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
// Prepare data - wrapping individual data transformations in a map() method
|
||||
const permissionsData = data.map((item, index) => ({
|
||||
id: item.id || undefined,
|
||||
|
||||
name: item.name
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
importHash: item.importHash || null,
|
||||
createdById: currentUser.id,
|
||||
updatedById: currentUser.id,
|
||||
createdAt: new Date(Date.now() + index * 1000),
|
||||
}));
|
||||
|
||||
// Bulk create items
|
||||
const permissions = await db.permissions.bulkCreate(permissionsData, { transaction });
|
||||
|
||||
// For each item created, replace relation files
|
||||
|
||||
|
||||
return permissions;
|
||||
}
|
||||
|
||||
static async update(id, data, options) {
|
||||
const currentUser = (options && options.currentUser) || {id: null};
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
|
||||
const permissions = await db.permissions.findByPk(id, {}, {transaction});
|
||||
|
||||
|
||||
|
||||
|
||||
const updatePayload = {};
|
||||
|
||||
if (data.name !== undefined) updatePayload.name = data.name;
|
||||
|
||||
|
||||
updatePayload.updatedById = currentUser.id;
|
||||
|
||||
await permissions.update(updatePayload, {transaction});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
return permissions;
|
||||
}
|
||||
|
||||
static async deleteByIds(ids, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const permissions = await db.permissions.findAll({
|
||||
where: {
|
||||
id: {
|
||||
[Op.in]: ids,
|
||||
},
|
||||
},
|
||||
transaction,
|
||||
});
|
||||
|
||||
await db.sequelize.transaction(async (transaction) => {
|
||||
for (const record of permissions) {
|
||||
await record.update(
|
||||
{deletedBy: currentUser.id},
|
||||
{transaction}
|
||||
);
|
||||
}
|
||||
for (const record of permissions) {
|
||||
await record.destroy({transaction});
|
||||
}
|
||||
});
|
||||
|
||||
|
||||
return permissions;
|
||||
}
|
||||
|
||||
static async remove(id, options) {
|
||||
const currentUser = (options && options.currentUser) || {id: null};
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const permissions = await db.permissions.findByPk(id, options);
|
||||
|
||||
await permissions.update({
|
||||
deletedBy: currentUser.id
|
||||
}, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
await permissions.destroy({
|
||||
transaction
|
||||
});
|
||||
|
||||
return permissions;
|
||||
}
|
||||
|
||||
static async findBy(where, options) {
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const permissions = await db.permissions.findOne(
|
||||
{ where },
|
||||
{ transaction },
|
||||
);
|
||||
|
||||
if (!permissions) {
|
||||
return permissions;
|
||||
}
|
||||
|
||||
const output = permissions.get({plain: true});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
return output;
|
||||
}
|
||||
|
||||
static async findAll(
|
||||
filter,
|
||||
options
|
||||
) {
|
||||
const limit = filter.limit || 0;
|
||||
let offset = 0;
|
||||
let where = {};
|
||||
const currentPage = +filter.page;
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
offset = currentPage * limit;
|
||||
|
||||
const orderBy = null;
|
||||
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
let include = [
|
||||
|
||||
|
||||
|
||||
];
|
||||
|
||||
if (filter) {
|
||||
if (filter.id) {
|
||||
where = {
|
||||
...where,
|
||||
['id']: Utils.uuid(filter.id),
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
if (filter.name) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'permissions',
|
||||
'name',
|
||||
filter.name,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
if (filter.active !== undefined) {
|
||||
where = {
|
||||
...where,
|
||||
active: filter.active === true || filter.active === 'true'
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
if (filter.createdAtRange) {
|
||||
const [start, end] = filter.createdAtRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
['createdAt']: {
|
||||
...where.createdAt,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
['createdAt']: {
|
||||
...where.createdAt,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
const queryOptions = {
|
||||
where,
|
||||
include,
|
||||
distinct: true,
|
||||
order: filter.field && filter.sort
|
||||
? [[filter.field, filter.sort]]
|
||||
: [['createdAt', 'desc']],
|
||||
transaction: options?.transaction,
|
||||
logging: console.log
|
||||
};
|
||||
|
||||
if (!options?.countOnly) {
|
||||
queryOptions.limit = limit ? Number(limit) : undefined;
|
||||
queryOptions.offset = offset ? Number(offset) : undefined;
|
||||
}
|
||||
|
||||
try {
|
||||
const { rows, count } = await db.permissions.findAndCountAll(queryOptions);
|
||||
|
||||
return {
|
||||
rows: options?.countOnly ? [] : rows,
|
||||
count: count
|
||||
};
|
||||
} catch (error) {
|
||||
console.error('Error executing query:', error);
|
||||
throw error;
|
||||
}
|
||||
}
|
||||
|
||||
static async findAllAutocomplete(query, limit, offset, ) {
|
||||
let where = {};
|
||||
|
||||
|
||||
|
||||
if (query) {
|
||||
where = {
|
||||
[Op.or]: [
|
||||
{ ['id']: Utils.uuid(query) },
|
||||
Utils.ilike(
|
||||
'permissions',
|
||||
'name',
|
||||
query,
|
||||
),
|
||||
],
|
||||
};
|
||||
}
|
||||
|
||||
const records = await db.permissions.findAll({
|
||||
attributes: [ 'id', 'name' ],
|
||||
where,
|
||||
limit: limit ? Number(limit) : undefined,
|
||||
offset: offset ? Number(offset) : undefined,
|
||||
orderBy: [['name', 'ASC']],
|
||||
});
|
||||
|
||||
return records.map((record) => ({
|
||||
id: record.id,
|
||||
label: record.name,
|
||||
}));
|
||||
}
|
||||
|
||||
|
||||
};
|
||||
|
||||
590
backend/src/db/api/radiotherapy_fractions.js
Normal file
590
backend/src/db/api/radiotherapy_fractions.js
Normal file
@ -0,0 +1,590 @@
|
||||
|
||||
const db = require('../models');
|
||||
const FileDBApi = require('./file');
|
||||
const crypto = require('crypto');
|
||||
const Utils = require('../utils');
|
||||
|
||||
|
||||
|
||||
const Sequelize = db.Sequelize;
|
||||
const Op = Sequelize.Op;
|
||||
|
||||
module.exports = class Radiotherapy_fractionsDBApi {
|
||||
|
||||
|
||||
|
||||
static async create(data, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const radiotherapy_fractions = await db.radiotherapy_fractions.create(
|
||||
{
|
||||
id: data.id || undefined,
|
||||
|
||||
fraction_number: data.fraction_number
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
scheduled_datetime: data.scheduled_datetime
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
delivered_datetime: data.delivered_datetime
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
delivered_dose_gy: data.delivered_dose_gy
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
status: data.status
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
notes: data.notes
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
importHash: data.importHash || null,
|
||||
createdById: currentUser.id,
|
||||
updatedById: currentUser.id,
|
||||
},
|
||||
{ transaction },
|
||||
);
|
||||
|
||||
|
||||
await radiotherapy_fractions.setRadiotherapy_plan( data.radiotherapy_plan || null, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
await radiotherapy_fractions.setTherapist_user( data.therapist_user || null, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
return radiotherapy_fractions;
|
||||
}
|
||||
|
||||
|
||||
static async bulkImport(data, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
// Prepare data - wrapping individual data transformations in a map() method
|
||||
const radiotherapy_fractionsData = data.map((item, index) => ({
|
||||
id: item.id || undefined,
|
||||
|
||||
fraction_number: item.fraction_number
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
scheduled_datetime: item.scheduled_datetime
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
delivered_datetime: item.delivered_datetime
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
delivered_dose_gy: item.delivered_dose_gy
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
status: item.status
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
notes: item.notes
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
importHash: item.importHash || null,
|
||||
createdById: currentUser.id,
|
||||
updatedById: currentUser.id,
|
||||
createdAt: new Date(Date.now() + index * 1000),
|
||||
}));
|
||||
|
||||
// Bulk create items
|
||||
const radiotherapy_fractions = await db.radiotherapy_fractions.bulkCreate(radiotherapy_fractionsData, { transaction });
|
||||
|
||||
// For each item created, replace relation files
|
||||
|
||||
|
||||
return radiotherapy_fractions;
|
||||
}
|
||||
|
||||
static async update(id, data, options) {
|
||||
const currentUser = (options && options.currentUser) || {id: null};
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
|
||||
const radiotherapy_fractions = await db.radiotherapy_fractions.findByPk(id, {}, {transaction});
|
||||
|
||||
|
||||
|
||||
|
||||
const updatePayload = {};
|
||||
|
||||
if (data.fraction_number !== undefined) updatePayload.fraction_number = data.fraction_number;
|
||||
|
||||
|
||||
if (data.scheduled_datetime !== undefined) updatePayload.scheduled_datetime = data.scheduled_datetime;
|
||||
|
||||
|
||||
if (data.delivered_datetime !== undefined) updatePayload.delivered_datetime = data.delivered_datetime;
|
||||
|
||||
|
||||
if (data.delivered_dose_gy !== undefined) updatePayload.delivered_dose_gy = data.delivered_dose_gy;
|
||||
|
||||
|
||||
if (data.status !== undefined) updatePayload.status = data.status;
|
||||
|
||||
|
||||
if (data.notes !== undefined) updatePayload.notes = data.notes;
|
||||
|
||||
|
||||
updatePayload.updatedById = currentUser.id;
|
||||
|
||||
await radiotherapy_fractions.update(updatePayload, {transaction});
|
||||
|
||||
|
||||
|
||||
if (data.radiotherapy_plan !== undefined) {
|
||||
await radiotherapy_fractions.setRadiotherapy_plan(
|
||||
|
||||
data.radiotherapy_plan,
|
||||
|
||||
{ transaction }
|
||||
);
|
||||
}
|
||||
|
||||
if (data.therapist_user !== undefined) {
|
||||
await radiotherapy_fractions.setTherapist_user(
|
||||
|
||||
data.therapist_user,
|
||||
|
||||
{ transaction }
|
||||
);
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
return radiotherapy_fractions;
|
||||
}
|
||||
|
||||
static async deleteByIds(ids, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const radiotherapy_fractions = await db.radiotherapy_fractions.findAll({
|
||||
where: {
|
||||
id: {
|
||||
[Op.in]: ids,
|
||||
},
|
||||
},
|
||||
transaction,
|
||||
});
|
||||
|
||||
await db.sequelize.transaction(async (transaction) => {
|
||||
for (const record of radiotherapy_fractions) {
|
||||
await record.update(
|
||||
{deletedBy: currentUser.id},
|
||||
{transaction}
|
||||
);
|
||||
}
|
||||
for (const record of radiotherapy_fractions) {
|
||||
await record.destroy({transaction});
|
||||
}
|
||||
});
|
||||
|
||||
|
||||
return radiotherapy_fractions;
|
||||
}
|
||||
|
||||
static async remove(id, options) {
|
||||
const currentUser = (options && options.currentUser) || {id: null};
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const radiotherapy_fractions = await db.radiotherapy_fractions.findByPk(id, options);
|
||||
|
||||
await radiotherapy_fractions.update({
|
||||
deletedBy: currentUser.id
|
||||
}, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
await radiotherapy_fractions.destroy({
|
||||
transaction
|
||||
});
|
||||
|
||||
return radiotherapy_fractions;
|
||||
}
|
||||
|
||||
static async findBy(where, options) {
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const radiotherapy_fractions = await db.radiotherapy_fractions.findOne(
|
||||
{ where },
|
||||
{ transaction },
|
||||
);
|
||||
|
||||
if (!radiotherapy_fractions) {
|
||||
return radiotherapy_fractions;
|
||||
}
|
||||
|
||||
const output = radiotherapy_fractions.get({plain: true});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
output.radiotherapy_plan = await radiotherapy_fractions.getRadiotherapy_plan({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
output.therapist_user = await radiotherapy_fractions.getTherapist_user({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
|
||||
return output;
|
||||
}
|
||||
|
||||
static async findAll(
|
||||
filter,
|
||||
options
|
||||
) {
|
||||
const limit = filter.limit || 0;
|
||||
let offset = 0;
|
||||
let where = {};
|
||||
const currentPage = +filter.page;
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
offset = currentPage * limit;
|
||||
|
||||
const orderBy = null;
|
||||
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
let include = [
|
||||
|
||||
{
|
||||
model: db.radiotherapy_plans,
|
||||
as: 'radiotherapy_plan',
|
||||
|
||||
where: filter.radiotherapy_plan ? {
|
||||
[Op.or]: [
|
||||
{ id: { [Op.in]: filter.radiotherapy_plan.split('|').map(term => Utils.uuid(term)) } },
|
||||
{
|
||||
plan_name: {
|
||||
[Op.or]: filter.radiotherapy_plan.split('|').map(term => ({ [Op.iLike]: `%${term}%` }))
|
||||
}
|
||||
},
|
||||
]
|
||||
} : {},
|
||||
|
||||
},
|
||||
|
||||
{
|
||||
model: db.users,
|
||||
as: 'therapist_user',
|
||||
|
||||
where: filter.therapist_user ? {
|
||||
[Op.or]: [
|
||||
{ id: { [Op.in]: filter.therapist_user.split('|').map(term => Utils.uuid(term)) } },
|
||||
{
|
||||
firstName: {
|
||||
[Op.or]: filter.therapist_user.split('|').map(term => ({ [Op.iLike]: `%${term}%` }))
|
||||
}
|
||||
},
|
||||
]
|
||||
} : {},
|
||||
|
||||
},
|
||||
|
||||
|
||||
|
||||
];
|
||||
|
||||
if (filter) {
|
||||
if (filter.id) {
|
||||
where = {
|
||||
...where,
|
||||
['id']: Utils.uuid(filter.id),
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
if (filter.notes) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'radiotherapy_fractions',
|
||||
'notes',
|
||||
filter.notes,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
if (filter.fraction_numberRange) {
|
||||
const [start, end] = filter.fraction_numberRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
fraction_number: {
|
||||
...where.fraction_number,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
fraction_number: {
|
||||
...where.fraction_number,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
|
||||
if (filter.scheduled_datetimeRange) {
|
||||
const [start, end] = filter.scheduled_datetimeRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
scheduled_datetime: {
|
||||
...where.scheduled_datetime,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
scheduled_datetime: {
|
||||
...where.scheduled_datetime,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
|
||||
if (filter.delivered_datetimeRange) {
|
||||
const [start, end] = filter.delivered_datetimeRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
delivered_datetime: {
|
||||
...where.delivered_datetime,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
delivered_datetime: {
|
||||
...where.delivered_datetime,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
|
||||
if (filter.delivered_dose_gyRange) {
|
||||
const [start, end] = filter.delivered_dose_gyRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
delivered_dose_gy: {
|
||||
...where.delivered_dose_gy,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
delivered_dose_gy: {
|
||||
...where.delivered_dose_gy,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
if (filter.active !== undefined) {
|
||||
where = {
|
||||
...where,
|
||||
active: filter.active === true || filter.active === 'true'
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
if (filter.status) {
|
||||
where = {
|
||||
...where,
|
||||
status: filter.status,
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
if (filter.createdAtRange) {
|
||||
const [start, end] = filter.createdAtRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
['createdAt']: {
|
||||
...where.createdAt,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
['createdAt']: {
|
||||
...where.createdAt,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
const queryOptions = {
|
||||
where,
|
||||
include,
|
||||
distinct: true,
|
||||
order: filter.field && filter.sort
|
||||
? [[filter.field, filter.sort]]
|
||||
: [['createdAt', 'desc']],
|
||||
transaction: options?.transaction,
|
||||
logging: console.log
|
||||
};
|
||||
|
||||
if (!options?.countOnly) {
|
||||
queryOptions.limit = limit ? Number(limit) : undefined;
|
||||
queryOptions.offset = offset ? Number(offset) : undefined;
|
||||
}
|
||||
|
||||
try {
|
||||
const { rows, count } = await db.radiotherapy_fractions.findAndCountAll(queryOptions);
|
||||
|
||||
return {
|
||||
rows: options?.countOnly ? [] : rows,
|
||||
count: count
|
||||
};
|
||||
} catch (error) {
|
||||
console.error('Error executing query:', error);
|
||||
throw error;
|
||||
}
|
||||
}
|
||||
|
||||
static async findAllAutocomplete(query, limit, offset, ) {
|
||||
let where = {};
|
||||
|
||||
|
||||
|
||||
if (query) {
|
||||
where = {
|
||||
[Op.or]: [
|
||||
{ ['id']: Utils.uuid(query) },
|
||||
Utils.ilike(
|
||||
'radiotherapy_fractions',
|
||||
'notes',
|
||||
query,
|
||||
),
|
||||
],
|
||||
};
|
||||
}
|
||||
|
||||
const records = await db.radiotherapy_fractions.findAll({
|
||||
attributes: [ 'id', 'notes' ],
|
||||
where,
|
||||
limit: limit ? Number(limit) : undefined,
|
||||
offset: offset ? Number(offset) : undefined,
|
||||
orderBy: [['notes', 'ASC']],
|
||||
});
|
||||
|
||||
return records.map((record) => ({
|
||||
id: record.id,
|
||||
label: record.notes,
|
||||
}));
|
||||
}
|
||||
|
||||
|
||||
};
|
||||
|
||||
730
backend/src/db/api/radiotherapy_plans.js
Normal file
730
backend/src/db/api/radiotherapy_plans.js
Normal file
@ -0,0 +1,730 @@
|
||||
|
||||
const db = require('../models');
|
||||
const FileDBApi = require('./file');
|
||||
const crypto = require('crypto');
|
||||
const Utils = require('../utils');
|
||||
|
||||
|
||||
|
||||
const Sequelize = db.Sequelize;
|
||||
const Op = Sequelize.Op;
|
||||
|
||||
module.exports = class Radiotherapy_plansDBApi {
|
||||
|
||||
|
||||
|
||||
static async create(data, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const radiotherapy_plans = await db.radiotherapy_plans.create(
|
||||
{
|
||||
id: data.id || undefined,
|
||||
|
||||
plan_name: data.plan_name
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
site: data.site
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
total_dose_gy: data.total_dose_gy
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
fractions_planned: data.fractions_planned
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
dose_per_fraction_gy: data.dose_per_fraction_gy
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
planning_ct_date: data.planning_ct_date
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
start_date: data.start_date
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
end_date: data.end_date
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
technique: data.technique
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
status: data.status
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
importHash: data.importHash || null,
|
||||
createdById: currentUser.id,
|
||||
updatedById: currentUser.id,
|
||||
},
|
||||
{ transaction },
|
||||
);
|
||||
|
||||
|
||||
await radiotherapy_plans.setProtocol( data.protocol || null, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
await radiotherapy_plans.setRadiation_oncologist( data.radiation_oncologist || null, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
return radiotherapy_plans;
|
||||
}
|
||||
|
||||
|
||||
static async bulkImport(data, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
// Prepare data - wrapping individual data transformations in a map() method
|
||||
const radiotherapy_plansData = data.map((item, index) => ({
|
||||
id: item.id || undefined,
|
||||
|
||||
plan_name: item.plan_name
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
site: item.site
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
total_dose_gy: item.total_dose_gy
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
fractions_planned: item.fractions_planned
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
dose_per_fraction_gy: item.dose_per_fraction_gy
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
planning_ct_date: item.planning_ct_date
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
start_date: item.start_date
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
end_date: item.end_date
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
technique: item.technique
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
status: item.status
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
importHash: item.importHash || null,
|
||||
createdById: currentUser.id,
|
||||
updatedById: currentUser.id,
|
||||
createdAt: new Date(Date.now() + index * 1000),
|
||||
}));
|
||||
|
||||
// Bulk create items
|
||||
const radiotherapy_plans = await db.radiotherapy_plans.bulkCreate(radiotherapy_plansData, { transaction });
|
||||
|
||||
// For each item created, replace relation files
|
||||
|
||||
|
||||
return radiotherapy_plans;
|
||||
}
|
||||
|
||||
static async update(id, data, options) {
|
||||
const currentUser = (options && options.currentUser) || {id: null};
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
|
||||
const radiotherapy_plans = await db.radiotherapy_plans.findByPk(id, {}, {transaction});
|
||||
|
||||
|
||||
|
||||
|
||||
const updatePayload = {};
|
||||
|
||||
if (data.plan_name !== undefined) updatePayload.plan_name = data.plan_name;
|
||||
|
||||
|
||||
if (data.site !== undefined) updatePayload.site = data.site;
|
||||
|
||||
|
||||
if (data.total_dose_gy !== undefined) updatePayload.total_dose_gy = data.total_dose_gy;
|
||||
|
||||
|
||||
if (data.fractions_planned !== undefined) updatePayload.fractions_planned = data.fractions_planned;
|
||||
|
||||
|
||||
if (data.dose_per_fraction_gy !== undefined) updatePayload.dose_per_fraction_gy = data.dose_per_fraction_gy;
|
||||
|
||||
|
||||
if (data.planning_ct_date !== undefined) updatePayload.planning_ct_date = data.planning_ct_date;
|
||||
|
||||
|
||||
if (data.start_date !== undefined) updatePayload.start_date = data.start_date;
|
||||
|
||||
|
||||
if (data.end_date !== undefined) updatePayload.end_date = data.end_date;
|
||||
|
||||
|
||||
if (data.technique !== undefined) updatePayload.technique = data.technique;
|
||||
|
||||
|
||||
if (data.status !== undefined) updatePayload.status = data.status;
|
||||
|
||||
|
||||
updatePayload.updatedById = currentUser.id;
|
||||
|
||||
await radiotherapy_plans.update(updatePayload, {transaction});
|
||||
|
||||
|
||||
|
||||
if (data.protocol !== undefined) {
|
||||
await radiotherapy_plans.setProtocol(
|
||||
|
||||
data.protocol,
|
||||
|
||||
{ transaction }
|
||||
);
|
||||
}
|
||||
|
||||
if (data.radiation_oncologist !== undefined) {
|
||||
await radiotherapy_plans.setRadiation_oncologist(
|
||||
|
||||
data.radiation_oncologist,
|
||||
|
||||
{ transaction }
|
||||
);
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
return radiotherapy_plans;
|
||||
}
|
||||
|
||||
static async deleteByIds(ids, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const radiotherapy_plans = await db.radiotherapy_plans.findAll({
|
||||
where: {
|
||||
id: {
|
||||
[Op.in]: ids,
|
||||
},
|
||||
},
|
||||
transaction,
|
||||
});
|
||||
|
||||
await db.sequelize.transaction(async (transaction) => {
|
||||
for (const record of radiotherapy_plans) {
|
||||
await record.update(
|
||||
{deletedBy: currentUser.id},
|
||||
{transaction}
|
||||
);
|
||||
}
|
||||
for (const record of radiotherapy_plans) {
|
||||
await record.destroy({transaction});
|
||||
}
|
||||
});
|
||||
|
||||
|
||||
return radiotherapy_plans;
|
||||
}
|
||||
|
||||
static async remove(id, options) {
|
||||
const currentUser = (options && options.currentUser) || {id: null};
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const radiotherapy_plans = await db.radiotherapy_plans.findByPk(id, options);
|
||||
|
||||
await radiotherapy_plans.update({
|
||||
deletedBy: currentUser.id
|
||||
}, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
await radiotherapy_plans.destroy({
|
||||
transaction
|
||||
});
|
||||
|
||||
return radiotherapy_plans;
|
||||
}
|
||||
|
||||
static async findBy(where, options) {
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const radiotherapy_plans = await db.radiotherapy_plans.findOne(
|
||||
{ where },
|
||||
{ transaction },
|
||||
);
|
||||
|
||||
if (!radiotherapy_plans) {
|
||||
return radiotherapy_plans;
|
||||
}
|
||||
|
||||
const output = radiotherapy_plans.get({plain: true});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
output.radiotherapy_fractions_radiotherapy_plan = await radiotherapy_plans.getRadiotherapy_fractions_radiotherapy_plan({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
output.protocol = await radiotherapy_plans.getProtocol({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
output.radiation_oncologist = await radiotherapy_plans.getRadiation_oncologist({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
|
||||
return output;
|
||||
}
|
||||
|
||||
static async findAll(
|
||||
filter,
|
||||
options
|
||||
) {
|
||||
const limit = filter.limit || 0;
|
||||
let offset = 0;
|
||||
let where = {};
|
||||
const currentPage = +filter.page;
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
offset = currentPage * limit;
|
||||
|
||||
const orderBy = null;
|
||||
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
let include = [
|
||||
|
||||
{
|
||||
model: db.treatment_protocols,
|
||||
as: 'protocol',
|
||||
|
||||
where: filter.protocol ? {
|
||||
[Op.or]: [
|
||||
{ id: { [Op.in]: filter.protocol.split('|').map(term => Utils.uuid(term)) } },
|
||||
{
|
||||
name: {
|
||||
[Op.or]: filter.protocol.split('|').map(term => ({ [Op.iLike]: `%${term}%` }))
|
||||
}
|
||||
},
|
||||
]
|
||||
} : {},
|
||||
|
||||
},
|
||||
|
||||
{
|
||||
model: db.users,
|
||||
as: 'radiation_oncologist',
|
||||
|
||||
where: filter.radiation_oncologist ? {
|
||||
[Op.or]: [
|
||||
{ id: { [Op.in]: filter.radiation_oncologist.split('|').map(term => Utils.uuid(term)) } },
|
||||
{
|
||||
firstName: {
|
||||
[Op.or]: filter.radiation_oncologist.split('|').map(term => ({ [Op.iLike]: `%${term}%` }))
|
||||
}
|
||||
},
|
||||
]
|
||||
} : {},
|
||||
|
||||
},
|
||||
|
||||
|
||||
|
||||
];
|
||||
|
||||
if (filter) {
|
||||
if (filter.id) {
|
||||
where = {
|
||||
...where,
|
||||
['id']: Utils.uuid(filter.id),
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
if (filter.plan_name) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'radiotherapy_plans',
|
||||
'plan_name',
|
||||
filter.plan_name,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.site) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'radiotherapy_plans',
|
||||
'site',
|
||||
filter.site,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
if (filter.calendarStart && filter.calendarEnd) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.or]: [
|
||||
{
|
||||
start_date: {
|
||||
[Op.between]: [filter.calendarStart, filter.calendarEnd],
|
||||
},
|
||||
},
|
||||
{
|
||||
end_date: {
|
||||
[Op.between]: [filter.calendarStart, filter.calendarEnd],
|
||||
},
|
||||
},
|
||||
],
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
|
||||
if (filter.total_dose_gyRange) {
|
||||
const [start, end] = filter.total_dose_gyRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
total_dose_gy: {
|
||||
...where.total_dose_gy,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
total_dose_gy: {
|
||||
...where.total_dose_gy,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
|
||||
if (filter.fractions_plannedRange) {
|
||||
const [start, end] = filter.fractions_plannedRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
fractions_planned: {
|
||||
...where.fractions_planned,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
fractions_planned: {
|
||||
...where.fractions_planned,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
|
||||
if (filter.dose_per_fraction_gyRange) {
|
||||
const [start, end] = filter.dose_per_fraction_gyRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
dose_per_fraction_gy: {
|
||||
...where.dose_per_fraction_gy,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
dose_per_fraction_gy: {
|
||||
...where.dose_per_fraction_gy,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
|
||||
if (filter.planning_ct_dateRange) {
|
||||
const [start, end] = filter.planning_ct_dateRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
planning_ct_date: {
|
||||
...where.planning_ct_date,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
planning_ct_date: {
|
||||
...where.planning_ct_date,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
|
||||
if (filter.start_dateRange) {
|
||||
const [start, end] = filter.start_dateRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
start_date: {
|
||||
...where.start_date,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
start_date: {
|
||||
...where.start_date,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
|
||||
if (filter.end_dateRange) {
|
||||
const [start, end] = filter.end_dateRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
end_date: {
|
||||
...where.end_date,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
end_date: {
|
||||
...where.end_date,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
if (filter.active !== undefined) {
|
||||
where = {
|
||||
...where,
|
||||
active: filter.active === true || filter.active === 'true'
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
if (filter.technique) {
|
||||
where = {
|
||||
...where,
|
||||
technique: filter.technique,
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.status) {
|
||||
where = {
|
||||
...where,
|
||||
status: filter.status,
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
if (filter.createdAtRange) {
|
||||
const [start, end] = filter.createdAtRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
['createdAt']: {
|
||||
...where.createdAt,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
['createdAt']: {
|
||||
...where.createdAt,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
const queryOptions = {
|
||||
where,
|
||||
include,
|
||||
distinct: true,
|
||||
order: filter.field && filter.sort
|
||||
? [[filter.field, filter.sort]]
|
||||
: [['createdAt', 'desc']],
|
||||
transaction: options?.transaction,
|
||||
logging: console.log
|
||||
};
|
||||
|
||||
if (!options?.countOnly) {
|
||||
queryOptions.limit = limit ? Number(limit) : undefined;
|
||||
queryOptions.offset = offset ? Number(offset) : undefined;
|
||||
}
|
||||
|
||||
try {
|
||||
const { rows, count } = await db.radiotherapy_plans.findAndCountAll(queryOptions);
|
||||
|
||||
return {
|
||||
rows: options?.countOnly ? [] : rows,
|
||||
count: count
|
||||
};
|
||||
} catch (error) {
|
||||
console.error('Error executing query:', error);
|
||||
throw error;
|
||||
}
|
||||
}
|
||||
|
||||
static async findAllAutocomplete(query, limit, offset, ) {
|
||||
let where = {};
|
||||
|
||||
|
||||
|
||||
if (query) {
|
||||
where = {
|
||||
[Op.or]: [
|
||||
{ ['id']: Utils.uuid(query) },
|
||||
Utils.ilike(
|
||||
'radiotherapy_plans',
|
||||
'plan_name',
|
||||
query,
|
||||
),
|
||||
],
|
||||
};
|
||||
}
|
||||
|
||||
const records = await db.radiotherapy_plans.findAll({
|
||||
attributes: [ 'id', 'plan_name' ],
|
||||
where,
|
||||
limit: limit ? Number(limit) : undefined,
|
||||
offset: offset ? Number(offset) : undefined,
|
||||
orderBy: [['plan_name', 'ASC']],
|
||||
});
|
||||
|
||||
return records.map((record) => ({
|
||||
id: record.id,
|
||||
label: record.plan_name,
|
||||
}));
|
||||
}
|
||||
|
||||
|
||||
};
|
||||
|
||||
418
backend/src/db/api/roles.js
Normal file
418
backend/src/db/api/roles.js
Normal file
@ -0,0 +1,418 @@
|
||||
|
||||
const db = require('../models');
|
||||
const FileDBApi = require('./file');
|
||||
const crypto = require('crypto');
|
||||
const Utils = require('../utils');
|
||||
|
||||
|
||||
|
||||
const Sequelize = db.Sequelize;
|
||||
const Op = Sequelize.Op;
|
||||
|
||||
module.exports = class RolesDBApi {
|
||||
|
||||
|
||||
|
||||
static async create(data, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const roles = await db.roles.create(
|
||||
{
|
||||
id: data.id || undefined,
|
||||
|
||||
name: data.name
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
role_customization: data.role_customization
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
importHash: data.importHash || null,
|
||||
createdById: currentUser.id,
|
||||
updatedById: currentUser.id,
|
||||
},
|
||||
{ transaction },
|
||||
);
|
||||
|
||||
|
||||
|
||||
|
||||
await roles.setPermissions(data.permissions || [], {
|
||||
transaction,
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
return roles;
|
||||
}
|
||||
|
||||
|
||||
static async bulkImport(data, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
// Prepare data - wrapping individual data transformations in a map() method
|
||||
const rolesData = data.map((item, index) => ({
|
||||
id: item.id || undefined,
|
||||
|
||||
name: item.name
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
role_customization: item.role_customization
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
importHash: item.importHash || null,
|
||||
createdById: currentUser.id,
|
||||
updatedById: currentUser.id,
|
||||
createdAt: new Date(Date.now() + index * 1000),
|
||||
}));
|
||||
|
||||
// Bulk create items
|
||||
const roles = await db.roles.bulkCreate(rolesData, { transaction });
|
||||
|
||||
// For each item created, replace relation files
|
||||
|
||||
|
||||
return roles;
|
||||
}
|
||||
|
||||
static async update(id, data, options) {
|
||||
const currentUser = (options && options.currentUser) || {id: null};
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
|
||||
const roles = await db.roles.findByPk(id, {}, {transaction});
|
||||
|
||||
|
||||
|
||||
|
||||
const updatePayload = {};
|
||||
|
||||
if (data.name !== undefined) updatePayload.name = data.name;
|
||||
|
||||
|
||||
if (data.role_customization !== undefined) updatePayload.role_customization = data.role_customization;
|
||||
|
||||
|
||||
updatePayload.updatedById = currentUser.id;
|
||||
|
||||
await roles.update(updatePayload, {transaction});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
if (data.permissions !== undefined) {
|
||||
await roles.setPermissions(data.permissions, { transaction });
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
return roles;
|
||||
}
|
||||
|
||||
static async deleteByIds(ids, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const roles = await db.roles.findAll({
|
||||
where: {
|
||||
id: {
|
||||
[Op.in]: ids,
|
||||
},
|
||||
},
|
||||
transaction,
|
||||
});
|
||||
|
||||
await db.sequelize.transaction(async (transaction) => {
|
||||
for (const record of roles) {
|
||||
await record.update(
|
||||
{deletedBy: currentUser.id},
|
||||
{transaction}
|
||||
);
|
||||
}
|
||||
for (const record of roles) {
|
||||
await record.destroy({transaction});
|
||||
}
|
||||
});
|
||||
|
||||
|
||||
return roles;
|
||||
}
|
||||
|
||||
static async remove(id, options) {
|
||||
const currentUser = (options && options.currentUser) || {id: null};
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const roles = await db.roles.findByPk(id, options);
|
||||
|
||||
await roles.update({
|
||||
deletedBy: currentUser.id
|
||||
}, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
await roles.destroy({
|
||||
transaction
|
||||
});
|
||||
|
||||
return roles;
|
||||
}
|
||||
|
||||
static async findBy(where, options) {
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const roles = await db.roles.findOne(
|
||||
{ where },
|
||||
{ transaction },
|
||||
);
|
||||
|
||||
if (!roles) {
|
||||
return roles;
|
||||
}
|
||||
|
||||
const output = roles.get({plain: true});
|
||||
|
||||
|
||||
output.users_app_role = await roles.getUsers_app_role({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
output.permissions = await roles.getPermissions({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
|
||||
return output;
|
||||
}
|
||||
|
||||
static async findAll(
|
||||
filter,
|
||||
options
|
||||
) {
|
||||
const limit = filter.limit || 0;
|
||||
let offset = 0;
|
||||
let where = {};
|
||||
const currentPage = +filter.page;
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
offset = currentPage * limit;
|
||||
|
||||
const orderBy = null;
|
||||
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
let include = [
|
||||
|
||||
|
||||
{
|
||||
model: db.permissions,
|
||||
as: 'permissions',
|
||||
required: false,
|
||||
},
|
||||
|
||||
|
||||
];
|
||||
|
||||
if (filter) {
|
||||
if (filter.id) {
|
||||
where = {
|
||||
...where,
|
||||
['id']: Utils.uuid(filter.id),
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
if (filter.name) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'roles',
|
||||
'name',
|
||||
filter.name,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.role_customization) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'roles',
|
||||
'role_customization',
|
||||
filter.role_customization,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
if (filter.active !== undefined) {
|
||||
where = {
|
||||
...where,
|
||||
active: filter.active === true || filter.active === 'true'
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
if (filter.permissions) {
|
||||
const searchTerms = filter.permissions.split('|');
|
||||
|
||||
include = [
|
||||
{
|
||||
model: db.permissions,
|
||||
as: 'permissions_filter',
|
||||
required: searchTerms.length > 0,
|
||||
where: searchTerms.length > 0 ? {
|
||||
[Op.or]: [
|
||||
{ id: { [Op.in]: searchTerms.map(term => Utils.uuid(term)) } },
|
||||
{
|
||||
name: {
|
||||
[Op.or]: searchTerms.map(term => ({ [Op.iLike]: `%${term}%` }))
|
||||
}
|
||||
}
|
||||
]
|
||||
} : undefined
|
||||
},
|
||||
...include,
|
||||
]
|
||||
}
|
||||
|
||||
|
||||
if (filter.createdAtRange) {
|
||||
const [start, end] = filter.createdAtRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
['createdAt']: {
|
||||
...where.createdAt,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
['createdAt']: {
|
||||
...where.createdAt,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
const queryOptions = {
|
||||
where,
|
||||
include,
|
||||
distinct: true,
|
||||
order: filter.field && filter.sort
|
||||
? [[filter.field, filter.sort]]
|
||||
: [['createdAt', 'desc']],
|
||||
transaction: options?.transaction,
|
||||
logging: console.log
|
||||
};
|
||||
|
||||
if (!options?.countOnly) {
|
||||
queryOptions.limit = limit ? Number(limit) : undefined;
|
||||
queryOptions.offset = offset ? Number(offset) : undefined;
|
||||
}
|
||||
|
||||
try {
|
||||
const { rows, count } = await db.roles.findAndCountAll(queryOptions);
|
||||
|
||||
return {
|
||||
rows: options?.countOnly ? [] : rows,
|
||||
count: count
|
||||
};
|
||||
} catch (error) {
|
||||
console.error('Error executing query:', error);
|
||||
throw error;
|
||||
}
|
||||
}
|
||||
|
||||
static async findAllAutocomplete(query, limit, offset, ) {
|
||||
let where = {};
|
||||
|
||||
|
||||
|
||||
if (query) {
|
||||
where = {
|
||||
[Op.or]: [
|
||||
{ ['id']: Utils.uuid(query) },
|
||||
Utils.ilike(
|
||||
'roles',
|
||||
'name',
|
||||
query,
|
||||
),
|
||||
],
|
||||
};
|
||||
}
|
||||
|
||||
const records = await db.roles.findAll({
|
||||
attributes: [ 'id', 'name' ],
|
||||
where,
|
||||
limit: limit ? Number(limit) : undefined,
|
||||
offset: offset ? Number(offset) : undefined,
|
||||
orderBy: [['name', 'ASC']],
|
||||
});
|
||||
|
||||
return records.map((record) => ({
|
||||
id: record.id,
|
||||
label: record.name,
|
||||
}));
|
||||
}
|
||||
|
||||
|
||||
};
|
||||
|
||||
622
backend/src/db/api/task_notes.js
Normal file
622
backend/src/db/api/task_notes.js
Normal file
@ -0,0 +1,622 @@
|
||||
|
||||
const db = require('../models');
|
||||
const FileDBApi = require('./file');
|
||||
const crypto = require('crypto');
|
||||
const Utils = require('../utils');
|
||||
|
||||
|
||||
|
||||
const Sequelize = db.Sequelize;
|
||||
const Op = Sequelize.Op;
|
||||
|
||||
module.exports = class Task_notesDBApi {
|
||||
|
||||
|
||||
|
||||
static async create(data, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const task_notes = await db.task_notes.create(
|
||||
{
|
||||
id: data.id || undefined,
|
||||
|
||||
type: data.type
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
priority: data.priority
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
status: data.status
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
due_datetime: data.due_datetime
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
title_text: data.title_text
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
details: data.details
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
importHash: data.importHash || null,
|
||||
createdById: currentUser.id,
|
||||
updatedById: currentUser.id,
|
||||
},
|
||||
{ transaction },
|
||||
);
|
||||
|
||||
|
||||
await task_notes.setPatient( data.patient || null, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
await task_notes.setTumor_case( data.tumor_case || null, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
await task_notes.setAssigned_user( data.assigned_user || null, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
await FileDBApi.replaceRelationFiles(
|
||||
{
|
||||
belongsTo: db.task_notes.getTableName(),
|
||||
belongsToColumn: 'attachments',
|
||||
belongsToId: task_notes.id,
|
||||
},
|
||||
data.attachments,
|
||||
options,
|
||||
);
|
||||
|
||||
|
||||
return task_notes;
|
||||
}
|
||||
|
||||
|
||||
static async bulkImport(data, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
// Prepare data - wrapping individual data transformations in a map() method
|
||||
const task_notesData = data.map((item, index) => ({
|
||||
id: item.id || undefined,
|
||||
|
||||
type: item.type
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
priority: item.priority
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
status: item.status
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
due_datetime: item.due_datetime
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
title_text: item.title_text
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
details: item.details
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
importHash: item.importHash || null,
|
||||
createdById: currentUser.id,
|
||||
updatedById: currentUser.id,
|
||||
createdAt: new Date(Date.now() + index * 1000),
|
||||
}));
|
||||
|
||||
// Bulk create items
|
||||
const task_notes = await db.task_notes.bulkCreate(task_notesData, { transaction });
|
||||
|
||||
// For each item created, replace relation files
|
||||
|
||||
for (let i = 0; i < task_notes.length; i++) {
|
||||
await FileDBApi.replaceRelationFiles(
|
||||
{
|
||||
belongsTo: db.task_notes.getTableName(),
|
||||
belongsToColumn: 'attachments',
|
||||
belongsToId: task_notes[i].id,
|
||||
},
|
||||
data[i].attachments,
|
||||
options,
|
||||
);
|
||||
}
|
||||
|
||||
|
||||
return task_notes;
|
||||
}
|
||||
|
||||
static async update(id, data, options) {
|
||||
const currentUser = (options && options.currentUser) || {id: null};
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
|
||||
const task_notes = await db.task_notes.findByPk(id, {}, {transaction});
|
||||
|
||||
|
||||
|
||||
|
||||
const updatePayload = {};
|
||||
|
||||
if (data.type !== undefined) updatePayload.type = data.type;
|
||||
|
||||
|
||||
if (data.priority !== undefined) updatePayload.priority = data.priority;
|
||||
|
||||
|
||||
if (data.status !== undefined) updatePayload.status = data.status;
|
||||
|
||||
|
||||
if (data.due_datetime !== undefined) updatePayload.due_datetime = data.due_datetime;
|
||||
|
||||
|
||||
if (data.title_text !== undefined) updatePayload.title_text = data.title_text;
|
||||
|
||||
|
||||
if (data.details !== undefined) updatePayload.details = data.details;
|
||||
|
||||
|
||||
updatePayload.updatedById = currentUser.id;
|
||||
|
||||
await task_notes.update(updatePayload, {transaction});
|
||||
|
||||
|
||||
|
||||
if (data.patient !== undefined) {
|
||||
await task_notes.setPatient(
|
||||
|
||||
data.patient,
|
||||
|
||||
{ transaction }
|
||||
);
|
||||
}
|
||||
|
||||
if (data.tumor_case !== undefined) {
|
||||
await task_notes.setTumor_case(
|
||||
|
||||
data.tumor_case,
|
||||
|
||||
{ transaction }
|
||||
);
|
||||
}
|
||||
|
||||
if (data.assigned_user !== undefined) {
|
||||
await task_notes.setAssigned_user(
|
||||
|
||||
data.assigned_user,
|
||||
|
||||
{ transaction }
|
||||
);
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
await FileDBApi.replaceRelationFiles(
|
||||
{
|
||||
belongsTo: db.task_notes.getTableName(),
|
||||
belongsToColumn: 'attachments',
|
||||
belongsToId: task_notes.id,
|
||||
},
|
||||
data.attachments,
|
||||
options,
|
||||
);
|
||||
|
||||
|
||||
return task_notes;
|
||||
}
|
||||
|
||||
static async deleteByIds(ids, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const task_notes = await db.task_notes.findAll({
|
||||
where: {
|
||||
id: {
|
||||
[Op.in]: ids,
|
||||
},
|
||||
},
|
||||
transaction,
|
||||
});
|
||||
|
||||
await db.sequelize.transaction(async (transaction) => {
|
||||
for (const record of task_notes) {
|
||||
await record.update(
|
||||
{deletedBy: currentUser.id},
|
||||
{transaction}
|
||||
);
|
||||
}
|
||||
for (const record of task_notes) {
|
||||
await record.destroy({transaction});
|
||||
}
|
||||
});
|
||||
|
||||
|
||||
return task_notes;
|
||||
}
|
||||
|
||||
static async remove(id, options) {
|
||||
const currentUser = (options && options.currentUser) || {id: null};
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const task_notes = await db.task_notes.findByPk(id, options);
|
||||
|
||||
await task_notes.update({
|
||||
deletedBy: currentUser.id
|
||||
}, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
await task_notes.destroy({
|
||||
transaction
|
||||
});
|
||||
|
||||
return task_notes;
|
||||
}
|
||||
|
||||
static async findBy(where, options) {
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const task_notes = await db.task_notes.findOne(
|
||||
{ where },
|
||||
{ transaction },
|
||||
);
|
||||
|
||||
if (!task_notes) {
|
||||
return task_notes;
|
||||
}
|
||||
|
||||
const output = task_notes.get({plain: true});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
output.patient = await task_notes.getPatient({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
output.tumor_case = await task_notes.getTumor_case({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
output.assigned_user = await task_notes.getAssigned_user({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
output.attachments = await task_notes.getAttachments({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
|
||||
return output;
|
||||
}
|
||||
|
||||
static async findAll(
|
||||
filter,
|
||||
options
|
||||
) {
|
||||
const limit = filter.limit || 0;
|
||||
let offset = 0;
|
||||
let where = {};
|
||||
const currentPage = +filter.page;
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
offset = currentPage * limit;
|
||||
|
||||
const orderBy = null;
|
||||
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
let include = [
|
||||
|
||||
{
|
||||
model: db.patients,
|
||||
as: 'patient',
|
||||
|
||||
where: filter.patient ? {
|
||||
[Op.or]: [
|
||||
{ id: { [Op.in]: filter.patient.split('|').map(term => Utils.uuid(term)) } },
|
||||
{
|
||||
full_name: {
|
||||
[Op.or]: filter.patient.split('|').map(term => ({ [Op.iLike]: `%${term}%` }))
|
||||
}
|
||||
},
|
||||
]
|
||||
} : {},
|
||||
|
||||
},
|
||||
|
||||
{
|
||||
model: db.tumor_cases,
|
||||
as: 'tumor_case',
|
||||
|
||||
where: filter.tumor_case ? {
|
||||
[Op.or]: [
|
||||
{ id: { [Op.in]: filter.tumor_case.split('|').map(term => Utils.uuid(term)) } },
|
||||
{
|
||||
case_number: {
|
||||
[Op.or]: filter.tumor_case.split('|').map(term => ({ [Op.iLike]: `%${term}%` }))
|
||||
}
|
||||
},
|
||||
]
|
||||
} : {},
|
||||
|
||||
},
|
||||
|
||||
{
|
||||
model: db.users,
|
||||
as: 'assigned_user',
|
||||
|
||||
where: filter.assigned_user ? {
|
||||
[Op.or]: [
|
||||
{ id: { [Op.in]: filter.assigned_user.split('|').map(term => Utils.uuid(term)) } },
|
||||
{
|
||||
firstName: {
|
||||
[Op.or]: filter.assigned_user.split('|').map(term => ({ [Op.iLike]: `%${term}%` }))
|
||||
}
|
||||
},
|
||||
]
|
||||
} : {},
|
||||
|
||||
},
|
||||
|
||||
|
||||
|
||||
{
|
||||
model: db.file,
|
||||
as: 'attachments',
|
||||
},
|
||||
|
||||
];
|
||||
|
||||
if (filter) {
|
||||
if (filter.id) {
|
||||
where = {
|
||||
...where,
|
||||
['id']: Utils.uuid(filter.id),
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
if (filter.title_text) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'task_notes',
|
||||
'title_text',
|
||||
filter.title_text,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.details) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'task_notes',
|
||||
'details',
|
||||
filter.details,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
if (filter.due_datetimeRange) {
|
||||
const [start, end] = filter.due_datetimeRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
due_datetime: {
|
||||
...where.due_datetime,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
due_datetime: {
|
||||
...where.due_datetime,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
if (filter.active !== undefined) {
|
||||
where = {
|
||||
...where,
|
||||
active: filter.active === true || filter.active === 'true'
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
if (filter.type) {
|
||||
where = {
|
||||
...where,
|
||||
type: filter.type,
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.priority) {
|
||||
where = {
|
||||
...where,
|
||||
priority: filter.priority,
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.status) {
|
||||
where = {
|
||||
...where,
|
||||
status: filter.status,
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
if (filter.createdAtRange) {
|
||||
const [start, end] = filter.createdAtRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
['createdAt']: {
|
||||
...where.createdAt,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
['createdAt']: {
|
||||
...where.createdAt,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
const queryOptions = {
|
||||
where,
|
||||
include,
|
||||
distinct: true,
|
||||
order: filter.field && filter.sort
|
||||
? [[filter.field, filter.sort]]
|
||||
: [['createdAt', 'desc']],
|
||||
transaction: options?.transaction,
|
||||
logging: console.log
|
||||
};
|
||||
|
||||
if (!options?.countOnly) {
|
||||
queryOptions.limit = limit ? Number(limit) : undefined;
|
||||
queryOptions.offset = offset ? Number(offset) : undefined;
|
||||
}
|
||||
|
||||
try {
|
||||
const { rows, count } = await db.task_notes.findAndCountAll(queryOptions);
|
||||
|
||||
return {
|
||||
rows: options?.countOnly ? [] : rows,
|
||||
count: count
|
||||
};
|
||||
} catch (error) {
|
||||
console.error('Error executing query:', error);
|
||||
throw error;
|
||||
}
|
||||
}
|
||||
|
||||
static async findAllAutocomplete(query, limit, offset, ) {
|
||||
let where = {};
|
||||
|
||||
|
||||
|
||||
if (query) {
|
||||
where = {
|
||||
[Op.or]: [
|
||||
{ ['id']: Utils.uuid(query) },
|
||||
Utils.ilike(
|
||||
'task_notes',
|
||||
'title_text',
|
||||
query,
|
||||
),
|
||||
],
|
||||
};
|
||||
}
|
||||
|
||||
const records = await db.task_notes.findAll({
|
||||
attributes: [ 'id', 'title_text' ],
|
||||
where,
|
||||
limit: limit ? Number(limit) : undefined,
|
||||
offset: offset ? Number(offset) : undefined,
|
||||
orderBy: [['title_text', 'ASC']],
|
||||
});
|
||||
|
||||
return records.map((record) => ({
|
||||
id: record.id,
|
||||
label: record.title_text,
|
||||
}));
|
||||
}
|
||||
|
||||
|
||||
};
|
||||
|
||||
664
backend/src/db/api/treatment_protocols.js
Normal file
664
backend/src/db/api/treatment_protocols.js
Normal file
@ -0,0 +1,664 @@
|
||||
|
||||
const db = require('../models');
|
||||
const FileDBApi = require('./file');
|
||||
const crypto = require('crypto');
|
||||
const Utils = require('../utils');
|
||||
|
||||
|
||||
|
||||
const Sequelize = db.Sequelize;
|
||||
const Op = Sequelize.Op;
|
||||
|
||||
module.exports = class Treatment_protocolsDBApi {
|
||||
|
||||
|
||||
|
||||
static async create(data, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const treatment_protocols = await db.treatment_protocols.create(
|
||||
{
|
||||
id: data.id || undefined,
|
||||
|
||||
protocol_type: data.protocol_type
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
name: data.name
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
description: data.description
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
planned_cycles: data.planned_cycles
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
cycle_length_days: data.cycle_length_days
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
start_date: data.start_date
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
end_date: data.end_date
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
status: data.status
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
importHash: data.importHash || null,
|
||||
createdById: currentUser.id,
|
||||
updatedById: currentUser.id,
|
||||
},
|
||||
{ transaction },
|
||||
);
|
||||
|
||||
|
||||
await treatment_protocols.setTumor_case( data.tumor_case || null, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
await treatment_protocols.setPrescribing_user( data.prescribing_user || null, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
return treatment_protocols;
|
||||
}
|
||||
|
||||
|
||||
static async bulkImport(data, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
// Prepare data - wrapping individual data transformations in a map() method
|
||||
const treatment_protocolsData = data.map((item, index) => ({
|
||||
id: item.id || undefined,
|
||||
|
||||
protocol_type: item.protocol_type
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
name: item.name
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
description: item.description
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
planned_cycles: item.planned_cycles
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
cycle_length_days: item.cycle_length_days
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
start_date: item.start_date
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
end_date: item.end_date
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
status: item.status
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
importHash: item.importHash || null,
|
||||
createdById: currentUser.id,
|
||||
updatedById: currentUser.id,
|
||||
createdAt: new Date(Date.now() + index * 1000),
|
||||
}));
|
||||
|
||||
// Bulk create items
|
||||
const treatment_protocols = await db.treatment_protocols.bulkCreate(treatment_protocolsData, { transaction });
|
||||
|
||||
// For each item created, replace relation files
|
||||
|
||||
|
||||
return treatment_protocols;
|
||||
}
|
||||
|
||||
static async update(id, data, options) {
|
||||
const currentUser = (options && options.currentUser) || {id: null};
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
|
||||
const treatment_protocols = await db.treatment_protocols.findByPk(id, {}, {transaction});
|
||||
|
||||
|
||||
|
||||
|
||||
const updatePayload = {};
|
||||
|
||||
if (data.protocol_type !== undefined) updatePayload.protocol_type = data.protocol_type;
|
||||
|
||||
|
||||
if (data.name !== undefined) updatePayload.name = data.name;
|
||||
|
||||
|
||||
if (data.description !== undefined) updatePayload.description = data.description;
|
||||
|
||||
|
||||
if (data.planned_cycles !== undefined) updatePayload.planned_cycles = data.planned_cycles;
|
||||
|
||||
|
||||
if (data.cycle_length_days !== undefined) updatePayload.cycle_length_days = data.cycle_length_days;
|
||||
|
||||
|
||||
if (data.start_date !== undefined) updatePayload.start_date = data.start_date;
|
||||
|
||||
|
||||
if (data.end_date !== undefined) updatePayload.end_date = data.end_date;
|
||||
|
||||
|
||||
if (data.status !== undefined) updatePayload.status = data.status;
|
||||
|
||||
|
||||
updatePayload.updatedById = currentUser.id;
|
||||
|
||||
await treatment_protocols.update(updatePayload, {transaction});
|
||||
|
||||
|
||||
|
||||
if (data.tumor_case !== undefined) {
|
||||
await treatment_protocols.setTumor_case(
|
||||
|
||||
data.tumor_case,
|
||||
|
||||
{ transaction }
|
||||
);
|
||||
}
|
||||
|
||||
if (data.prescribing_user !== undefined) {
|
||||
await treatment_protocols.setPrescribing_user(
|
||||
|
||||
data.prescribing_user,
|
||||
|
||||
{ transaction }
|
||||
);
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
return treatment_protocols;
|
||||
}
|
||||
|
||||
static async deleteByIds(ids, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const treatment_protocols = await db.treatment_protocols.findAll({
|
||||
where: {
|
||||
id: {
|
||||
[Op.in]: ids,
|
||||
},
|
||||
},
|
||||
transaction,
|
||||
});
|
||||
|
||||
await db.sequelize.transaction(async (transaction) => {
|
||||
for (const record of treatment_protocols) {
|
||||
await record.update(
|
||||
{deletedBy: currentUser.id},
|
||||
{transaction}
|
||||
);
|
||||
}
|
||||
for (const record of treatment_protocols) {
|
||||
await record.destroy({transaction});
|
||||
}
|
||||
});
|
||||
|
||||
|
||||
return treatment_protocols;
|
||||
}
|
||||
|
||||
static async remove(id, options) {
|
||||
const currentUser = (options && options.currentUser) || {id: null};
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const treatment_protocols = await db.treatment_protocols.findByPk(id, options);
|
||||
|
||||
await treatment_protocols.update({
|
||||
deletedBy: currentUser.id
|
||||
}, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
await treatment_protocols.destroy({
|
||||
transaction
|
||||
});
|
||||
|
||||
return treatment_protocols;
|
||||
}
|
||||
|
||||
static async findBy(where, options) {
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const treatment_protocols = await db.treatment_protocols.findOne(
|
||||
{ where },
|
||||
{ transaction },
|
||||
);
|
||||
|
||||
if (!treatment_protocols) {
|
||||
return treatment_protocols;
|
||||
}
|
||||
|
||||
const output = treatment_protocols.get({plain: true});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
output.chemotherapy_orders_protocol = await treatment_protocols.getChemotherapy_orders_protocol({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
|
||||
output.radiotherapy_plans_protocol = await treatment_protocols.getRadiotherapy_plans_protocol({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
output.adverse_events_protocol = await treatment_protocols.getAdverse_events_protocol({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
output.tumor_case = await treatment_protocols.getTumor_case({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
output.prescribing_user = await treatment_protocols.getPrescribing_user({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
|
||||
return output;
|
||||
}
|
||||
|
||||
static async findAll(
|
||||
filter,
|
||||
options
|
||||
) {
|
||||
const limit = filter.limit || 0;
|
||||
let offset = 0;
|
||||
let where = {};
|
||||
const currentPage = +filter.page;
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
offset = currentPage * limit;
|
||||
|
||||
const orderBy = null;
|
||||
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
let include = [
|
||||
|
||||
{
|
||||
model: db.tumor_cases,
|
||||
as: 'tumor_case',
|
||||
|
||||
where: filter.tumor_case ? {
|
||||
[Op.or]: [
|
||||
{ id: { [Op.in]: filter.tumor_case.split('|').map(term => Utils.uuid(term)) } },
|
||||
{
|
||||
case_number: {
|
||||
[Op.or]: filter.tumor_case.split('|').map(term => ({ [Op.iLike]: `%${term}%` }))
|
||||
}
|
||||
},
|
||||
]
|
||||
} : {},
|
||||
|
||||
},
|
||||
|
||||
{
|
||||
model: db.users,
|
||||
as: 'prescribing_user',
|
||||
|
||||
where: filter.prescribing_user ? {
|
||||
[Op.or]: [
|
||||
{ id: { [Op.in]: filter.prescribing_user.split('|').map(term => Utils.uuid(term)) } },
|
||||
{
|
||||
firstName: {
|
||||
[Op.or]: filter.prescribing_user.split('|').map(term => ({ [Op.iLike]: `%${term}%` }))
|
||||
}
|
||||
},
|
||||
]
|
||||
} : {},
|
||||
|
||||
},
|
||||
|
||||
|
||||
|
||||
];
|
||||
|
||||
if (filter) {
|
||||
if (filter.id) {
|
||||
where = {
|
||||
...where,
|
||||
['id']: Utils.uuid(filter.id),
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
if (filter.name) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'treatment_protocols',
|
||||
'name',
|
||||
filter.name,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.description) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'treatment_protocols',
|
||||
'description',
|
||||
filter.description,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
if (filter.calendarStart && filter.calendarEnd) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.or]: [
|
||||
{
|
||||
start_date: {
|
||||
[Op.between]: [filter.calendarStart, filter.calendarEnd],
|
||||
},
|
||||
},
|
||||
{
|
||||
end_date: {
|
||||
[Op.between]: [filter.calendarStart, filter.calendarEnd],
|
||||
},
|
||||
},
|
||||
],
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
|
||||
if (filter.planned_cyclesRange) {
|
||||
const [start, end] = filter.planned_cyclesRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
planned_cycles: {
|
||||
...where.planned_cycles,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
planned_cycles: {
|
||||
...where.planned_cycles,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
|
||||
if (filter.cycle_length_daysRange) {
|
||||
const [start, end] = filter.cycle_length_daysRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
cycle_length_days: {
|
||||
...where.cycle_length_days,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
cycle_length_days: {
|
||||
...where.cycle_length_days,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
|
||||
if (filter.start_dateRange) {
|
||||
const [start, end] = filter.start_dateRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
start_date: {
|
||||
...where.start_date,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
start_date: {
|
||||
...where.start_date,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
|
||||
if (filter.end_dateRange) {
|
||||
const [start, end] = filter.end_dateRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
end_date: {
|
||||
...where.end_date,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
end_date: {
|
||||
...where.end_date,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
if (filter.active !== undefined) {
|
||||
where = {
|
||||
...where,
|
||||
active: filter.active === true || filter.active === 'true'
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
if (filter.protocol_type) {
|
||||
where = {
|
||||
...where,
|
||||
protocol_type: filter.protocol_type,
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.status) {
|
||||
where = {
|
||||
...where,
|
||||
status: filter.status,
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
if (filter.createdAtRange) {
|
||||
const [start, end] = filter.createdAtRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
['createdAt']: {
|
||||
...where.createdAt,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
['createdAt']: {
|
||||
...where.createdAt,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
const queryOptions = {
|
||||
where,
|
||||
include,
|
||||
distinct: true,
|
||||
order: filter.field && filter.sort
|
||||
? [[filter.field, filter.sort]]
|
||||
: [['createdAt', 'desc']],
|
||||
transaction: options?.transaction,
|
||||
logging: console.log
|
||||
};
|
||||
|
||||
if (!options?.countOnly) {
|
||||
queryOptions.limit = limit ? Number(limit) : undefined;
|
||||
queryOptions.offset = offset ? Number(offset) : undefined;
|
||||
}
|
||||
|
||||
try {
|
||||
const { rows, count } = await db.treatment_protocols.findAndCountAll(queryOptions);
|
||||
|
||||
return {
|
||||
rows: options?.countOnly ? [] : rows,
|
||||
count: count
|
||||
};
|
||||
} catch (error) {
|
||||
console.error('Error executing query:', error);
|
||||
throw error;
|
||||
}
|
||||
}
|
||||
|
||||
static async findAllAutocomplete(query, limit, offset, ) {
|
||||
let where = {};
|
||||
|
||||
|
||||
|
||||
if (query) {
|
||||
where = {
|
||||
[Op.or]: [
|
||||
{ ['id']: Utils.uuid(query) },
|
||||
Utils.ilike(
|
||||
'treatment_protocols',
|
||||
'name',
|
||||
query,
|
||||
),
|
||||
],
|
||||
};
|
||||
}
|
||||
|
||||
const records = await db.treatment_protocols.findAll({
|
||||
attributes: [ 'id', 'name' ],
|
||||
where,
|
||||
limit: limit ? Number(limit) : undefined,
|
||||
offset: offset ? Number(offset) : undefined,
|
||||
orderBy: [['name', 'ASC']],
|
||||
});
|
||||
|
||||
return records.map((record) => ({
|
||||
id: record.id,
|
||||
label: record.name,
|
||||
}));
|
||||
}
|
||||
|
||||
|
||||
};
|
||||
|
||||
663
backend/src/db/api/tumor_cases.js
Normal file
663
backend/src/db/api/tumor_cases.js
Normal file
@ -0,0 +1,663 @@
|
||||
|
||||
const db = require('../models');
|
||||
const FileDBApi = require('./file');
|
||||
const crypto = require('crypto');
|
||||
const Utils = require('../utils');
|
||||
|
||||
|
||||
|
||||
const Sequelize = db.Sequelize;
|
||||
const Op = Sequelize.Op;
|
||||
|
||||
module.exports = class Tumor_casesDBApi {
|
||||
|
||||
|
||||
|
||||
static async create(data, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const tumor_cases = await db.tumor_cases.create(
|
||||
{
|
||||
id: data.id || undefined,
|
||||
|
||||
case_number: data.case_number
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
cancer_type: data.cancer_type
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
primary_site: data.primary_site
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
histology: data.histology
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
biomarkers: data.biomarkers
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
stage_system: data.stage_system
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
stage: data.stage
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
diagnosis_date: data.diagnosis_date
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
intent: data.intent
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
status: data.status
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
importHash: data.importHash || null,
|
||||
createdById: currentUser.id,
|
||||
updatedById: currentUser.id,
|
||||
},
|
||||
{ transaction },
|
||||
);
|
||||
|
||||
|
||||
await tumor_cases.setPatient( data.patient || null, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
await tumor_cases.setPrimary_oncologist( data.primary_oncologist || null, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
return tumor_cases;
|
||||
}
|
||||
|
||||
|
||||
static async bulkImport(data, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
// Prepare data - wrapping individual data transformations in a map() method
|
||||
const tumor_casesData = data.map((item, index) => ({
|
||||
id: item.id || undefined,
|
||||
|
||||
case_number: item.case_number
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
cancer_type: item.cancer_type
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
primary_site: item.primary_site
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
histology: item.histology
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
biomarkers: item.biomarkers
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
stage_system: item.stage_system
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
stage: item.stage
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
diagnosis_date: item.diagnosis_date
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
intent: item.intent
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
status: item.status
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
importHash: item.importHash || null,
|
||||
createdById: currentUser.id,
|
||||
updatedById: currentUser.id,
|
||||
createdAt: new Date(Date.now() + index * 1000),
|
||||
}));
|
||||
|
||||
// Bulk create items
|
||||
const tumor_cases = await db.tumor_cases.bulkCreate(tumor_casesData, { transaction });
|
||||
|
||||
// For each item created, replace relation files
|
||||
|
||||
|
||||
return tumor_cases;
|
||||
}
|
||||
|
||||
static async update(id, data, options) {
|
||||
const currentUser = (options && options.currentUser) || {id: null};
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
|
||||
const tumor_cases = await db.tumor_cases.findByPk(id, {}, {transaction});
|
||||
|
||||
|
||||
|
||||
|
||||
const updatePayload = {};
|
||||
|
||||
if (data.case_number !== undefined) updatePayload.case_number = data.case_number;
|
||||
|
||||
|
||||
if (data.cancer_type !== undefined) updatePayload.cancer_type = data.cancer_type;
|
||||
|
||||
|
||||
if (data.primary_site !== undefined) updatePayload.primary_site = data.primary_site;
|
||||
|
||||
|
||||
if (data.histology !== undefined) updatePayload.histology = data.histology;
|
||||
|
||||
|
||||
if (data.biomarkers !== undefined) updatePayload.biomarkers = data.biomarkers;
|
||||
|
||||
|
||||
if (data.stage_system !== undefined) updatePayload.stage_system = data.stage_system;
|
||||
|
||||
|
||||
if (data.stage !== undefined) updatePayload.stage = data.stage;
|
||||
|
||||
|
||||
if (data.diagnosis_date !== undefined) updatePayload.diagnosis_date = data.diagnosis_date;
|
||||
|
||||
|
||||
if (data.intent !== undefined) updatePayload.intent = data.intent;
|
||||
|
||||
|
||||
if (data.status !== undefined) updatePayload.status = data.status;
|
||||
|
||||
|
||||
updatePayload.updatedById = currentUser.id;
|
||||
|
||||
await tumor_cases.update(updatePayload, {transaction});
|
||||
|
||||
|
||||
|
||||
if (data.patient !== undefined) {
|
||||
await tumor_cases.setPatient(
|
||||
|
||||
data.patient,
|
||||
|
||||
{ transaction }
|
||||
);
|
||||
}
|
||||
|
||||
if (data.primary_oncologist !== undefined) {
|
||||
await tumor_cases.setPrimary_oncologist(
|
||||
|
||||
data.primary_oncologist,
|
||||
|
||||
{ transaction }
|
||||
);
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
return tumor_cases;
|
||||
}
|
||||
|
||||
static async deleteByIds(ids, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const tumor_cases = await db.tumor_cases.findAll({
|
||||
where: {
|
||||
id: {
|
||||
[Op.in]: ids,
|
||||
},
|
||||
},
|
||||
transaction,
|
||||
});
|
||||
|
||||
await db.sequelize.transaction(async (transaction) => {
|
||||
for (const record of tumor_cases) {
|
||||
await record.update(
|
||||
{deletedBy: currentUser.id},
|
||||
{transaction}
|
||||
);
|
||||
}
|
||||
for (const record of tumor_cases) {
|
||||
await record.destroy({transaction});
|
||||
}
|
||||
});
|
||||
|
||||
|
||||
return tumor_cases;
|
||||
}
|
||||
|
||||
static async remove(id, options) {
|
||||
const currentUser = (options && options.currentUser) || {id: null};
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const tumor_cases = await db.tumor_cases.findByPk(id, options);
|
||||
|
||||
await tumor_cases.update({
|
||||
deletedBy: currentUser.id
|
||||
}, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
await tumor_cases.destroy({
|
||||
transaction
|
||||
});
|
||||
|
||||
return tumor_cases;
|
||||
}
|
||||
|
||||
static async findBy(where, options) {
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const tumor_cases = await db.tumor_cases.findOne(
|
||||
{ where },
|
||||
{ transaction },
|
||||
);
|
||||
|
||||
if (!tumor_cases) {
|
||||
return tumor_cases;
|
||||
}
|
||||
|
||||
const output = tumor_cases.get({plain: true});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
output.treatment_protocols_tumor_case = await tumor_cases.getTreatment_protocols_tumor_case({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
output.appointments_tumor_case = await tumor_cases.getAppointments_tumor_case({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
output.clinical_visits_tumor_case = await tumor_cases.getClinical_visits_tumor_case({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
output.lab_orders_tumor_case = await tumor_cases.getLab_orders_tumor_case({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
output.imaging_orders_tumor_case = await tumor_cases.getImaging_orders_tumor_case({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
|
||||
output.adverse_events_tumor_case = await tumor_cases.getAdverse_events_tumor_case({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
|
||||
output.task_notes_tumor_case = await tumor_cases.getTask_notes_tumor_case({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
|
||||
output.patient = await tumor_cases.getPatient({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
output.primary_oncologist = await tumor_cases.getPrimary_oncologist({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
|
||||
return output;
|
||||
}
|
||||
|
||||
static async findAll(
|
||||
filter,
|
||||
options
|
||||
) {
|
||||
const limit = filter.limit || 0;
|
||||
let offset = 0;
|
||||
let where = {};
|
||||
const currentPage = +filter.page;
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
offset = currentPage * limit;
|
||||
|
||||
const orderBy = null;
|
||||
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
let include = [
|
||||
|
||||
{
|
||||
model: db.patients,
|
||||
as: 'patient',
|
||||
|
||||
where: filter.patient ? {
|
||||
[Op.or]: [
|
||||
{ id: { [Op.in]: filter.patient.split('|').map(term => Utils.uuid(term)) } },
|
||||
{
|
||||
full_name: {
|
||||
[Op.or]: filter.patient.split('|').map(term => ({ [Op.iLike]: `%${term}%` }))
|
||||
}
|
||||
},
|
||||
]
|
||||
} : {},
|
||||
|
||||
},
|
||||
|
||||
{
|
||||
model: db.users,
|
||||
as: 'primary_oncologist',
|
||||
|
||||
where: filter.primary_oncologist ? {
|
||||
[Op.or]: [
|
||||
{ id: { [Op.in]: filter.primary_oncologist.split('|').map(term => Utils.uuid(term)) } },
|
||||
{
|
||||
firstName: {
|
||||
[Op.or]: filter.primary_oncologist.split('|').map(term => ({ [Op.iLike]: `%${term}%` }))
|
||||
}
|
||||
},
|
||||
]
|
||||
} : {},
|
||||
|
||||
},
|
||||
|
||||
|
||||
|
||||
];
|
||||
|
||||
if (filter) {
|
||||
if (filter.id) {
|
||||
where = {
|
||||
...where,
|
||||
['id']: Utils.uuid(filter.id),
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
if (filter.case_number) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'tumor_cases',
|
||||
'case_number',
|
||||
filter.case_number,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.primary_site) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'tumor_cases',
|
||||
'primary_site',
|
||||
filter.primary_site,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.histology) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'tumor_cases',
|
||||
'histology',
|
||||
filter.histology,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.biomarkers) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'tumor_cases',
|
||||
'biomarkers',
|
||||
filter.biomarkers,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.stage) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'tumor_cases',
|
||||
'stage',
|
||||
filter.stage,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
if (filter.diagnosis_dateRange) {
|
||||
const [start, end] = filter.diagnosis_dateRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
diagnosis_date: {
|
||||
...where.diagnosis_date,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
diagnosis_date: {
|
||||
...where.diagnosis_date,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
if (filter.active !== undefined) {
|
||||
where = {
|
||||
...where,
|
||||
active: filter.active === true || filter.active === 'true'
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
if (filter.cancer_type) {
|
||||
where = {
|
||||
...where,
|
||||
cancer_type: filter.cancer_type,
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.stage_system) {
|
||||
where = {
|
||||
...where,
|
||||
stage_system: filter.stage_system,
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.intent) {
|
||||
where = {
|
||||
...where,
|
||||
intent: filter.intent,
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.status) {
|
||||
where = {
|
||||
...where,
|
||||
status: filter.status,
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
if (filter.createdAtRange) {
|
||||
const [start, end] = filter.createdAtRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
['createdAt']: {
|
||||
...where.createdAt,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
['createdAt']: {
|
||||
...where.createdAt,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
const queryOptions = {
|
||||
where,
|
||||
include,
|
||||
distinct: true,
|
||||
order: filter.field && filter.sort
|
||||
? [[filter.field, filter.sort]]
|
||||
: [['createdAt', 'desc']],
|
||||
transaction: options?.transaction,
|
||||
logging: console.log
|
||||
};
|
||||
|
||||
if (!options?.countOnly) {
|
||||
queryOptions.limit = limit ? Number(limit) : undefined;
|
||||
queryOptions.offset = offset ? Number(offset) : undefined;
|
||||
}
|
||||
|
||||
try {
|
||||
const { rows, count } = await db.tumor_cases.findAndCountAll(queryOptions);
|
||||
|
||||
return {
|
||||
rows: options?.countOnly ? [] : rows,
|
||||
count: count
|
||||
};
|
||||
} catch (error) {
|
||||
console.error('Error executing query:', error);
|
||||
throw error;
|
||||
}
|
||||
}
|
||||
|
||||
static async findAllAutocomplete(query, limit, offset, ) {
|
||||
let where = {};
|
||||
|
||||
|
||||
|
||||
if (query) {
|
||||
where = {
|
||||
[Op.or]: [
|
||||
{ ['id']: Utils.uuid(query) },
|
||||
Utils.ilike(
|
||||
'tumor_cases',
|
||||
'case_number',
|
||||
query,
|
||||
),
|
||||
],
|
||||
};
|
||||
}
|
||||
|
||||
const records = await db.tumor_cases.findAll({
|
||||
attributes: [ 'id', 'case_number' ],
|
||||
where,
|
||||
limit: limit ? Number(limit) : undefined,
|
||||
offset: offset ? Number(offset) : undefined,
|
||||
orderBy: [['case_number', 'ASC']],
|
||||
});
|
||||
|
||||
return records.map((record) => ({
|
||||
id: record.id,
|
||||
label: record.case_number,
|
||||
}));
|
||||
}
|
||||
|
||||
|
||||
};
|
||||
|
||||
998
backend/src/db/api/users.js
Normal file
998
backend/src/db/api/users.js
Normal file
@ -0,0 +1,998 @@
|
||||
|
||||
const db = require('../models');
|
||||
const FileDBApi = require('./file');
|
||||
const crypto = require('crypto');
|
||||
const Utils = require('../utils');
|
||||
|
||||
const bcrypt = require('bcrypt');
|
||||
const config = require('../../config');
|
||||
|
||||
|
||||
|
||||
const Sequelize = db.Sequelize;
|
||||
const Op = Sequelize.Op;
|
||||
|
||||
module.exports = class UsersDBApi {
|
||||
|
||||
static async create(data, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
|
||||
const users = await db.users.create(
|
||||
{
|
||||
id: data.data.id || undefined,
|
||||
|
||||
firstName: data.data.firstName
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
lastName: data.data.lastName
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
phoneNumber: data.data.phoneNumber
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
email: data.data.email
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
disabled: data.data.disabled
|
||||
||
|
||||
false
|
||||
|
||||
,
|
||||
|
||||
password: data.data.password
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
emailVerified: data.data.emailVerified
|
||||
||
|
||||
true
|
||||
|
||||
,
|
||||
|
||||
emailVerificationToken: data.data.emailVerificationToken
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
emailVerificationTokenExpiresAt: data.data.emailVerificationTokenExpiresAt
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
passwordResetToken: data.data.passwordResetToken
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
passwordResetTokenExpiresAt: data.data.passwordResetTokenExpiresAt
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
provider: data.data.provider
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
importHash: data.data.importHash || null,
|
||||
createdById: currentUser.id,
|
||||
updatedById: currentUser.id,
|
||||
},
|
||||
{ transaction },
|
||||
);
|
||||
|
||||
|
||||
|
||||
if (!data.data.app_role) {
|
||||
const role = await db.roles.findOne({
|
||||
where: { name: 'User' },
|
||||
});
|
||||
if (role) {
|
||||
await users.setApp_role(role, {
|
||||
transaction,
|
||||
});
|
||||
}
|
||||
}else{
|
||||
await users.setApp_role(data.data.app_role || null, {
|
||||
transaction,
|
||||
});
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
await users.setCustom_permissions(data.data.custom_permissions || [], {
|
||||
transaction,
|
||||
});
|
||||
|
||||
|
||||
|
||||
await FileDBApi.replaceRelationFiles(
|
||||
{
|
||||
belongsTo: db.users.getTableName(),
|
||||
belongsToColumn: 'avatar',
|
||||
belongsToId: users.id,
|
||||
},
|
||||
data.data.avatar,
|
||||
options,
|
||||
);
|
||||
|
||||
|
||||
return users;
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
static async bulkImport(data, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
// Prepare data - wrapping individual data transformations in a map() method
|
||||
const usersData = data.map((item, index) => ({
|
||||
id: item.id || undefined,
|
||||
|
||||
firstName: item.firstName
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
lastName: item.lastName
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
phoneNumber: item.phoneNumber
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
email: item.email
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
disabled: item.disabled
|
||||
||
|
||||
false
|
||||
|
||||
,
|
||||
|
||||
password: item.password
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
emailVerified: item.emailVerified
|
||||
||
|
||||
false
|
||||
|
||||
,
|
||||
|
||||
emailVerificationToken: item.emailVerificationToken
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
emailVerificationTokenExpiresAt: item.emailVerificationTokenExpiresAt
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
passwordResetToken: item.passwordResetToken
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
passwordResetTokenExpiresAt: item.passwordResetTokenExpiresAt
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
provider: item.provider
|
||||
||
|
||||
null
|
||||
,
|
||||
|
||||
importHash: item.importHash || null,
|
||||
createdById: currentUser.id,
|
||||
updatedById: currentUser.id,
|
||||
createdAt: new Date(Date.now() + index * 1000),
|
||||
}));
|
||||
|
||||
// Bulk create items
|
||||
const users = await db.users.bulkCreate(usersData, { transaction });
|
||||
|
||||
// For each item created, replace relation files
|
||||
|
||||
for (let i = 0; i < users.length; i++) {
|
||||
await FileDBApi.replaceRelationFiles(
|
||||
{
|
||||
belongsTo: db.users.getTableName(),
|
||||
belongsToColumn: 'avatar',
|
||||
belongsToId: users[i].id,
|
||||
},
|
||||
data[i].avatar,
|
||||
options,
|
||||
);
|
||||
}
|
||||
|
||||
|
||||
return users;
|
||||
}
|
||||
|
||||
static async update(id, data, options) {
|
||||
const currentUser = (options && options.currentUser) || {id: null};
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
|
||||
const users = await db.users.findByPk(id, {}, {transaction});
|
||||
|
||||
|
||||
|
||||
|
||||
if (!data?.app_role) {
|
||||
data.app_role = users?.app_role?.id;
|
||||
}
|
||||
if (!data?.custom_permissions) {
|
||||
data.custom_permissions = users?.custom_permissions?.map(item => item.id);
|
||||
}
|
||||
|
||||
if (data.password) {
|
||||
data.password = bcrypt.hashSync(
|
||||
data.password,
|
||||
config.bcrypt.saltRounds,
|
||||
);
|
||||
} else {
|
||||
data.password = users.password;
|
||||
}
|
||||
|
||||
|
||||
const updatePayload = {};
|
||||
|
||||
if (data.firstName !== undefined) updatePayload.firstName = data.firstName;
|
||||
|
||||
|
||||
if (data.lastName !== undefined) updatePayload.lastName = data.lastName;
|
||||
|
||||
|
||||
if (data.phoneNumber !== undefined) updatePayload.phoneNumber = data.phoneNumber;
|
||||
|
||||
|
||||
if (data.email !== undefined) updatePayload.email = data.email;
|
||||
|
||||
|
||||
if (data.disabled !== undefined) updatePayload.disabled = data.disabled;
|
||||
|
||||
|
||||
if (data.password !== undefined) updatePayload.password = data.password;
|
||||
|
||||
|
||||
if (data.emailVerified !== undefined) updatePayload.emailVerified = data.emailVerified;
|
||||
|
||||
else updatePayload.emailVerified = true;
|
||||
|
||||
|
||||
if (data.emailVerificationToken !== undefined) updatePayload.emailVerificationToken = data.emailVerificationToken;
|
||||
|
||||
|
||||
if (data.emailVerificationTokenExpiresAt !== undefined) updatePayload.emailVerificationTokenExpiresAt = data.emailVerificationTokenExpiresAt;
|
||||
|
||||
|
||||
if (data.passwordResetToken !== undefined) updatePayload.passwordResetToken = data.passwordResetToken;
|
||||
|
||||
|
||||
if (data.passwordResetTokenExpiresAt !== undefined) updatePayload.passwordResetTokenExpiresAt = data.passwordResetTokenExpiresAt;
|
||||
|
||||
|
||||
if (data.provider !== undefined) updatePayload.provider = data.provider;
|
||||
|
||||
|
||||
updatePayload.updatedById = currentUser.id;
|
||||
|
||||
await users.update(updatePayload, {transaction});
|
||||
|
||||
|
||||
|
||||
if (data.app_role !== undefined) {
|
||||
await users.setApp_role(
|
||||
|
||||
data.app_role,
|
||||
|
||||
{ transaction }
|
||||
);
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
if (data.custom_permissions !== undefined) {
|
||||
await users.setCustom_permissions(data.custom_permissions, { transaction });
|
||||
}
|
||||
|
||||
|
||||
|
||||
await FileDBApi.replaceRelationFiles(
|
||||
{
|
||||
belongsTo: db.users.getTableName(),
|
||||
belongsToColumn: 'avatar',
|
||||
belongsToId: users.id,
|
||||
},
|
||||
data.avatar,
|
||||
options,
|
||||
);
|
||||
|
||||
|
||||
return users;
|
||||
}
|
||||
|
||||
static async deleteByIds(ids, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const users = await db.users.findAll({
|
||||
where: {
|
||||
id: {
|
||||
[Op.in]: ids,
|
||||
},
|
||||
},
|
||||
transaction,
|
||||
});
|
||||
|
||||
await db.sequelize.transaction(async (transaction) => {
|
||||
for (const record of users) {
|
||||
await record.update(
|
||||
{deletedBy: currentUser.id},
|
||||
{transaction}
|
||||
);
|
||||
}
|
||||
for (const record of users) {
|
||||
await record.destroy({transaction});
|
||||
}
|
||||
});
|
||||
|
||||
|
||||
return users;
|
||||
}
|
||||
|
||||
static async remove(id, options) {
|
||||
const currentUser = (options && options.currentUser) || {id: null};
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const users = await db.users.findByPk(id, options);
|
||||
|
||||
await users.update({
|
||||
deletedBy: currentUser.id
|
||||
}, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
await users.destroy({
|
||||
transaction
|
||||
});
|
||||
|
||||
return users;
|
||||
}
|
||||
|
||||
static async findBy(where, options) {
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const users = await db.users.findOne(
|
||||
{ where },
|
||||
{ transaction },
|
||||
);
|
||||
|
||||
if (!users) {
|
||||
return users;
|
||||
}
|
||||
|
||||
const output = users.get({plain: true});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
output.departments_head_user = await users.getDepartments_head_user({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
output.tumor_cases_primary_oncologist = await users.getTumor_cases_primary_oncologist({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
output.treatment_protocols_prescribing_user = await users.getTreatment_protocols_prescribing_user({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
output.chemotherapy_orders_responsible_nurse = await users.getChemotherapy_orders_responsible_nurse({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
|
||||
output.radiotherapy_plans_radiation_oncologist = await users.getRadiotherapy_plans_radiation_oncologist({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
output.radiotherapy_fractions_therapist_user = await users.getRadiotherapy_fractions_therapist_user({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
output.appointments_assigned_user = await users.getAppointments_assigned_user({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
output.clinical_visits_provider_user = await users.getClinical_visits_provider_user({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
output.lab_orders_ordering_user = await users.getLab_orders_ordering_user({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
output.imaging_orders_ordering_user = await users.getImaging_orders_ordering_user({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
output.imaging_reports_radiologist_user = await users.getImaging_reports_radiologist_user({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
|
||||
output.medication_administrations_administered_by_user = await users.getMedication_administrations_administered_by_user({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
output.task_notes_assigned_user = await users.getTask_notes_assigned_user({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
|
||||
output.avatar = await users.getAvatar({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
output.app_role = await users.getApp_role({
|
||||
transaction
|
||||
});
|
||||
|
||||
if (output.app_role) {
|
||||
output.app_role_permissions = await output.app_role.getPermissions({
|
||||
transaction,
|
||||
});
|
||||
}
|
||||
|
||||
|
||||
output.custom_permissions = await users.getCustom_permissions({
|
||||
transaction
|
||||
});
|
||||
|
||||
|
||||
|
||||
return output;
|
||||
}
|
||||
|
||||
static async findAll(
|
||||
filter,
|
||||
options
|
||||
) {
|
||||
const limit = filter.limit || 0;
|
||||
let offset = 0;
|
||||
let where = {};
|
||||
const currentPage = +filter.page;
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
offset = currentPage * limit;
|
||||
|
||||
const orderBy = null;
|
||||
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
let include = [
|
||||
|
||||
{
|
||||
model: db.roles,
|
||||
as: 'app_role',
|
||||
|
||||
where: filter.app_role ? {
|
||||
[Op.or]: [
|
||||
{ id: { [Op.in]: filter.app_role.split('|').map(term => Utils.uuid(term)) } },
|
||||
{
|
||||
name: {
|
||||
[Op.or]: filter.app_role.split('|').map(term => ({ [Op.iLike]: `%${term}%` }))
|
||||
}
|
||||
},
|
||||
]
|
||||
} : {},
|
||||
|
||||
},
|
||||
|
||||
|
||||
{
|
||||
model: db.permissions,
|
||||
as: 'custom_permissions',
|
||||
required: false,
|
||||
},
|
||||
|
||||
|
||||
{
|
||||
model: db.file,
|
||||
as: 'avatar',
|
||||
},
|
||||
|
||||
];
|
||||
|
||||
if (filter) {
|
||||
if (filter.id) {
|
||||
where = {
|
||||
...where,
|
||||
['id']: Utils.uuid(filter.id),
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
if (filter.firstName) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'users',
|
||||
'firstName',
|
||||
filter.firstName,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.lastName) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'users',
|
||||
'lastName',
|
||||
filter.lastName,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.phoneNumber) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'users',
|
||||
'phoneNumber',
|
||||
filter.phoneNumber,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.email) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'users',
|
||||
'email',
|
||||
filter.email,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.password) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'users',
|
||||
'password',
|
||||
filter.password,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.emailVerificationToken) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'users',
|
||||
'emailVerificationToken',
|
||||
filter.emailVerificationToken,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.passwordResetToken) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'users',
|
||||
'passwordResetToken',
|
||||
filter.passwordResetToken,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.provider) {
|
||||
where = {
|
||||
...where,
|
||||
[Op.and]: Utils.ilike(
|
||||
'users',
|
||||
'provider',
|
||||
filter.provider,
|
||||
),
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
if (filter.emailVerificationTokenExpiresAtRange) {
|
||||
const [start, end] = filter.emailVerificationTokenExpiresAtRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
emailVerificationTokenExpiresAt: {
|
||||
...where.emailVerificationTokenExpiresAt,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
emailVerificationTokenExpiresAt: {
|
||||
...where.emailVerificationTokenExpiresAt,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
|
||||
if (filter.passwordResetTokenExpiresAtRange) {
|
||||
const [start, end] = filter.passwordResetTokenExpiresAtRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
passwordResetTokenExpiresAt: {
|
||||
...where.passwordResetTokenExpiresAt,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
passwordResetTokenExpiresAt: {
|
||||
...where.passwordResetTokenExpiresAt,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
if (filter.active !== undefined) {
|
||||
where = {
|
||||
...where,
|
||||
active: filter.active === true || filter.active === 'true'
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
if (filter.disabled) {
|
||||
where = {
|
||||
...where,
|
||||
disabled: filter.disabled,
|
||||
};
|
||||
}
|
||||
|
||||
if (filter.emailVerified) {
|
||||
where = {
|
||||
...where,
|
||||
emailVerified: filter.emailVerified,
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
if (filter.custom_permissions) {
|
||||
const searchTerms = filter.custom_permissions.split('|');
|
||||
|
||||
include = [
|
||||
{
|
||||
model: db.permissions,
|
||||
as: 'custom_permissions_filter',
|
||||
required: searchTerms.length > 0,
|
||||
where: searchTerms.length > 0 ? {
|
||||
[Op.or]: [
|
||||
{ id: { [Op.in]: searchTerms.map(term => Utils.uuid(term)) } },
|
||||
{
|
||||
name: {
|
||||
[Op.or]: searchTerms.map(term => ({ [Op.iLike]: `%${term}%` }))
|
||||
}
|
||||
}
|
||||
]
|
||||
} : undefined
|
||||
},
|
||||
...include,
|
||||
]
|
||||
}
|
||||
|
||||
|
||||
if (filter.createdAtRange) {
|
||||
const [start, end] = filter.createdAtRange;
|
||||
|
||||
if (start !== undefined && start !== null && start !== '') {
|
||||
where = {
|
||||
...where,
|
||||
['createdAt']: {
|
||||
...where.createdAt,
|
||||
[Op.gte]: start,
|
||||
},
|
||||
};
|
||||
}
|
||||
|
||||
if (end !== undefined && end !== null && end !== '') {
|
||||
where = {
|
||||
...where,
|
||||
['createdAt']: {
|
||||
...where.createdAt,
|
||||
[Op.lte]: end,
|
||||
},
|
||||
};
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
const queryOptions = {
|
||||
where,
|
||||
include,
|
||||
distinct: true,
|
||||
order: filter.field && filter.sort
|
||||
? [[filter.field, filter.sort]]
|
||||
: [['createdAt', 'desc']],
|
||||
transaction: options?.transaction,
|
||||
logging: console.log
|
||||
};
|
||||
|
||||
if (!options?.countOnly) {
|
||||
queryOptions.limit = limit ? Number(limit) : undefined;
|
||||
queryOptions.offset = offset ? Number(offset) : undefined;
|
||||
}
|
||||
|
||||
try {
|
||||
const { rows, count } = await db.users.findAndCountAll(queryOptions);
|
||||
|
||||
return {
|
||||
rows: options?.countOnly ? [] : rows,
|
||||
count: count
|
||||
};
|
||||
} catch (error) {
|
||||
console.error('Error executing query:', error);
|
||||
throw error;
|
||||
}
|
||||
}
|
||||
|
||||
static async findAllAutocomplete(query, limit, offset, ) {
|
||||
let where = {};
|
||||
|
||||
|
||||
|
||||
if (query) {
|
||||
where = {
|
||||
[Op.or]: [
|
||||
{ ['id']: Utils.uuid(query) },
|
||||
Utils.ilike(
|
||||
'users',
|
||||
'firstName',
|
||||
query,
|
||||
),
|
||||
],
|
||||
};
|
||||
}
|
||||
|
||||
const records = await db.users.findAll({
|
||||
attributes: [ 'id', 'firstName' ],
|
||||
where,
|
||||
limit: limit ? Number(limit) : undefined,
|
||||
offset: offset ? Number(offset) : undefined,
|
||||
orderBy: [['firstName', 'ASC']],
|
||||
});
|
||||
|
||||
return records.map((record) => ({
|
||||
id: record.id,
|
||||
label: record.firstName,
|
||||
}));
|
||||
}
|
||||
|
||||
|
||||
static async createFromAuth(data, options) {
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
const users = await db.users.create(
|
||||
{
|
||||
email: data.email,
|
||||
firstName: data.firstName,
|
||||
authenticationUid: data.authenticationUid,
|
||||
password: data.password,
|
||||
|
||||
},
|
||||
{ transaction },
|
||||
);
|
||||
|
||||
const app_role = await db.roles.findOne({
|
||||
where: { name: config.roles?.user || "User" },
|
||||
});
|
||||
if (app_role?.id) {
|
||||
await users.setApp_role(app_role?.id || null, {
|
||||
transaction,
|
||||
});
|
||||
}
|
||||
|
||||
await users.update(
|
||||
{
|
||||
authenticationUid: users.id,
|
||||
},
|
||||
{ transaction },
|
||||
);
|
||||
|
||||
delete users.password;
|
||||
return users;
|
||||
}
|
||||
|
||||
static async updatePassword(id, password, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const users = await db.users.findByPk(id, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
await users.update(
|
||||
{
|
||||
password,
|
||||
authenticationUid: id,
|
||||
updatedById: currentUser.id,
|
||||
},
|
||||
{ transaction },
|
||||
);
|
||||
|
||||
return users;
|
||||
}
|
||||
|
||||
static async generateEmailVerificationToken(email, options) {
|
||||
return this._generateToken(['emailVerificationToken', 'emailVerificationTokenExpiresAt'], email, options);
|
||||
}
|
||||
|
||||
static async generatePasswordResetToken(email, options) {
|
||||
return this._generateToken(['passwordResetToken', 'passwordResetTokenExpiresAt'], email, options);
|
||||
}
|
||||
|
||||
static async findByPasswordResetToken(token, options) {
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
return db.users.findOne(
|
||||
{
|
||||
where: {
|
||||
passwordResetToken: token,
|
||||
passwordResetTokenExpiresAt: {
|
||||
[db.Sequelize.Op.gt]: Date.now(),
|
||||
},
|
||||
},
|
||||
},
|
||||
{ transaction },
|
||||
);
|
||||
}
|
||||
|
||||
static async findByEmailVerificationToken(
|
||||
token,
|
||||
options,
|
||||
) {
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
return db.users.findOne(
|
||||
{
|
||||
where: {
|
||||
emailVerificationToken: token,
|
||||
emailVerificationTokenExpiresAt: {
|
||||
[db.Sequelize.Op.gt]: Date.now(),
|
||||
},
|
||||
},
|
||||
},
|
||||
{ transaction },
|
||||
);
|
||||
}
|
||||
|
||||
static async markEmailVerified(id, options) {
|
||||
const currentUser = (options && options.currentUser) || { id: null };
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
|
||||
const users = await db.users.findByPk(id, {
|
||||
transaction,
|
||||
});
|
||||
|
||||
await users.update(
|
||||
{
|
||||
emailVerified: true,
|
||||
updatedById: currentUser.id,
|
||||
},
|
||||
{ transaction },
|
||||
);
|
||||
|
||||
return true;
|
||||
}
|
||||
|
||||
static async _generateToken(keyNames, email, options) {
|
||||
const currentUser = (options && options.currentUser) || {id: null};
|
||||
const transaction = (options && options.transaction) || undefined;
|
||||
const users = await db.users.findOne(
|
||||
{
|
||||
where: { email: email.toLowerCase() },
|
||||
},
|
||||
{
|
||||
transaction,
|
||||
},
|
||||
);
|
||||
|
||||
const token = crypto
|
||||
.randomBytes(20)
|
||||
.toString('hex');
|
||||
const tokenExpiresAt = Date.now() + 360000;
|
||||
|
||||
if(users){
|
||||
await users.update(
|
||||
{
|
||||
[keyNames[0]]: token,
|
||||
[keyNames[1]]: tokenExpiresAt,
|
||||
updatedById: currentUser.id,
|
||||
},
|
||||
{transaction},
|
||||
);
|
||||
}
|
||||
|
||||
|
||||
return token;
|
||||
}
|
||||
|
||||
|
||||
|
||||
};
|
||||
|
||||
33
backend/src/db/db.config.js
Normal file
33
backend/src/db/db.config.js
Normal file
@ -0,0 +1,33 @@
|
||||
|
||||
|
||||
module.exports = {
|
||||
production: {
|
||||
dialect: 'postgres',
|
||||
username: process.env.DB_USER,
|
||||
password: process.env.DB_PASS,
|
||||
database: process.env.DB_NAME,
|
||||
host: process.env.DB_HOST,
|
||||
port: process.env.DB_PORT,
|
||||
logging: console.log,
|
||||
seederStorage: 'sequelize',
|
||||
},
|
||||
development: {
|
||||
username: 'postgres',
|
||||
dialect: 'postgres',
|
||||
password: '',
|
||||
database: 'db_oncology_service_manager',
|
||||
host: process.env.DB_HOST || 'localhost',
|
||||
logging: console.log,
|
||||
seederStorage: 'sequelize',
|
||||
},
|
||||
dev_stage: {
|
||||
dialect: 'postgres',
|
||||
username: process.env.DB_USER,
|
||||
password: process.env.DB_PASS,
|
||||
database: process.env.DB_NAME,
|
||||
host: process.env.DB_HOST,
|
||||
port: process.env.DB_PORT,
|
||||
logging: console.log,
|
||||
seederStorage: 'sequelize',
|
||||
}
|
||||
};
|
||||
5500
backend/src/db/migrations/1770991163768.js
Normal file
5500
backend/src/db/migrations/1770991163768.js
Normal file
File diff suppressed because it is too large
Load Diff
238
backend/src/db/models/adverse_events.js
Normal file
238
backend/src/db/models/adverse_events.js
Normal file
@ -0,0 +1,238 @@
|
||||
const config = require('../../config');
|
||||
const providers = config.providers;
|
||||
const crypto = require('crypto');
|
||||
const bcrypt = require('bcrypt');
|
||||
const moment = require('moment');
|
||||
|
||||
module.exports = function(sequelize, DataTypes) {
|
||||
const adverse_events = sequelize.define(
|
||||
'adverse_events',
|
||||
{
|
||||
id: {
|
||||
type: DataTypes.UUID,
|
||||
defaultValue: DataTypes.UUIDV4,
|
||||
primaryKey: true,
|
||||
},
|
||||
|
||||
event_datetime: {
|
||||
type: DataTypes.DATE,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
category: {
|
||||
type: DataTypes.ENUM,
|
||||
|
||||
|
||||
|
||||
values: [
|
||||
|
||||
"hematologic",
|
||||
|
||||
|
||||
"gastrointestinal",
|
||||
|
||||
|
||||
"dermatologic",
|
||||
|
||||
|
||||
"neurologic",
|
||||
|
||||
|
||||
"cardiac",
|
||||
|
||||
|
||||
"renal",
|
||||
|
||||
|
||||
"hepatic",
|
||||
|
||||
|
||||
"infectious",
|
||||
|
||||
|
||||
"other"
|
||||
|
||||
],
|
||||
|
||||
},
|
||||
|
||||
event_name: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
grade: {
|
||||
type: DataTypes.ENUM,
|
||||
|
||||
|
||||
|
||||
values: [
|
||||
|
||||
"1",
|
||||
|
||||
|
||||
"2",
|
||||
|
||||
|
||||
"3",
|
||||
|
||||
|
||||
"4",
|
||||
|
||||
|
||||
"5"
|
||||
|
||||
],
|
||||
|
||||
},
|
||||
|
||||
seriousness: {
|
||||
type: DataTypes.ENUM,
|
||||
|
||||
|
||||
|
||||
values: [
|
||||
|
||||
"non_serious",
|
||||
|
||||
|
||||
"serious"
|
||||
|
||||
],
|
||||
|
||||
},
|
||||
|
||||
management: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
outcome: {
|
||||
type: DataTypes.ENUM,
|
||||
|
||||
|
||||
|
||||
values: [
|
||||
|
||||
"resolved",
|
||||
|
||||
|
||||
"resolving",
|
||||
|
||||
|
||||
"ongoing",
|
||||
|
||||
|
||||
"worsened",
|
||||
|
||||
|
||||
"fatal",
|
||||
|
||||
|
||||
"unknown"
|
||||
|
||||
],
|
||||
|
||||
},
|
||||
|
||||
notes: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
importHash: {
|
||||
type: DataTypes.STRING(255),
|
||||
allowNull: true,
|
||||
unique: true,
|
||||
},
|
||||
},
|
||||
{
|
||||
timestamps: true,
|
||||
paranoid: true,
|
||||
freezeTableName: true,
|
||||
},
|
||||
);
|
||||
|
||||
adverse_events.associate = (db) => {
|
||||
|
||||
|
||||
/// loop through entities and it's fields, and if ref === current e[name] and create relation has many on parent entity
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
//end loop
|
||||
|
||||
|
||||
|
||||
db.adverse_events.belongsTo(db.patients, {
|
||||
as: 'patient',
|
||||
foreignKey: {
|
||||
name: 'patientId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
db.adverse_events.belongsTo(db.tumor_cases, {
|
||||
as: 'tumor_case',
|
||||
foreignKey: {
|
||||
name: 'tumor_caseId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
db.adverse_events.belongsTo(db.treatment_protocols, {
|
||||
as: 'protocol',
|
||||
foreignKey: {
|
||||
name: 'protocolId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
db.adverse_events.belongsTo(db.users, {
|
||||
as: 'createdBy',
|
||||
});
|
||||
|
||||
db.adverse_events.belongsTo(db.users, {
|
||||
as: 'updatedBy',
|
||||
});
|
||||
};
|
||||
|
||||
|
||||
|
||||
return adverse_events;
|
||||
};
|
||||
|
||||
|
||||
209
backend/src/db/models/appointments.js
Normal file
209
backend/src/db/models/appointments.js
Normal file
@ -0,0 +1,209 @@
|
||||
const config = require('../../config');
|
||||
const providers = config.providers;
|
||||
const crypto = require('crypto');
|
||||
const bcrypt = require('bcrypt');
|
||||
const moment = require('moment');
|
||||
|
||||
module.exports = function(sequelize, DataTypes) {
|
||||
const appointments = sequelize.define(
|
||||
'appointments',
|
||||
{
|
||||
id: {
|
||||
type: DataTypes.UUID,
|
||||
defaultValue: DataTypes.UUIDV4,
|
||||
primaryKey: true,
|
||||
},
|
||||
|
||||
appointment_type: {
|
||||
type: DataTypes.ENUM,
|
||||
|
||||
|
||||
|
||||
values: [
|
||||
|
||||
"consultation",
|
||||
|
||||
|
||||
"follow_up",
|
||||
|
||||
|
||||
"chemo_session",
|
||||
|
||||
|
||||
"radio_fraction",
|
||||
|
||||
|
||||
"lab_visit",
|
||||
|
||||
|
||||
"imaging_visit",
|
||||
|
||||
|
||||
"procedure",
|
||||
|
||||
|
||||
"other"
|
||||
|
||||
],
|
||||
|
||||
},
|
||||
|
||||
start_datetime: {
|
||||
type: DataTypes.DATE,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
end_datetime: {
|
||||
type: DataTypes.DATE,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
status: {
|
||||
type: DataTypes.ENUM,
|
||||
|
||||
|
||||
|
||||
values: [
|
||||
|
||||
"scheduled",
|
||||
|
||||
|
||||
"checked_in",
|
||||
|
||||
|
||||
"in_progress",
|
||||
|
||||
|
||||
"completed",
|
||||
|
||||
|
||||
"no_show",
|
||||
|
||||
|
||||
"cancelled"
|
||||
|
||||
],
|
||||
|
||||
},
|
||||
|
||||
location: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
reason: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
notes: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
importHash: {
|
||||
type: DataTypes.STRING(255),
|
||||
allowNull: true,
|
||||
unique: true,
|
||||
},
|
||||
},
|
||||
{
|
||||
timestamps: true,
|
||||
paranoid: true,
|
||||
freezeTableName: true,
|
||||
},
|
||||
);
|
||||
|
||||
appointments.associate = (db) => {
|
||||
|
||||
|
||||
/// loop through entities and it's fields, and if ref === current e[name] and create relation has many on parent entity
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
db.appointments.hasMany(db.clinical_visits, {
|
||||
as: 'clinical_visits_appointment',
|
||||
foreignKey: {
|
||||
name: 'appointmentId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
//end loop
|
||||
|
||||
|
||||
|
||||
db.appointments.belongsTo(db.patients, {
|
||||
as: 'patient',
|
||||
foreignKey: {
|
||||
name: 'patientId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
db.appointments.belongsTo(db.tumor_cases, {
|
||||
as: 'tumor_case',
|
||||
foreignKey: {
|
||||
name: 'tumor_caseId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
db.appointments.belongsTo(db.users, {
|
||||
as: 'assigned_user',
|
||||
foreignKey: {
|
||||
name: 'assigned_userId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
db.appointments.belongsTo(db.users, {
|
||||
as: 'createdBy',
|
||||
});
|
||||
|
||||
db.appointments.belongsTo(db.users, {
|
||||
as: 'updatedBy',
|
||||
});
|
||||
};
|
||||
|
||||
|
||||
|
||||
return appointments;
|
||||
};
|
||||
|
||||
|
||||
137
backend/src/db/models/chemo_drug_items.js
Normal file
137
backend/src/db/models/chemo_drug_items.js
Normal file
@ -0,0 +1,137 @@
|
||||
const config = require('../../config');
|
||||
const providers = config.providers;
|
||||
const crypto = require('crypto');
|
||||
const bcrypt = require('bcrypt');
|
||||
const moment = require('moment');
|
||||
|
||||
module.exports = function(sequelize, DataTypes) {
|
||||
const chemo_drug_items = sequelize.define(
|
||||
'chemo_drug_items',
|
||||
{
|
||||
id: {
|
||||
type: DataTypes.UUID,
|
||||
defaultValue: DataTypes.UUIDV4,
|
||||
primaryKey: true,
|
||||
},
|
||||
|
||||
drug_name: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
dose: {
|
||||
type: DataTypes.DECIMAL,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
dose_unit: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
calculated_bsa: {
|
||||
type: DataTypes.DECIMAL,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
dose_per_m2: {
|
||||
type: DataTypes.DECIMAL,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
diluent_volume_ml: {
|
||||
type: DataTypes.DECIMAL,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
administration_instructions: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
importHash: {
|
||||
type: DataTypes.STRING(255),
|
||||
allowNull: true,
|
||||
unique: true,
|
||||
},
|
||||
},
|
||||
{
|
||||
timestamps: true,
|
||||
paranoid: true,
|
||||
freezeTableName: true,
|
||||
},
|
||||
);
|
||||
|
||||
chemo_drug_items.associate = (db) => {
|
||||
|
||||
|
||||
/// loop through entities and it's fields, and if ref === current e[name] and create relation has many on parent entity
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
//end loop
|
||||
|
||||
|
||||
|
||||
db.chemo_drug_items.belongsTo(db.chemotherapy_orders, {
|
||||
as: 'chemo_order',
|
||||
foreignKey: {
|
||||
name: 'chemo_orderId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
db.chemo_drug_items.belongsTo(db.users, {
|
||||
as: 'createdBy',
|
||||
});
|
||||
|
||||
db.chemo_drug_items.belongsTo(db.users, {
|
||||
as: 'updatedBy',
|
||||
});
|
||||
};
|
||||
|
||||
|
||||
|
||||
return chemo_drug_items;
|
||||
};
|
||||
|
||||
|
||||
200
backend/src/db/models/chemotherapy_orders.js
Normal file
200
backend/src/db/models/chemotherapy_orders.js
Normal file
@ -0,0 +1,200 @@
|
||||
const config = require('../../config');
|
||||
const providers = config.providers;
|
||||
const crypto = require('crypto');
|
||||
const bcrypt = require('bcrypt');
|
||||
const moment = require('moment');
|
||||
|
||||
module.exports = function(sequelize, DataTypes) {
|
||||
const chemotherapy_orders = sequelize.define(
|
||||
'chemotherapy_orders',
|
||||
{
|
||||
id: {
|
||||
type: DataTypes.UUID,
|
||||
defaultValue: DataTypes.UUIDV4,
|
||||
primaryKey: true,
|
||||
},
|
||||
|
||||
cycle_number: {
|
||||
type: DataTypes.INTEGER,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
day_in_cycle: {
|
||||
type: DataTypes.INTEGER,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
planned_datetime: {
|
||||
type: DataTypes.DATE,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
route: {
|
||||
type: DataTypes.ENUM,
|
||||
|
||||
|
||||
|
||||
values: [
|
||||
|
||||
"iv",
|
||||
|
||||
|
||||
"po",
|
||||
|
||||
|
||||
"sc",
|
||||
|
||||
|
||||
"im",
|
||||
|
||||
|
||||
"other"
|
||||
|
||||
],
|
||||
|
||||
},
|
||||
|
||||
status: {
|
||||
type: DataTypes.ENUM,
|
||||
|
||||
|
||||
|
||||
values: [
|
||||
|
||||
"planned",
|
||||
|
||||
|
||||
"verified",
|
||||
|
||||
|
||||
"prepared",
|
||||
|
||||
|
||||
"administered",
|
||||
|
||||
|
||||
"held",
|
||||
|
||||
|
||||
"cancelled"
|
||||
|
||||
],
|
||||
|
||||
},
|
||||
|
||||
pre_medications: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
notes: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
importHash: {
|
||||
type: DataTypes.STRING(255),
|
||||
allowNull: true,
|
||||
unique: true,
|
||||
},
|
||||
},
|
||||
{
|
||||
timestamps: true,
|
||||
paranoid: true,
|
||||
freezeTableName: true,
|
||||
},
|
||||
);
|
||||
|
||||
chemotherapy_orders.associate = (db) => {
|
||||
|
||||
|
||||
/// loop through entities and it's fields, and if ref === current e[name] and create relation has many on parent entity
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
db.chemotherapy_orders.hasMany(db.chemo_drug_items, {
|
||||
as: 'chemo_drug_items_chemo_order',
|
||||
foreignKey: {
|
||||
name: 'chemo_orderId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
db.chemotherapy_orders.hasMany(db.medication_administrations, {
|
||||
as: 'medication_administrations_chemo_order',
|
||||
foreignKey: {
|
||||
name: 'chemo_orderId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
//end loop
|
||||
|
||||
|
||||
|
||||
db.chemotherapy_orders.belongsTo(db.treatment_protocols, {
|
||||
as: 'protocol',
|
||||
foreignKey: {
|
||||
name: 'protocolId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
db.chemotherapy_orders.belongsTo(db.users, {
|
||||
as: 'responsible_nurse',
|
||||
foreignKey: {
|
||||
name: 'responsible_nurseId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
db.chemotherapy_orders.belongsTo(db.users, {
|
||||
as: 'createdBy',
|
||||
});
|
||||
|
||||
db.chemotherapy_orders.belongsTo(db.users, {
|
||||
as: 'updatedBy',
|
||||
});
|
||||
};
|
||||
|
||||
|
||||
|
||||
return chemotherapy_orders;
|
||||
};
|
||||
|
||||
|
||||
216
backend/src/db/models/clinical_visits.js
Normal file
216
backend/src/db/models/clinical_visits.js
Normal file
@ -0,0 +1,216 @@
|
||||
const config = require('../../config');
|
||||
const providers = config.providers;
|
||||
const crypto = require('crypto');
|
||||
const bcrypt = require('bcrypt');
|
||||
const moment = require('moment');
|
||||
|
||||
module.exports = function(sequelize, DataTypes) {
|
||||
const clinical_visits = sequelize.define(
|
||||
'clinical_visits',
|
||||
{
|
||||
id: {
|
||||
type: DataTypes.UUID,
|
||||
defaultValue: DataTypes.UUIDV4,
|
||||
primaryKey: true,
|
||||
},
|
||||
|
||||
visit_datetime: {
|
||||
type: DataTypes.DATE,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
visit_type: {
|
||||
type: DataTypes.ENUM,
|
||||
|
||||
|
||||
|
||||
values: [
|
||||
|
||||
"initial",
|
||||
|
||||
|
||||
"follow_up",
|
||||
|
||||
|
||||
"toxicity_check",
|
||||
|
||||
|
||||
"treatment_assessment",
|
||||
|
||||
|
||||
"other"
|
||||
|
||||
],
|
||||
|
||||
},
|
||||
|
||||
subjective: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
objective: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
assessment: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
plan: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
weight_kg: {
|
||||
type: DataTypes.DECIMAL,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
height_cm: {
|
||||
type: DataTypes.DECIMAL,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
bsa_m2: {
|
||||
type: DataTypes.DECIMAL,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
toxicity_notes: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
importHash: {
|
||||
type: DataTypes.STRING(255),
|
||||
allowNull: true,
|
||||
unique: true,
|
||||
},
|
||||
},
|
||||
{
|
||||
timestamps: true,
|
||||
paranoid: true,
|
||||
freezeTableName: true,
|
||||
},
|
||||
);
|
||||
|
||||
clinical_visits.associate = (db) => {
|
||||
|
||||
|
||||
/// loop through entities and it's fields, and if ref === current e[name] and create relation has many on parent entity
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
db.clinical_visits.hasMany(db.lab_orders, {
|
||||
as: 'lab_orders_visit',
|
||||
foreignKey: {
|
||||
name: 'visitId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
db.clinical_visits.hasMany(db.imaging_orders, {
|
||||
as: 'imaging_orders_visit',
|
||||
foreignKey: {
|
||||
name: 'visitId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
//end loop
|
||||
|
||||
|
||||
|
||||
db.clinical_visits.belongsTo(db.patients, {
|
||||
as: 'patient',
|
||||
foreignKey: {
|
||||
name: 'patientId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
db.clinical_visits.belongsTo(db.tumor_cases, {
|
||||
as: 'tumor_case',
|
||||
foreignKey: {
|
||||
name: 'tumor_caseId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
db.clinical_visits.belongsTo(db.appointments, {
|
||||
as: 'appointment',
|
||||
foreignKey: {
|
||||
name: 'appointmentId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
db.clinical_visits.belongsTo(db.users, {
|
||||
as: 'provider_user',
|
||||
foreignKey: {
|
||||
name: 'provider_userId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
db.clinical_visits.belongsTo(db.users, {
|
||||
as: 'createdBy',
|
||||
});
|
||||
|
||||
db.clinical_visits.belongsTo(db.users, {
|
||||
as: 'updatedBy',
|
||||
});
|
||||
};
|
||||
|
||||
|
||||
|
||||
return clinical_visits;
|
||||
};
|
||||
|
||||
|
||||
124
backend/src/db/models/departments.js
Normal file
124
backend/src/db/models/departments.js
Normal file
@ -0,0 +1,124 @@
|
||||
const config = require('../../config');
|
||||
const providers = config.providers;
|
||||
const crypto = require('crypto');
|
||||
const bcrypt = require('bcrypt');
|
||||
const moment = require('moment');
|
||||
|
||||
module.exports = function(sequelize, DataTypes) {
|
||||
const departments = sequelize.define(
|
||||
'departments',
|
||||
{
|
||||
id: {
|
||||
type: DataTypes.UUID,
|
||||
defaultValue: DataTypes.UUIDV4,
|
||||
primaryKey: true,
|
||||
},
|
||||
|
||||
name: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
code: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
location: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
phone: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
importHash: {
|
||||
type: DataTypes.STRING(255),
|
||||
allowNull: true,
|
||||
unique: true,
|
||||
},
|
||||
},
|
||||
{
|
||||
timestamps: true,
|
||||
paranoid: true,
|
||||
freezeTableName: true,
|
||||
},
|
||||
);
|
||||
|
||||
departments.associate = (db) => {
|
||||
|
||||
|
||||
/// loop through entities and it's fields, and if ref === current e[name] and create relation has many on parent entity
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
db.departments.hasMany(db.patients, {
|
||||
as: 'patients_department',
|
||||
foreignKey: {
|
||||
name: 'departmentId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
//end loop
|
||||
|
||||
|
||||
|
||||
db.departments.belongsTo(db.users, {
|
||||
as: 'head_user',
|
||||
foreignKey: {
|
||||
name: 'head_userId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
db.departments.belongsTo(db.users, {
|
||||
as: 'createdBy',
|
||||
});
|
||||
|
||||
db.departments.belongsTo(db.users, {
|
||||
as: 'updatedBy',
|
||||
});
|
||||
};
|
||||
|
||||
|
||||
|
||||
return departments;
|
||||
};
|
||||
|
||||
|
||||
53
backend/src/db/models/file.js
Normal file
53
backend/src/db/models/file.js
Normal file
@ -0,0 +1,53 @@
|
||||
module.exports = function(sequelize, DataTypes) {
|
||||
const file = sequelize.define(
|
||||
'file',
|
||||
{
|
||||
id: {
|
||||
type: DataTypes.UUID,
|
||||
defaultValue: DataTypes.UUIDV4,
|
||||
primaryKey: true,
|
||||
},
|
||||
belongsTo: DataTypes.STRING(255),
|
||||
belongsToId: DataTypes.UUID,
|
||||
belongsToColumn: DataTypes.STRING(255),
|
||||
name: {
|
||||
type: DataTypes.STRING(2083),
|
||||
allowNull: false,
|
||||
validate: {
|
||||
notEmpty: true,
|
||||
},
|
||||
},
|
||||
sizeInBytes: {
|
||||
type: DataTypes.INTEGER,
|
||||
allowNull: true,
|
||||
},
|
||||
privateUrl: {
|
||||
type: DataTypes.STRING(2083),
|
||||
allowNull: true,
|
||||
},
|
||||
publicUrl: {
|
||||
type: DataTypes.STRING(2083),
|
||||
allowNull: false,
|
||||
validate: {
|
||||
notEmpty: true,
|
||||
},
|
||||
},
|
||||
},
|
||||
{
|
||||
timestamps: true,
|
||||
paranoid: true,
|
||||
},
|
||||
);
|
||||
|
||||
file.associate = (db) => {
|
||||
db.file.belongsTo(db.users, {
|
||||
as: 'createdBy',
|
||||
});
|
||||
|
||||
db.file.belongsTo(db.users, {
|
||||
as: 'updatedBy',
|
||||
});
|
||||
};
|
||||
|
||||
return file;
|
||||
};
|
||||
219
backend/src/db/models/imaging_orders.js
Normal file
219
backend/src/db/models/imaging_orders.js
Normal file
@ -0,0 +1,219 @@
|
||||
const config = require('../../config');
|
||||
const providers = config.providers;
|
||||
const crypto = require('crypto');
|
||||
const bcrypt = require('bcrypt');
|
||||
const moment = require('moment');
|
||||
|
||||
module.exports = function(sequelize, DataTypes) {
|
||||
const imaging_orders = sequelize.define(
|
||||
'imaging_orders',
|
||||
{
|
||||
id: {
|
||||
type: DataTypes.UUID,
|
||||
defaultValue: DataTypes.UUIDV4,
|
||||
primaryKey: true,
|
||||
},
|
||||
|
||||
ordered_datetime: {
|
||||
type: DataTypes.DATE,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
modality: {
|
||||
type: DataTypes.ENUM,
|
||||
|
||||
|
||||
|
||||
values: [
|
||||
|
||||
"ct",
|
||||
|
||||
|
||||
"mri",
|
||||
|
||||
|
||||
"pet_ct",
|
||||
|
||||
|
||||
"xray",
|
||||
|
||||
|
||||
"ultrasound",
|
||||
|
||||
|
||||
"mammography",
|
||||
|
||||
|
||||
"nuclear_medicine",
|
||||
|
||||
|
||||
"other"
|
||||
|
||||
],
|
||||
|
||||
},
|
||||
|
||||
body_part: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
priority: {
|
||||
type: DataTypes.ENUM,
|
||||
|
||||
|
||||
|
||||
values: [
|
||||
|
||||
"routine",
|
||||
|
||||
|
||||
"urgent",
|
||||
|
||||
|
||||
"stat"
|
||||
|
||||
],
|
||||
|
||||
},
|
||||
|
||||
status: {
|
||||
type: DataTypes.ENUM,
|
||||
|
||||
|
||||
|
||||
values: [
|
||||
|
||||
"ordered",
|
||||
|
||||
|
||||
"scheduled",
|
||||
|
||||
|
||||
"performed",
|
||||
|
||||
|
||||
"reported",
|
||||
|
||||
|
||||
"cancelled"
|
||||
|
||||
],
|
||||
|
||||
},
|
||||
|
||||
clinical_indication: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
importHash: {
|
||||
type: DataTypes.STRING(255),
|
||||
allowNull: true,
|
||||
unique: true,
|
||||
},
|
||||
},
|
||||
{
|
||||
timestamps: true,
|
||||
paranoid: true,
|
||||
freezeTableName: true,
|
||||
},
|
||||
);
|
||||
|
||||
imaging_orders.associate = (db) => {
|
||||
|
||||
|
||||
/// loop through entities and it's fields, and if ref === current e[name] and create relation has many on parent entity
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
db.imaging_orders.hasMany(db.imaging_reports, {
|
||||
as: 'imaging_reports_imaging_order',
|
||||
foreignKey: {
|
||||
name: 'imaging_orderId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
//end loop
|
||||
|
||||
|
||||
|
||||
db.imaging_orders.belongsTo(db.patients, {
|
||||
as: 'patient',
|
||||
foreignKey: {
|
||||
name: 'patientId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
db.imaging_orders.belongsTo(db.tumor_cases, {
|
||||
as: 'tumor_case',
|
||||
foreignKey: {
|
||||
name: 'tumor_caseId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
db.imaging_orders.belongsTo(db.clinical_visits, {
|
||||
as: 'visit',
|
||||
foreignKey: {
|
||||
name: 'visitId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
db.imaging_orders.belongsTo(db.users, {
|
||||
as: 'ordering_user',
|
||||
foreignKey: {
|
||||
name: 'ordering_userId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
db.imaging_orders.belongsTo(db.users, {
|
||||
as: 'createdBy',
|
||||
});
|
||||
|
||||
db.imaging_orders.belongsTo(db.users, {
|
||||
as: 'updatedBy',
|
||||
});
|
||||
};
|
||||
|
||||
|
||||
|
||||
return imaging_orders;
|
||||
};
|
||||
|
||||
|
||||
163
backend/src/db/models/imaging_reports.js
Normal file
163
backend/src/db/models/imaging_reports.js
Normal file
@ -0,0 +1,163 @@
|
||||
const config = require('../../config');
|
||||
const providers = config.providers;
|
||||
const crypto = require('crypto');
|
||||
const bcrypt = require('bcrypt');
|
||||
const moment = require('moment');
|
||||
|
||||
module.exports = function(sequelize, DataTypes) {
|
||||
const imaging_reports = sequelize.define(
|
||||
'imaging_reports',
|
||||
{
|
||||
id: {
|
||||
type: DataTypes.UUID,
|
||||
defaultValue: DataTypes.UUIDV4,
|
||||
primaryKey: true,
|
||||
},
|
||||
|
||||
performed_datetime: {
|
||||
type: DataTypes.DATE,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
reported_datetime: {
|
||||
type: DataTypes.DATE,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
report_status: {
|
||||
type: DataTypes.ENUM,
|
||||
|
||||
|
||||
|
||||
values: [
|
||||
|
||||
"preliminary",
|
||||
|
||||
|
||||
"final",
|
||||
|
||||
|
||||
"amended"
|
||||
|
||||
],
|
||||
|
||||
},
|
||||
|
||||
findings: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
impression: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
importHash: {
|
||||
type: DataTypes.STRING(255),
|
||||
allowNull: true,
|
||||
unique: true,
|
||||
},
|
||||
},
|
||||
{
|
||||
timestamps: true,
|
||||
paranoid: true,
|
||||
freezeTableName: true,
|
||||
},
|
||||
);
|
||||
|
||||
imaging_reports.associate = (db) => {
|
||||
|
||||
|
||||
/// loop through entities and it's fields, and if ref === current e[name] and create relation has many on parent entity
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
//end loop
|
||||
|
||||
|
||||
|
||||
db.imaging_reports.belongsTo(db.imaging_orders, {
|
||||
as: 'imaging_order',
|
||||
foreignKey: {
|
||||
name: 'imaging_orderId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
db.imaging_reports.belongsTo(db.users, {
|
||||
as: 'radiologist_user',
|
||||
foreignKey: {
|
||||
name: 'radiologist_userId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
|
||||
db.imaging_reports.hasMany(db.file, {
|
||||
as: 'report_file',
|
||||
foreignKey: 'belongsToId',
|
||||
constraints: false,
|
||||
scope: {
|
||||
belongsTo: db.imaging_reports.getTableName(),
|
||||
belongsToColumn: 'report_file',
|
||||
},
|
||||
});
|
||||
|
||||
db.imaging_reports.hasMany(db.file, {
|
||||
as: 'dicom_archive',
|
||||
foreignKey: 'belongsToId',
|
||||
constraints: false,
|
||||
scope: {
|
||||
belongsTo: db.imaging_reports.getTableName(),
|
||||
belongsToColumn: 'dicom_archive',
|
||||
},
|
||||
});
|
||||
|
||||
|
||||
db.imaging_reports.belongsTo(db.users, {
|
||||
as: 'createdBy',
|
||||
});
|
||||
|
||||
db.imaging_reports.belongsTo(db.users, {
|
||||
as: 'updatedBy',
|
||||
});
|
||||
};
|
||||
|
||||
|
||||
|
||||
return imaging_reports;
|
||||
};
|
||||
|
||||
|
||||
38
backend/src/db/models/index.js
Normal file
38
backend/src/db/models/index.js
Normal file
@ -0,0 +1,38 @@
|
||||
'use strict';
|
||||
|
||||
const fs = require('fs');
|
||||
const path = require('path');
|
||||
const Sequelize = require('sequelize');
|
||||
const basename = path.basename(__filename);
|
||||
const env = process.env.NODE_ENV || 'development';
|
||||
const config = require("../db.config")[env];
|
||||
const db = {};
|
||||
|
||||
let sequelize;
|
||||
console.log(env);
|
||||
if (config.use_env_variable) {
|
||||
sequelize = new Sequelize(process.env[config.use_env_variable], config);
|
||||
} else {
|
||||
sequelize = new Sequelize(config.database, config.username, config.password, config);
|
||||
}
|
||||
|
||||
fs
|
||||
.readdirSync(__dirname)
|
||||
.filter(file => {
|
||||
return (file.indexOf('.') !== 0) && (file !== basename) && (file.slice(-3) === '.js');
|
||||
})
|
||||
.forEach(file => {
|
||||
const model = require(path.join(__dirname, file))(sequelize, Sequelize.DataTypes)
|
||||
db[model.name] = model;
|
||||
});
|
||||
|
||||
Object.keys(db).forEach(modelName => {
|
||||
if (db[modelName].associate) {
|
||||
db[modelName].associate(db);
|
||||
}
|
||||
});
|
||||
|
||||
db.sequelize = sequelize;
|
||||
db.Sequelize = Sequelize;
|
||||
|
||||
module.exports = db;
|
||||
178
backend/src/db/models/lab_orders.js
Normal file
178
backend/src/db/models/lab_orders.js
Normal file
@ -0,0 +1,178 @@
|
||||
const config = require('../../config');
|
||||
const providers = config.providers;
|
||||
const crypto = require('crypto');
|
||||
const bcrypt = require('bcrypt');
|
||||
const moment = require('moment');
|
||||
|
||||
module.exports = function(sequelize, DataTypes) {
|
||||
const lab_orders = sequelize.define(
|
||||
'lab_orders',
|
||||
{
|
||||
id: {
|
||||
type: DataTypes.UUID,
|
||||
defaultValue: DataTypes.UUIDV4,
|
||||
primaryKey: true,
|
||||
},
|
||||
|
||||
ordered_datetime: {
|
||||
type: DataTypes.DATE,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
priority: {
|
||||
type: DataTypes.ENUM,
|
||||
|
||||
|
||||
|
||||
values: [
|
||||
|
||||
"routine",
|
||||
|
||||
|
||||
"urgent",
|
||||
|
||||
|
||||
"stat"
|
||||
|
||||
],
|
||||
|
||||
},
|
||||
|
||||
status: {
|
||||
type: DataTypes.ENUM,
|
||||
|
||||
|
||||
|
||||
values: [
|
||||
|
||||
"ordered",
|
||||
|
||||
|
||||
"collected",
|
||||
|
||||
|
||||
"in_lab",
|
||||
|
||||
|
||||
"resulted",
|
||||
|
||||
|
||||
"cancelled"
|
||||
|
||||
],
|
||||
|
||||
},
|
||||
|
||||
notes: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
importHash: {
|
||||
type: DataTypes.STRING(255),
|
||||
allowNull: true,
|
||||
unique: true,
|
||||
},
|
||||
},
|
||||
{
|
||||
timestamps: true,
|
||||
paranoid: true,
|
||||
freezeTableName: true,
|
||||
},
|
||||
);
|
||||
|
||||
lab_orders.associate = (db) => {
|
||||
|
||||
|
||||
/// loop through entities and it's fields, and if ref === current e[name] and create relation has many on parent entity
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
db.lab_orders.hasMany(db.lab_results, {
|
||||
as: 'lab_results_lab_order',
|
||||
foreignKey: {
|
||||
name: 'lab_orderId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
//end loop
|
||||
|
||||
|
||||
|
||||
db.lab_orders.belongsTo(db.patients, {
|
||||
as: 'patient',
|
||||
foreignKey: {
|
||||
name: 'patientId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
db.lab_orders.belongsTo(db.tumor_cases, {
|
||||
as: 'tumor_case',
|
||||
foreignKey: {
|
||||
name: 'tumor_caseId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
db.lab_orders.belongsTo(db.clinical_visits, {
|
||||
as: 'visit',
|
||||
foreignKey: {
|
||||
name: 'visitId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
db.lab_orders.belongsTo(db.users, {
|
||||
as: 'ordering_user',
|
||||
foreignKey: {
|
||||
name: 'ordering_userId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
db.lab_orders.belongsTo(db.users, {
|
||||
as: 'createdBy',
|
||||
});
|
||||
|
||||
db.lab_orders.belongsTo(db.users, {
|
||||
as: 'updatedBy',
|
||||
});
|
||||
};
|
||||
|
||||
|
||||
|
||||
return lab_orders;
|
||||
};
|
||||
|
||||
|
||||
148
backend/src/db/models/lab_result_items.js
Normal file
148
backend/src/db/models/lab_result_items.js
Normal file
@ -0,0 +1,148 @@
|
||||
const config = require('../../config');
|
||||
const providers = config.providers;
|
||||
const crypto = require('crypto');
|
||||
const bcrypt = require('bcrypt');
|
||||
const moment = require('moment');
|
||||
|
||||
module.exports = function(sequelize, DataTypes) {
|
||||
const lab_result_items = sequelize.define(
|
||||
'lab_result_items',
|
||||
{
|
||||
id: {
|
||||
type: DataTypes.UUID,
|
||||
defaultValue: DataTypes.UUIDV4,
|
||||
primaryKey: true,
|
||||
},
|
||||
|
||||
test_name: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
value_text: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
value_numeric: {
|
||||
type: DataTypes.DECIMAL,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
unit: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
reference_range: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
flag: {
|
||||
type: DataTypes.ENUM,
|
||||
|
||||
|
||||
|
||||
values: [
|
||||
|
||||
"normal",
|
||||
|
||||
|
||||
"low",
|
||||
|
||||
|
||||
"high",
|
||||
|
||||
|
||||
"critical",
|
||||
|
||||
|
||||
"abnormal"
|
||||
|
||||
],
|
||||
|
||||
},
|
||||
|
||||
importHash: {
|
||||
type: DataTypes.STRING(255),
|
||||
allowNull: true,
|
||||
unique: true,
|
||||
},
|
||||
},
|
||||
{
|
||||
timestamps: true,
|
||||
paranoid: true,
|
||||
freezeTableName: true,
|
||||
},
|
||||
);
|
||||
|
||||
lab_result_items.associate = (db) => {
|
||||
|
||||
|
||||
/// loop through entities and it's fields, and if ref === current e[name] and create relation has many on parent entity
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
//end loop
|
||||
|
||||
|
||||
|
||||
db.lab_result_items.belongsTo(db.lab_results, {
|
||||
as: 'lab_result',
|
||||
foreignKey: {
|
||||
name: 'lab_resultId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
db.lab_result_items.belongsTo(db.users, {
|
||||
as: 'createdBy',
|
||||
});
|
||||
|
||||
db.lab_result_items.belongsTo(db.users, {
|
||||
as: 'updatedBy',
|
||||
});
|
||||
};
|
||||
|
||||
|
||||
|
||||
return lab_result_items;
|
||||
};
|
||||
|
||||
|
||||
146
backend/src/db/models/lab_results.js
Normal file
146
backend/src/db/models/lab_results.js
Normal file
@ -0,0 +1,146 @@
|
||||
const config = require('../../config');
|
||||
const providers = config.providers;
|
||||
const crypto = require('crypto');
|
||||
const bcrypt = require('bcrypt');
|
||||
const moment = require('moment');
|
||||
|
||||
module.exports = function(sequelize, DataTypes) {
|
||||
const lab_results = sequelize.define(
|
||||
'lab_results',
|
||||
{
|
||||
id: {
|
||||
type: DataTypes.UUID,
|
||||
defaultValue: DataTypes.UUIDV4,
|
||||
primaryKey: true,
|
||||
},
|
||||
|
||||
result_datetime: {
|
||||
type: DataTypes.DATE,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
panel_name: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
result_status: {
|
||||
type: DataTypes.ENUM,
|
||||
|
||||
|
||||
|
||||
values: [
|
||||
|
||||
"preliminary",
|
||||
|
||||
|
||||
"final",
|
||||
|
||||
|
||||
"amended"
|
||||
|
||||
],
|
||||
|
||||
},
|
||||
|
||||
summary: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
importHash: {
|
||||
type: DataTypes.STRING(255),
|
||||
allowNull: true,
|
||||
unique: true,
|
||||
},
|
||||
},
|
||||
{
|
||||
timestamps: true,
|
||||
paranoid: true,
|
||||
freezeTableName: true,
|
||||
},
|
||||
);
|
||||
|
||||
lab_results.associate = (db) => {
|
||||
|
||||
|
||||
/// loop through entities and it's fields, and if ref === current e[name] and create relation has many on parent entity
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
db.lab_results.hasMany(db.lab_result_items, {
|
||||
as: 'lab_result_items_lab_result',
|
||||
foreignKey: {
|
||||
name: 'lab_resultId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
//end loop
|
||||
|
||||
|
||||
|
||||
db.lab_results.belongsTo(db.lab_orders, {
|
||||
as: 'lab_order',
|
||||
foreignKey: {
|
||||
name: 'lab_orderId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
|
||||
db.lab_results.hasMany(db.file, {
|
||||
as: 'report_file',
|
||||
foreignKey: 'belongsToId',
|
||||
constraints: false,
|
||||
scope: {
|
||||
belongsTo: db.lab_results.getTableName(),
|
||||
belongsToColumn: 'report_file',
|
||||
},
|
||||
});
|
||||
|
||||
|
||||
db.lab_results.belongsTo(db.users, {
|
||||
as: 'createdBy',
|
||||
});
|
||||
|
||||
db.lab_results.belongsTo(db.users, {
|
||||
as: 'updatedBy',
|
||||
});
|
||||
};
|
||||
|
||||
|
||||
|
||||
return lab_results;
|
||||
};
|
||||
|
||||
|
||||
150
backend/src/db/models/medication_administrations.js
Normal file
150
backend/src/db/models/medication_administrations.js
Normal file
@ -0,0 +1,150 @@
|
||||
const config = require('../../config');
|
||||
const providers = config.providers;
|
||||
const crypto = require('crypto');
|
||||
const bcrypt = require('bcrypt');
|
||||
const moment = require('moment');
|
||||
|
||||
module.exports = function(sequelize, DataTypes) {
|
||||
const medication_administrations = sequelize.define(
|
||||
'medication_administrations',
|
||||
{
|
||||
id: {
|
||||
type: DataTypes.UUID,
|
||||
defaultValue: DataTypes.UUIDV4,
|
||||
primaryKey: true,
|
||||
},
|
||||
|
||||
start_datetime: {
|
||||
type: DataTypes.DATE,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
end_datetime: {
|
||||
type: DataTypes.DATE,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
status: {
|
||||
type: DataTypes.ENUM,
|
||||
|
||||
|
||||
|
||||
values: [
|
||||
|
||||
"started",
|
||||
|
||||
|
||||
"paused",
|
||||
|
||||
|
||||
"completed",
|
||||
|
||||
|
||||
"stopped",
|
||||
|
||||
|
||||
"reaction"
|
||||
|
||||
],
|
||||
|
||||
},
|
||||
|
||||
remarks: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
importHash: {
|
||||
type: DataTypes.STRING(255),
|
||||
allowNull: true,
|
||||
unique: true,
|
||||
},
|
||||
},
|
||||
{
|
||||
timestamps: true,
|
||||
paranoid: true,
|
||||
freezeTableName: true,
|
||||
},
|
||||
);
|
||||
|
||||
medication_administrations.associate = (db) => {
|
||||
|
||||
|
||||
/// loop through entities and it's fields, and if ref === current e[name] and create relation has many on parent entity
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
//end loop
|
||||
|
||||
|
||||
|
||||
db.medication_administrations.belongsTo(db.patients, {
|
||||
as: 'patient',
|
||||
foreignKey: {
|
||||
name: 'patientId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
db.medication_administrations.belongsTo(db.chemotherapy_orders, {
|
||||
as: 'chemo_order',
|
||||
foreignKey: {
|
||||
name: 'chemo_orderId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
db.medication_administrations.belongsTo(db.users, {
|
||||
as: 'administered_by_user',
|
||||
foreignKey: {
|
||||
name: 'administered_by_userId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
db.medication_administrations.belongsTo(db.users, {
|
||||
as: 'createdBy',
|
||||
});
|
||||
|
||||
db.medication_administrations.belongsTo(db.users, {
|
||||
as: 'updatedBy',
|
||||
});
|
||||
};
|
||||
|
||||
|
||||
|
||||
return medication_administrations;
|
||||
};
|
||||
|
||||
|
||||
154
backend/src/db/models/patient_dossiers.js
Normal file
154
backend/src/db/models/patient_dossiers.js
Normal file
@ -0,0 +1,154 @@
|
||||
const config = require('../../config');
|
||||
const providers = config.providers;
|
||||
const crypto = require('crypto');
|
||||
const bcrypt = require('bcrypt');
|
||||
const moment = require('moment');
|
||||
|
||||
module.exports = function(sequelize, DataTypes) {
|
||||
const patient_dossiers = sequelize.define(
|
||||
'patient_dossiers',
|
||||
{
|
||||
id: {
|
||||
type: DataTypes.UUID,
|
||||
defaultValue: DataTypes.UUIDV4,
|
||||
primaryKey: true,
|
||||
},
|
||||
|
||||
chief_complaint: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
history_of_present_illness: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
past_medical_history: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
surgical_history: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
family_history: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
allergies: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
current_medications: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
last_updated_on: {
|
||||
type: DataTypes.DATE,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
importHash: {
|
||||
type: DataTypes.STRING(255),
|
||||
allowNull: true,
|
||||
unique: true,
|
||||
},
|
||||
},
|
||||
{
|
||||
timestamps: true,
|
||||
paranoid: true,
|
||||
freezeTableName: true,
|
||||
},
|
||||
);
|
||||
|
||||
patient_dossiers.associate = (db) => {
|
||||
|
||||
|
||||
/// loop through entities and it's fields, and if ref === current e[name] and create relation has many on parent entity
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
//end loop
|
||||
|
||||
|
||||
|
||||
db.patient_dossiers.belongsTo(db.patients, {
|
||||
as: 'patient',
|
||||
foreignKey: {
|
||||
name: 'patientId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
|
||||
db.patient_dossiers.hasMany(db.file, {
|
||||
as: 'documents',
|
||||
foreignKey: 'belongsToId',
|
||||
constraints: false,
|
||||
scope: {
|
||||
belongsTo: db.patient_dossiers.getTableName(),
|
||||
belongsToColumn: 'documents',
|
||||
},
|
||||
});
|
||||
|
||||
|
||||
db.patient_dossiers.belongsTo(db.users, {
|
||||
as: 'createdBy',
|
||||
});
|
||||
|
||||
db.patient_dossiers.belongsTo(db.users, {
|
||||
as: 'updatedBy',
|
||||
});
|
||||
};
|
||||
|
||||
|
||||
|
||||
return patient_dossiers;
|
||||
};
|
||||
|
||||
|
||||
274
backend/src/db/models/patients.js
Normal file
274
backend/src/db/models/patients.js
Normal file
@ -0,0 +1,274 @@
|
||||
const config = require('../../config');
|
||||
const providers = config.providers;
|
||||
const crypto = require('crypto');
|
||||
const bcrypt = require('bcrypt');
|
||||
const moment = require('moment');
|
||||
|
||||
module.exports = function(sequelize, DataTypes) {
|
||||
const patients = sequelize.define(
|
||||
'patients',
|
||||
{
|
||||
id: {
|
||||
type: DataTypes.UUID,
|
||||
defaultValue: DataTypes.UUIDV4,
|
||||
primaryKey: true,
|
||||
},
|
||||
|
||||
medical_record_number: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
national_id: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
full_name: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
date_of_birth: {
|
||||
type: DataTypes.DATE,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
sex: {
|
||||
type: DataTypes.ENUM,
|
||||
|
||||
|
||||
|
||||
values: [
|
||||
|
||||
"male",
|
||||
|
||||
|
||||
"female",
|
||||
|
||||
|
||||
"other"
|
||||
|
||||
],
|
||||
|
||||
},
|
||||
|
||||
phone: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
address: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
emergency_contact_name: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
emergency_contact_phone: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
status: {
|
||||
type: DataTypes.ENUM,
|
||||
|
||||
|
||||
|
||||
values: [
|
||||
|
||||
"active",
|
||||
|
||||
|
||||
"inactive",
|
||||
|
||||
|
||||
"deceased",
|
||||
|
||||
|
||||
"transferred"
|
||||
|
||||
],
|
||||
|
||||
},
|
||||
|
||||
registration_date: {
|
||||
type: DataTypes.DATE,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
importHash: {
|
||||
type: DataTypes.STRING(255),
|
||||
allowNull: true,
|
||||
unique: true,
|
||||
},
|
||||
},
|
||||
{
|
||||
timestamps: true,
|
||||
paranoid: true,
|
||||
freezeTableName: true,
|
||||
},
|
||||
);
|
||||
|
||||
patients.associate = (db) => {
|
||||
|
||||
|
||||
/// loop through entities and it's fields, and if ref === current e[name] and create relation has many on parent entity
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
db.patients.hasMany(db.patient_dossiers, {
|
||||
as: 'patient_dossiers_patient',
|
||||
foreignKey: {
|
||||
name: 'patientId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
db.patients.hasMany(db.tumor_cases, {
|
||||
as: 'tumor_cases_patient',
|
||||
foreignKey: {
|
||||
name: 'patientId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
db.patients.hasMany(db.appointments, {
|
||||
as: 'appointments_patient',
|
||||
foreignKey: {
|
||||
name: 'patientId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
db.patients.hasMany(db.clinical_visits, {
|
||||
as: 'clinical_visits_patient',
|
||||
foreignKey: {
|
||||
name: 'patientId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
db.patients.hasMany(db.lab_orders, {
|
||||
as: 'lab_orders_patient',
|
||||
foreignKey: {
|
||||
name: 'patientId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
db.patients.hasMany(db.imaging_orders, {
|
||||
as: 'imaging_orders_patient',
|
||||
foreignKey: {
|
||||
name: 'patientId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
|
||||
db.patients.hasMany(db.adverse_events, {
|
||||
as: 'adverse_events_patient',
|
||||
foreignKey: {
|
||||
name: 'patientId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
db.patients.hasMany(db.medication_administrations, {
|
||||
as: 'medication_administrations_patient',
|
||||
foreignKey: {
|
||||
name: 'patientId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
db.patients.hasMany(db.task_notes, {
|
||||
as: 'task_notes_patient',
|
||||
foreignKey: {
|
||||
name: 'patientId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
|
||||
//end loop
|
||||
|
||||
|
||||
|
||||
db.patients.belongsTo(db.departments, {
|
||||
as: 'department',
|
||||
foreignKey: {
|
||||
name: 'departmentId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
|
||||
db.patients.hasMany(db.file, {
|
||||
as: 'photo',
|
||||
foreignKey: 'belongsToId',
|
||||
constraints: false,
|
||||
scope: {
|
||||
belongsTo: db.patients.getTableName(),
|
||||
belongsToColumn: 'photo',
|
||||
},
|
||||
});
|
||||
|
||||
|
||||
db.patients.belongsTo(db.users, {
|
||||
as: 'createdBy',
|
||||
});
|
||||
|
||||
db.patients.belongsTo(db.users, {
|
||||
as: 'updatedBy',
|
||||
});
|
||||
};
|
||||
|
||||
|
||||
|
||||
return patients;
|
||||
};
|
||||
|
||||
|
||||
87
backend/src/db/models/permissions.js
Normal file
87
backend/src/db/models/permissions.js
Normal file
@ -0,0 +1,87 @@
|
||||
const config = require('../../config');
|
||||
const providers = config.providers;
|
||||
const crypto = require('crypto');
|
||||
const bcrypt = require('bcrypt');
|
||||
const moment = require('moment');
|
||||
|
||||
module.exports = function(sequelize, DataTypes) {
|
||||
const permissions = sequelize.define(
|
||||
'permissions',
|
||||
{
|
||||
id: {
|
||||
type: DataTypes.UUID,
|
||||
defaultValue: DataTypes.UUIDV4,
|
||||
primaryKey: true,
|
||||
},
|
||||
|
||||
name: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
importHash: {
|
||||
type: DataTypes.STRING(255),
|
||||
allowNull: true,
|
||||
unique: true,
|
||||
},
|
||||
},
|
||||
{
|
||||
timestamps: true,
|
||||
paranoid: true,
|
||||
freezeTableName: true,
|
||||
},
|
||||
);
|
||||
|
||||
permissions.associate = (db) => {
|
||||
|
||||
|
||||
/// loop through entities and it's fields, and if ref === current e[name] and create relation has many on parent entity
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
//end loop
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
db.permissions.belongsTo(db.users, {
|
||||
as: 'createdBy',
|
||||
});
|
||||
|
||||
db.permissions.belongsTo(db.users, {
|
||||
as: 'updatedBy',
|
||||
});
|
||||
};
|
||||
|
||||
|
||||
|
||||
return permissions;
|
||||
};
|
||||
|
||||
|
||||
156
backend/src/db/models/radiotherapy_fractions.js
Normal file
156
backend/src/db/models/radiotherapy_fractions.js
Normal file
@ -0,0 +1,156 @@
|
||||
const config = require('../../config');
|
||||
const providers = config.providers;
|
||||
const crypto = require('crypto');
|
||||
const bcrypt = require('bcrypt');
|
||||
const moment = require('moment');
|
||||
|
||||
module.exports = function(sequelize, DataTypes) {
|
||||
const radiotherapy_fractions = sequelize.define(
|
||||
'radiotherapy_fractions',
|
||||
{
|
||||
id: {
|
||||
type: DataTypes.UUID,
|
||||
defaultValue: DataTypes.UUIDV4,
|
||||
primaryKey: true,
|
||||
},
|
||||
|
||||
fraction_number: {
|
||||
type: DataTypes.INTEGER,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
scheduled_datetime: {
|
||||
type: DataTypes.DATE,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
delivered_datetime: {
|
||||
type: DataTypes.DATE,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
delivered_dose_gy: {
|
||||
type: DataTypes.DECIMAL,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
status: {
|
||||
type: DataTypes.ENUM,
|
||||
|
||||
|
||||
|
||||
values: [
|
||||
|
||||
"scheduled",
|
||||
|
||||
|
||||
"delivered",
|
||||
|
||||
|
||||
"missed",
|
||||
|
||||
|
||||
"cancelled",
|
||||
|
||||
|
||||
"rescheduled"
|
||||
|
||||
],
|
||||
|
||||
},
|
||||
|
||||
notes: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
importHash: {
|
||||
type: DataTypes.STRING(255),
|
||||
allowNull: true,
|
||||
unique: true,
|
||||
},
|
||||
},
|
||||
{
|
||||
timestamps: true,
|
||||
paranoid: true,
|
||||
freezeTableName: true,
|
||||
},
|
||||
);
|
||||
|
||||
radiotherapy_fractions.associate = (db) => {
|
||||
|
||||
|
||||
/// loop through entities and it's fields, and if ref === current e[name] and create relation has many on parent entity
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
//end loop
|
||||
|
||||
|
||||
|
||||
db.radiotherapy_fractions.belongsTo(db.radiotherapy_plans, {
|
||||
as: 'radiotherapy_plan',
|
||||
foreignKey: {
|
||||
name: 'radiotherapy_planId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
db.radiotherapy_fractions.belongsTo(db.users, {
|
||||
as: 'therapist_user',
|
||||
foreignKey: {
|
||||
name: 'therapist_userId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
db.radiotherapy_fractions.belongsTo(db.users, {
|
||||
as: 'createdBy',
|
||||
});
|
||||
|
||||
db.radiotherapy_fractions.belongsTo(db.users, {
|
||||
as: 'updatedBy',
|
||||
});
|
||||
};
|
||||
|
||||
|
||||
|
||||
return radiotherapy_fractions;
|
||||
};
|
||||
|
||||
|
||||
216
backend/src/db/models/radiotherapy_plans.js
Normal file
216
backend/src/db/models/radiotherapy_plans.js
Normal file
@ -0,0 +1,216 @@
|
||||
const config = require('../../config');
|
||||
const providers = config.providers;
|
||||
const crypto = require('crypto');
|
||||
const bcrypt = require('bcrypt');
|
||||
const moment = require('moment');
|
||||
|
||||
module.exports = function(sequelize, DataTypes) {
|
||||
const radiotherapy_plans = sequelize.define(
|
||||
'radiotherapy_plans',
|
||||
{
|
||||
id: {
|
||||
type: DataTypes.UUID,
|
||||
defaultValue: DataTypes.UUIDV4,
|
||||
primaryKey: true,
|
||||
},
|
||||
|
||||
plan_name: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
site: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
total_dose_gy: {
|
||||
type: DataTypes.DECIMAL,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
fractions_planned: {
|
||||
type: DataTypes.INTEGER,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
dose_per_fraction_gy: {
|
||||
type: DataTypes.DECIMAL,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
planning_ct_date: {
|
||||
type: DataTypes.DATE,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
start_date: {
|
||||
type: DataTypes.DATE,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
end_date: {
|
||||
type: DataTypes.DATE,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
technique: {
|
||||
type: DataTypes.ENUM,
|
||||
|
||||
|
||||
|
||||
values: [
|
||||
|
||||
"3dcrt",
|
||||
|
||||
|
||||
"imrt",
|
||||
|
||||
|
||||
"vmat",
|
||||
|
||||
|
||||
"sbrt",
|
||||
|
||||
|
||||
"brachytherapy",
|
||||
|
||||
|
||||
"other"
|
||||
|
||||
],
|
||||
|
||||
},
|
||||
|
||||
status: {
|
||||
type: DataTypes.ENUM,
|
||||
|
||||
|
||||
|
||||
values: [
|
||||
|
||||
"planned",
|
||||
|
||||
|
||||
"approved",
|
||||
|
||||
|
||||
"active",
|
||||
|
||||
|
||||
"completed",
|
||||
|
||||
|
||||
"on_hold",
|
||||
|
||||
|
||||
"cancelled"
|
||||
|
||||
],
|
||||
|
||||
},
|
||||
|
||||
importHash: {
|
||||
type: DataTypes.STRING(255),
|
||||
allowNull: true,
|
||||
unique: true,
|
||||
},
|
||||
},
|
||||
{
|
||||
timestamps: true,
|
||||
paranoid: true,
|
||||
freezeTableName: true,
|
||||
},
|
||||
);
|
||||
|
||||
radiotherapy_plans.associate = (db) => {
|
||||
|
||||
|
||||
/// loop through entities and it's fields, and if ref === current e[name] and create relation has many on parent entity
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
db.radiotherapy_plans.hasMany(db.radiotherapy_fractions, {
|
||||
as: 'radiotherapy_fractions_radiotherapy_plan',
|
||||
foreignKey: {
|
||||
name: 'radiotherapy_planId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
//end loop
|
||||
|
||||
|
||||
|
||||
db.radiotherapy_plans.belongsTo(db.treatment_protocols, {
|
||||
as: 'protocol',
|
||||
foreignKey: {
|
||||
name: 'protocolId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
db.radiotherapy_plans.belongsTo(db.users, {
|
||||
as: 'radiation_oncologist',
|
||||
foreignKey: {
|
||||
name: 'radiation_oncologistId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
db.radiotherapy_plans.belongsTo(db.users, {
|
||||
as: 'createdBy',
|
||||
});
|
||||
|
||||
db.radiotherapy_plans.belongsTo(db.users, {
|
||||
as: 'updatedBy',
|
||||
});
|
||||
};
|
||||
|
||||
|
||||
|
||||
return radiotherapy_plans;
|
||||
};
|
||||
|
||||
|
||||
120
backend/src/db/models/roles.js
Normal file
120
backend/src/db/models/roles.js
Normal file
@ -0,0 +1,120 @@
|
||||
const config = require('../../config');
|
||||
const providers = config.providers;
|
||||
const crypto = require('crypto');
|
||||
const bcrypt = require('bcrypt');
|
||||
const moment = require('moment');
|
||||
|
||||
module.exports = function(sequelize, DataTypes) {
|
||||
const roles = sequelize.define(
|
||||
'roles',
|
||||
{
|
||||
id: {
|
||||
type: DataTypes.UUID,
|
||||
defaultValue: DataTypes.UUIDV4,
|
||||
primaryKey: true,
|
||||
},
|
||||
|
||||
name: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
role_customization: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
importHash: {
|
||||
type: DataTypes.STRING(255),
|
||||
allowNull: true,
|
||||
unique: true,
|
||||
},
|
||||
},
|
||||
{
|
||||
timestamps: true,
|
||||
paranoid: true,
|
||||
freezeTableName: true,
|
||||
},
|
||||
);
|
||||
|
||||
roles.associate = (db) => {
|
||||
|
||||
db.roles.belongsToMany(db.permissions, {
|
||||
as: 'permissions',
|
||||
foreignKey: {
|
||||
name: 'roles_permissionsId',
|
||||
},
|
||||
constraints: false,
|
||||
through: 'rolesPermissionsPermissions',
|
||||
});
|
||||
|
||||
db.roles.belongsToMany(db.permissions, {
|
||||
as: 'permissions_filter',
|
||||
foreignKey: {
|
||||
name: 'roles_permissionsId',
|
||||
},
|
||||
constraints: false,
|
||||
through: 'rolesPermissionsPermissions',
|
||||
});
|
||||
|
||||
|
||||
/// loop through entities and it's fields, and if ref === current e[name] and create relation has many on parent entity
|
||||
|
||||
|
||||
db.roles.hasMany(db.users, {
|
||||
as: 'users_app_role',
|
||||
foreignKey: {
|
||||
name: 'app_roleId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
//end loop
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
db.roles.belongsTo(db.users, {
|
||||
as: 'createdBy',
|
||||
});
|
||||
|
||||
db.roles.belongsTo(db.users, {
|
||||
as: 'updatedBy',
|
||||
});
|
||||
};
|
||||
|
||||
|
||||
|
||||
return roles;
|
||||
};
|
||||
|
||||
|
||||
207
backend/src/db/models/task_notes.js
Normal file
207
backend/src/db/models/task_notes.js
Normal file
@ -0,0 +1,207 @@
|
||||
const config = require('../../config');
|
||||
const providers = config.providers;
|
||||
const crypto = require('crypto');
|
||||
const bcrypt = require('bcrypt');
|
||||
const moment = require('moment');
|
||||
|
||||
module.exports = function(sequelize, DataTypes) {
|
||||
const task_notes = sequelize.define(
|
||||
'task_notes',
|
||||
{
|
||||
id: {
|
||||
type: DataTypes.UUID,
|
||||
defaultValue: DataTypes.UUIDV4,
|
||||
primaryKey: true,
|
||||
},
|
||||
|
||||
type: {
|
||||
type: DataTypes.ENUM,
|
||||
|
||||
|
||||
|
||||
values: [
|
||||
|
||||
"administrative",
|
||||
|
||||
|
||||
"clinical",
|
||||
|
||||
|
||||
"nursing",
|
||||
|
||||
|
||||
"pharmacy",
|
||||
|
||||
|
||||
"lab",
|
||||
|
||||
|
||||
"radiology",
|
||||
|
||||
|
||||
"other"
|
||||
|
||||
],
|
||||
|
||||
},
|
||||
|
||||
priority: {
|
||||
type: DataTypes.ENUM,
|
||||
|
||||
|
||||
|
||||
values: [
|
||||
|
||||
"low",
|
||||
|
||||
|
||||
"medium",
|
||||
|
||||
|
||||
"high"
|
||||
|
||||
],
|
||||
|
||||
},
|
||||
|
||||
status: {
|
||||
type: DataTypes.ENUM,
|
||||
|
||||
|
||||
|
||||
values: [
|
||||
|
||||
"open",
|
||||
|
||||
|
||||
"in_progress",
|
||||
|
||||
|
||||
"done",
|
||||
|
||||
|
||||
"cancelled"
|
||||
|
||||
],
|
||||
|
||||
},
|
||||
|
||||
due_datetime: {
|
||||
type: DataTypes.DATE,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
title_text: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
details: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
importHash: {
|
||||
type: DataTypes.STRING(255),
|
||||
allowNull: true,
|
||||
unique: true,
|
||||
},
|
||||
},
|
||||
{
|
||||
timestamps: true,
|
||||
paranoid: true,
|
||||
freezeTableName: true,
|
||||
},
|
||||
);
|
||||
|
||||
task_notes.associate = (db) => {
|
||||
|
||||
|
||||
/// loop through entities and it's fields, and if ref === current e[name] and create relation has many on parent entity
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
//end loop
|
||||
|
||||
|
||||
|
||||
db.task_notes.belongsTo(db.patients, {
|
||||
as: 'patient',
|
||||
foreignKey: {
|
||||
name: 'patientId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
db.task_notes.belongsTo(db.tumor_cases, {
|
||||
as: 'tumor_case',
|
||||
foreignKey: {
|
||||
name: 'tumor_caseId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
db.task_notes.belongsTo(db.users, {
|
||||
as: 'assigned_user',
|
||||
foreignKey: {
|
||||
name: 'assigned_userId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
|
||||
db.task_notes.hasMany(db.file, {
|
||||
as: 'attachments',
|
||||
foreignKey: 'belongsToId',
|
||||
constraints: false,
|
||||
scope: {
|
||||
belongsTo: db.task_notes.getTableName(),
|
||||
belongsToColumn: 'attachments',
|
||||
},
|
||||
});
|
||||
|
||||
|
||||
db.task_notes.belongsTo(db.users, {
|
||||
as: 'createdBy',
|
||||
});
|
||||
|
||||
db.task_notes.belongsTo(db.users, {
|
||||
as: 'updatedBy',
|
||||
});
|
||||
};
|
||||
|
||||
|
||||
|
||||
return task_notes;
|
||||
};
|
||||
|
||||
|
||||
218
backend/src/db/models/treatment_protocols.js
Normal file
218
backend/src/db/models/treatment_protocols.js
Normal file
@ -0,0 +1,218 @@
|
||||
const config = require('../../config');
|
||||
const providers = config.providers;
|
||||
const crypto = require('crypto');
|
||||
const bcrypt = require('bcrypt');
|
||||
const moment = require('moment');
|
||||
|
||||
module.exports = function(sequelize, DataTypes) {
|
||||
const treatment_protocols = sequelize.define(
|
||||
'treatment_protocols',
|
||||
{
|
||||
id: {
|
||||
type: DataTypes.UUID,
|
||||
defaultValue: DataTypes.UUIDV4,
|
||||
primaryKey: true,
|
||||
},
|
||||
|
||||
protocol_type: {
|
||||
type: DataTypes.ENUM,
|
||||
|
||||
|
||||
|
||||
values: [
|
||||
|
||||
"chemotherapy",
|
||||
|
||||
|
||||
"radiotherapy",
|
||||
|
||||
|
||||
"combined",
|
||||
|
||||
|
||||
"immunotherapy",
|
||||
|
||||
|
||||
"hormonal",
|
||||
|
||||
|
||||
"targeted",
|
||||
|
||||
|
||||
"supportive"
|
||||
|
||||
],
|
||||
|
||||
},
|
||||
|
||||
name: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
description: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
planned_cycles: {
|
||||
type: DataTypes.INTEGER,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
cycle_length_days: {
|
||||
type: DataTypes.INTEGER,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
start_date: {
|
||||
type: DataTypes.DATE,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
end_date: {
|
||||
type: DataTypes.DATE,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
status: {
|
||||
type: DataTypes.ENUM,
|
||||
|
||||
|
||||
|
||||
values: [
|
||||
|
||||
"planned",
|
||||
|
||||
|
||||
"active",
|
||||
|
||||
|
||||
"completed",
|
||||
|
||||
|
||||
"on_hold",
|
||||
|
||||
|
||||
"cancelled"
|
||||
|
||||
],
|
||||
|
||||
},
|
||||
|
||||
importHash: {
|
||||
type: DataTypes.STRING(255),
|
||||
allowNull: true,
|
||||
unique: true,
|
||||
},
|
||||
},
|
||||
{
|
||||
timestamps: true,
|
||||
paranoid: true,
|
||||
freezeTableName: true,
|
||||
},
|
||||
);
|
||||
|
||||
treatment_protocols.associate = (db) => {
|
||||
|
||||
|
||||
/// loop through entities and it's fields, and if ref === current e[name] and create relation has many on parent entity
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
db.treatment_protocols.hasMany(db.chemotherapy_orders, {
|
||||
as: 'chemotherapy_orders_protocol',
|
||||
foreignKey: {
|
||||
name: 'protocolId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
|
||||
db.treatment_protocols.hasMany(db.radiotherapy_plans, {
|
||||
as: 'radiotherapy_plans_protocol',
|
||||
foreignKey: {
|
||||
name: 'protocolId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
db.treatment_protocols.hasMany(db.adverse_events, {
|
||||
as: 'adverse_events_protocol',
|
||||
foreignKey: {
|
||||
name: 'protocolId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
//end loop
|
||||
|
||||
|
||||
|
||||
db.treatment_protocols.belongsTo(db.tumor_cases, {
|
||||
as: 'tumor_case',
|
||||
foreignKey: {
|
||||
name: 'tumor_caseId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
db.treatment_protocols.belongsTo(db.users, {
|
||||
as: 'prescribing_user',
|
||||
foreignKey: {
|
||||
name: 'prescribing_userId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
db.treatment_protocols.belongsTo(db.users, {
|
||||
as: 'createdBy',
|
||||
});
|
||||
|
||||
db.treatment_protocols.belongsTo(db.users, {
|
||||
as: 'updatedBy',
|
||||
});
|
||||
};
|
||||
|
||||
|
||||
|
||||
return treatment_protocols;
|
||||
};
|
||||
|
||||
|
||||
318
backend/src/db/models/tumor_cases.js
Normal file
318
backend/src/db/models/tumor_cases.js
Normal file
@ -0,0 +1,318 @@
|
||||
const config = require('../../config');
|
||||
const providers = config.providers;
|
||||
const crypto = require('crypto');
|
||||
const bcrypt = require('bcrypt');
|
||||
const moment = require('moment');
|
||||
|
||||
module.exports = function(sequelize, DataTypes) {
|
||||
const tumor_cases = sequelize.define(
|
||||
'tumor_cases',
|
||||
{
|
||||
id: {
|
||||
type: DataTypes.UUID,
|
||||
defaultValue: DataTypes.UUIDV4,
|
||||
primaryKey: true,
|
||||
},
|
||||
|
||||
case_number: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
cancer_type: {
|
||||
type: DataTypes.ENUM,
|
||||
|
||||
|
||||
|
||||
values: [
|
||||
|
||||
"breast",
|
||||
|
||||
|
||||
"lung",
|
||||
|
||||
|
||||
"colorectal",
|
||||
|
||||
|
||||
"prostate",
|
||||
|
||||
|
||||
"cervical",
|
||||
|
||||
|
||||
"ovarian",
|
||||
|
||||
|
||||
"lymphoma",
|
||||
|
||||
|
||||
"leukemia",
|
||||
|
||||
|
||||
"head_and_neck",
|
||||
|
||||
|
||||
"skin",
|
||||
|
||||
|
||||
"gastric",
|
||||
|
||||
|
||||
"pancreatic",
|
||||
|
||||
|
||||
"liver",
|
||||
|
||||
|
||||
"brain",
|
||||
|
||||
|
||||
"other"
|
||||
|
||||
],
|
||||
|
||||
},
|
||||
|
||||
primary_site: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
histology: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
biomarkers: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
stage_system: {
|
||||
type: DataTypes.ENUM,
|
||||
|
||||
|
||||
|
||||
values: [
|
||||
|
||||
"tnm",
|
||||
|
||||
|
||||
"ann_arbor",
|
||||
|
||||
|
||||
"figo",
|
||||
|
||||
|
||||
"other"
|
||||
|
||||
],
|
||||
|
||||
},
|
||||
|
||||
stage: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
diagnosis_date: {
|
||||
type: DataTypes.DATE,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
intent: {
|
||||
type: DataTypes.ENUM,
|
||||
|
||||
|
||||
|
||||
values: [
|
||||
|
||||
"curative",
|
||||
|
||||
|
||||
"adjuvant",
|
||||
|
||||
|
||||
"neoadjuvant",
|
||||
|
||||
|
||||
"palliative",
|
||||
|
||||
|
||||
"supportive"
|
||||
|
||||
],
|
||||
|
||||
},
|
||||
|
||||
status: {
|
||||
type: DataTypes.ENUM,
|
||||
|
||||
|
||||
|
||||
values: [
|
||||
|
||||
"new",
|
||||
|
||||
|
||||
"on_treatment",
|
||||
|
||||
|
||||
"follow_up",
|
||||
|
||||
|
||||
"closed"
|
||||
|
||||
],
|
||||
|
||||
},
|
||||
|
||||
importHash: {
|
||||
type: DataTypes.STRING(255),
|
||||
allowNull: true,
|
||||
unique: true,
|
||||
},
|
||||
},
|
||||
{
|
||||
timestamps: true,
|
||||
paranoid: true,
|
||||
freezeTableName: true,
|
||||
},
|
||||
);
|
||||
|
||||
tumor_cases.associate = (db) => {
|
||||
|
||||
|
||||
/// loop through entities and it's fields, and if ref === current e[name] and create relation has many on parent entity
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
db.tumor_cases.hasMany(db.treatment_protocols, {
|
||||
as: 'treatment_protocols_tumor_case',
|
||||
foreignKey: {
|
||||
name: 'tumor_caseId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
db.tumor_cases.hasMany(db.appointments, {
|
||||
as: 'appointments_tumor_case',
|
||||
foreignKey: {
|
||||
name: 'tumor_caseId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
db.tumor_cases.hasMany(db.clinical_visits, {
|
||||
as: 'clinical_visits_tumor_case',
|
||||
foreignKey: {
|
||||
name: 'tumor_caseId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
db.tumor_cases.hasMany(db.lab_orders, {
|
||||
as: 'lab_orders_tumor_case',
|
||||
foreignKey: {
|
||||
name: 'tumor_caseId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
db.tumor_cases.hasMany(db.imaging_orders, {
|
||||
as: 'imaging_orders_tumor_case',
|
||||
foreignKey: {
|
||||
name: 'tumor_caseId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
|
||||
db.tumor_cases.hasMany(db.adverse_events, {
|
||||
as: 'adverse_events_tumor_case',
|
||||
foreignKey: {
|
||||
name: 'tumor_caseId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
|
||||
db.tumor_cases.hasMany(db.task_notes, {
|
||||
as: 'task_notes_tumor_case',
|
||||
foreignKey: {
|
||||
name: 'tumor_caseId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
|
||||
//end loop
|
||||
|
||||
|
||||
|
||||
db.tumor_cases.belongsTo(db.patients, {
|
||||
as: 'patient',
|
||||
foreignKey: {
|
||||
name: 'patientId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
db.tumor_cases.belongsTo(db.users, {
|
||||
as: 'primary_oncologist',
|
||||
foreignKey: {
|
||||
name: 'primary_oncologistId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
db.tumor_cases.belongsTo(db.users, {
|
||||
as: 'createdBy',
|
||||
});
|
||||
|
||||
db.tumor_cases.belongsTo(db.users, {
|
||||
as: 'updatedBy',
|
||||
});
|
||||
};
|
||||
|
||||
|
||||
|
||||
return tumor_cases;
|
||||
};
|
||||
|
||||
|
||||
349
backend/src/db/models/users.js
Normal file
349
backend/src/db/models/users.js
Normal file
@ -0,0 +1,349 @@
|
||||
const config = require('../../config');
|
||||
const providers = config.providers;
|
||||
const crypto = require('crypto');
|
||||
const bcrypt = require('bcrypt');
|
||||
const moment = require('moment');
|
||||
|
||||
module.exports = function(sequelize, DataTypes) {
|
||||
const users = sequelize.define(
|
||||
'users',
|
||||
{
|
||||
id: {
|
||||
type: DataTypes.UUID,
|
||||
defaultValue: DataTypes.UUIDV4,
|
||||
primaryKey: true,
|
||||
},
|
||||
|
||||
firstName: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
lastName: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
phoneNumber: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
email: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
disabled: {
|
||||
type: DataTypes.BOOLEAN,
|
||||
|
||||
allowNull: false,
|
||||
defaultValue: false,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
password: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
emailVerified: {
|
||||
type: DataTypes.BOOLEAN,
|
||||
|
||||
allowNull: false,
|
||||
defaultValue: false,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
emailVerificationToken: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
emailVerificationTokenExpiresAt: {
|
||||
type: DataTypes.DATE,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
passwordResetToken: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
passwordResetTokenExpiresAt: {
|
||||
type: DataTypes.DATE,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
provider: {
|
||||
type: DataTypes.TEXT,
|
||||
|
||||
|
||||
|
||||
},
|
||||
|
||||
importHash: {
|
||||
type: DataTypes.STRING(255),
|
||||
allowNull: true,
|
||||
unique: true,
|
||||
},
|
||||
},
|
||||
{
|
||||
timestamps: true,
|
||||
paranoid: true,
|
||||
freezeTableName: true,
|
||||
},
|
||||
);
|
||||
|
||||
users.associate = (db) => {
|
||||
|
||||
db.users.belongsToMany(db.permissions, {
|
||||
as: 'custom_permissions',
|
||||
foreignKey: {
|
||||
name: 'users_custom_permissionsId',
|
||||
},
|
||||
constraints: false,
|
||||
through: 'usersCustom_permissionsPermissions',
|
||||
});
|
||||
|
||||
db.users.belongsToMany(db.permissions, {
|
||||
as: 'custom_permissions_filter',
|
||||
foreignKey: {
|
||||
name: 'users_custom_permissionsId',
|
||||
},
|
||||
constraints: false,
|
||||
through: 'usersCustom_permissionsPermissions',
|
||||
});
|
||||
|
||||
|
||||
/// loop through entities and it's fields, and if ref === current e[name] and create relation has many on parent entity
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
db.users.hasMany(db.departments, {
|
||||
as: 'departments_head_user',
|
||||
foreignKey: {
|
||||
name: 'head_userId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
db.users.hasMany(db.tumor_cases, {
|
||||
as: 'tumor_cases_primary_oncologist',
|
||||
foreignKey: {
|
||||
name: 'primary_oncologistId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
db.users.hasMany(db.treatment_protocols, {
|
||||
as: 'treatment_protocols_prescribing_user',
|
||||
foreignKey: {
|
||||
name: 'prescribing_userId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
db.users.hasMany(db.chemotherapy_orders, {
|
||||
as: 'chemotherapy_orders_responsible_nurse',
|
||||
foreignKey: {
|
||||
name: 'responsible_nurseId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
|
||||
db.users.hasMany(db.radiotherapy_plans, {
|
||||
as: 'radiotherapy_plans_radiation_oncologist',
|
||||
foreignKey: {
|
||||
name: 'radiation_oncologistId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
db.users.hasMany(db.radiotherapy_fractions, {
|
||||
as: 'radiotherapy_fractions_therapist_user',
|
||||
foreignKey: {
|
||||
name: 'therapist_userId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
db.users.hasMany(db.appointments, {
|
||||
as: 'appointments_assigned_user',
|
||||
foreignKey: {
|
||||
name: 'assigned_userId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
db.users.hasMany(db.clinical_visits, {
|
||||
as: 'clinical_visits_provider_user',
|
||||
foreignKey: {
|
||||
name: 'provider_userId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
db.users.hasMany(db.lab_orders, {
|
||||
as: 'lab_orders_ordering_user',
|
||||
foreignKey: {
|
||||
name: 'ordering_userId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
|
||||
|
||||
db.users.hasMany(db.imaging_orders, {
|
||||
as: 'imaging_orders_ordering_user',
|
||||
foreignKey: {
|
||||
name: 'ordering_userId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
db.users.hasMany(db.imaging_reports, {
|
||||
as: 'imaging_reports_radiologist_user',
|
||||
foreignKey: {
|
||||
name: 'radiologist_userId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
|
||||
db.users.hasMany(db.medication_administrations, {
|
||||
as: 'medication_administrations_administered_by_user',
|
||||
foreignKey: {
|
||||
name: 'administered_by_userId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
db.users.hasMany(db.task_notes, {
|
||||
as: 'task_notes_assigned_user',
|
||||
foreignKey: {
|
||||
name: 'assigned_userId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
|
||||
//end loop
|
||||
|
||||
|
||||
|
||||
db.users.belongsTo(db.roles, {
|
||||
as: 'app_role',
|
||||
foreignKey: {
|
||||
name: 'app_roleId',
|
||||
},
|
||||
constraints: false,
|
||||
});
|
||||
|
||||
|
||||
|
||||
db.users.hasMany(db.file, {
|
||||
as: 'avatar',
|
||||
foreignKey: 'belongsToId',
|
||||
constraints: false,
|
||||
scope: {
|
||||
belongsTo: db.users.getTableName(),
|
||||
belongsToColumn: 'avatar',
|
||||
},
|
||||
});
|
||||
|
||||
|
||||
db.users.belongsTo(db.users, {
|
||||
as: 'createdBy',
|
||||
});
|
||||
|
||||
db.users.belongsTo(db.users, {
|
||||
as: 'updatedBy',
|
||||
});
|
||||
};
|
||||
|
||||
|
||||
users.beforeCreate((users, options) => {
|
||||
users = trimStringFields(users);
|
||||
|
||||
if (users.provider !== providers.LOCAL && Object.values(providers).indexOf(users.provider) > -1) {
|
||||
users.emailVerified = true;
|
||||
|
||||
if (!users.password) {
|
||||
const password = crypto
|
||||
.randomBytes(20)
|
||||
.toString('hex');
|
||||
|
||||
const hashedPassword = bcrypt.hashSync(
|
||||
password,
|
||||
config.bcrypt.saltRounds,
|
||||
);
|
||||
|
||||
users.password = hashedPassword
|
||||
}
|
||||
}
|
||||
});
|
||||
|
||||
users.beforeUpdate((users, options) => {
|
||||
users = trimStringFields(users);
|
||||
});
|
||||
|
||||
|
||||
return users;
|
||||
};
|
||||
|
||||
|
||||
function trimStringFields(users) {
|
||||
users.email = users.email.trim();
|
||||
|
||||
users.firstName = users.firstName
|
||||
? users.firstName.trim()
|
||||
: null;
|
||||
|
||||
users.lastName = users.lastName
|
||||
? users.lastName.trim()
|
||||
: null;
|
||||
|
||||
return users;
|
||||
}
|
||||
|
||||
16
backend/src/db/reset.js
Normal file
16
backend/src/db/reset.js
Normal file
@ -0,0 +1,16 @@
|
||||
const db = require('./models');
|
||||
const {execSync} = require("child_process");
|
||||
|
||||
console.log('Resetting Database');
|
||||
|
||||
db.sequelize
|
||||
.sync({ force: true })
|
||||
.then(() => {
|
||||
execSync("sequelize db:seed:all");
|
||||
console.log('OK');
|
||||
process.exit();
|
||||
})
|
||||
.catch((error) => {
|
||||
console.error(error);
|
||||
process.exit(1);
|
||||
});
|
||||
66
backend/src/db/seeders/20200430130759-admin-user.js
Normal file
66
backend/src/db/seeders/20200430130759-admin-user.js
Normal file
@ -0,0 +1,66 @@
|
||||
'use strict';
|
||||
const bcrypt = require("bcrypt");
|
||||
const config = require("../../config");
|
||||
|
||||
const ids = [
|
||||
'193bf4b5-9f07-4bd5-9a43-e7e41f3e96af',
|
||||
'af5a87be-8f9c-4630-902a-37a60b7005ba',
|
||||
'5bc531ab-611f-41f3-9373-b7cc5d09c93d',
|
||||
]
|
||||
|
||||
module.exports = {
|
||||
up: async (queryInterface, Sequelize) => {
|
||||
let admin_hash = bcrypt.hashSync(config.admin_pass, config.bcrypt.saltRounds);
|
||||
let user_hash = bcrypt.hashSync(config.user_pass, config.bcrypt.saltRounds);
|
||||
|
||||
try {
|
||||
await queryInterface.bulkInsert('users', [
|
||||
{
|
||||
id: ids[0],
|
||||
firstName: 'Admin',
|
||||
email: config.admin_email,
|
||||
emailVerified: true,
|
||||
provider: config.providers.LOCAL,
|
||||
password: admin_hash,
|
||||
createdAt: new Date(),
|
||||
updatedAt: new Date()
|
||||
},
|
||||
{
|
||||
id: ids[1],
|
||||
firstName: 'John',
|
||||
email: 'john@doe.com',
|
||||
emailVerified: true,
|
||||
provider: config.providers.LOCAL,
|
||||
password: user_hash,
|
||||
createdAt: new Date(),
|
||||
updatedAt: new Date()
|
||||
},
|
||||
{
|
||||
id: ids[2],
|
||||
firstName: 'Client',
|
||||
email: 'client@hello.com',
|
||||
emailVerified: true,
|
||||
provider: config.providers.LOCAL,
|
||||
password: user_hash,
|
||||
createdAt: new Date(),
|
||||
updatedAt: new Date()
|
||||
},
|
||||
]);
|
||||
} catch (error) {
|
||||
console.error('Error during bulkInsert:', error);
|
||||
throw error;
|
||||
}
|
||||
},
|
||||
down: async (queryInterface, Sequelize) => {
|
||||
try {
|
||||
await queryInterface.bulkDelete('users', {
|
||||
id: {
|
||||
[Sequelize.Op.in]: ids,
|
||||
},
|
||||
}, {});
|
||||
} catch (error) {
|
||||
console.error('Error during bulkDelete:', error);
|
||||
throw error;
|
||||
}
|
||||
}
|
||||
}
|
||||
1926
backend/src/db/seeders/20200430130760-user-roles.js
Normal file
1926
backend/src/db/seeders/20200430130760-user-roles.js
Normal file
File diff suppressed because it is too large
Load Diff
11209
backend/src/db/seeders/20231127130745-sample-data.js
Normal file
11209
backend/src/db/seeders/20231127130745-sample-data.js
Normal file
File diff suppressed because it is too large
Load Diff
27
backend/src/db/utils.js
Normal file
27
backend/src/db/utils.js
Normal file
@ -0,0 +1,27 @@
|
||||
const validator = require('validator');
|
||||
const { v4: uuid } = require('uuid');
|
||||
const Sequelize = require('./models').Sequelize;
|
||||
|
||||
module.exports = class Utils {
|
||||
static uuid(value) {
|
||||
let id = value;
|
||||
|
||||
if (!validator.isUUID(id)) {
|
||||
id = uuid();
|
||||
}
|
||||
|
||||
return id;
|
||||
}
|
||||
|
||||
static ilike(model, column, value) {
|
||||
return Sequelize.where(
|
||||
Sequelize.fn(
|
||||
'lower',
|
||||
Sequelize.col(`${model}.${column}`),
|
||||
),
|
||||
{
|
||||
[Sequelize.Op.like]: `%${value}%`.toLowerCase(),
|
||||
},
|
||||
);
|
||||
}
|
||||
};
|
||||
23
backend/src/helpers.js
Normal file
23
backend/src/helpers.js
Normal file
@ -0,0 +1,23 @@
|
||||
const jwt = require('jsonwebtoken');
|
||||
const config = require('./config');
|
||||
|
||||
module.exports = class Helpers {
|
||||
static wrapAsync(fn) {
|
||||
return function (req, res, next) {
|
||||
fn(req, res, next).catch(next);
|
||||
};
|
||||
}
|
||||
|
||||
static commonErrorHandler(error, req, res, next) {
|
||||
if ([400, 403, 404].includes(error.code)) {
|
||||
return res.status(error.code).send(error.message);
|
||||
}
|
||||
|
||||
console.error(error);
|
||||
return res.status(500).send(error.message);
|
||||
}
|
||||
|
||||
static jwtSign(data) {
|
||||
return jwt.sign(data, config.secret_key, {expiresIn: '6h'});
|
||||
};
|
||||
};
|
||||
214
backend/src/index.js
Normal file
214
backend/src/index.js
Normal file
@ -0,0 +1,214 @@
|
||||
|
||||
const express = require('express');
|
||||
const cors = require('cors');
|
||||
const app = express();
|
||||
const passport = require('passport');
|
||||
const path = require('path');
|
||||
const fs = require('fs');
|
||||
const bodyParser = require('body-parser');
|
||||
const db = require('./db/models');
|
||||
const config = require('./config');
|
||||
const swaggerUI = require('swagger-ui-express');
|
||||
const swaggerJsDoc = require('swagger-jsdoc');
|
||||
|
||||
const authRoutes = require('./routes/auth');
|
||||
const fileRoutes = require('./routes/file');
|
||||
const searchRoutes = require('./routes/search');
|
||||
const sqlRoutes = require('./routes/sql');
|
||||
const pexelsRoutes = require('./routes/pexels');
|
||||
|
||||
const openaiRoutes = require('./routes/openai');
|
||||
|
||||
|
||||
|
||||
const usersRoutes = require('./routes/users');
|
||||
|
||||
const rolesRoutes = require('./routes/roles');
|
||||
|
||||
const permissionsRoutes = require('./routes/permissions');
|
||||
|
||||
const departmentsRoutes = require('./routes/departments');
|
||||
|
||||
const patientsRoutes = require('./routes/patients');
|
||||
|
||||
const patient_dossiersRoutes = require('./routes/patient_dossiers');
|
||||
|
||||
const tumor_casesRoutes = require('./routes/tumor_cases');
|
||||
|
||||
const treatment_protocolsRoutes = require('./routes/treatment_protocols');
|
||||
|
||||
const chemotherapy_ordersRoutes = require('./routes/chemotherapy_orders');
|
||||
|
||||
const chemo_drug_itemsRoutes = require('./routes/chemo_drug_items');
|
||||
|
||||
const radiotherapy_plansRoutes = require('./routes/radiotherapy_plans');
|
||||
|
||||
const radiotherapy_fractionsRoutes = require('./routes/radiotherapy_fractions');
|
||||
|
||||
const appointmentsRoutes = require('./routes/appointments');
|
||||
|
||||
const clinical_visitsRoutes = require('./routes/clinical_visits');
|
||||
|
||||
const lab_ordersRoutes = require('./routes/lab_orders');
|
||||
|
||||
const lab_resultsRoutes = require('./routes/lab_results');
|
||||
|
||||
const lab_result_itemsRoutes = require('./routes/lab_result_items');
|
||||
|
||||
const imaging_ordersRoutes = require('./routes/imaging_orders');
|
||||
|
||||
const imaging_reportsRoutes = require('./routes/imaging_reports');
|
||||
|
||||
const adverse_eventsRoutes = require('./routes/adverse_events');
|
||||
|
||||
const medication_administrationsRoutes = require('./routes/medication_administrations');
|
||||
|
||||
const task_notesRoutes = require('./routes/task_notes');
|
||||
|
||||
|
||||
const getBaseUrl = (url) => {
|
||||
if (!url) return '';
|
||||
return url.endsWith('/api') ? url.slice(0, -4) : url;
|
||||
};
|
||||
|
||||
const options = {
|
||||
definition: {
|
||||
openapi: "3.0.0",
|
||||
info: {
|
||||
version: "1.0.0",
|
||||
title: "Oncology Service Manager",
|
||||
description: "Oncology Service Manager Online REST API for Testing and Prototyping application. You can perform all major operations with your entities - create, delete and etc.",
|
||||
},
|
||||
servers: [
|
||||
{
|
||||
url: getBaseUrl(process.env.NEXT_PUBLIC_BACK_API) || config.swaggerUrl,
|
||||
description: "Development server",
|
||||
}
|
||||
],
|
||||
components: {
|
||||
securitySchemes: {
|
||||
bearerAuth: {
|
||||
type: 'http',
|
||||
scheme: 'bearer',
|
||||
bearerFormat: 'JWT',
|
||||
}
|
||||
},
|
||||
responses: {
|
||||
UnauthorizedError: {
|
||||
description: "Access token is missing or invalid"
|
||||
}
|
||||
}
|
||||
},
|
||||
security: [{
|
||||
bearerAuth: []
|
||||
}]
|
||||
},
|
||||
apis: ["./src/routes/*.js"],
|
||||
};
|
||||
|
||||
const specs = swaggerJsDoc(options);
|
||||
app.use('/api-docs', function (req, res, next) {
|
||||
swaggerUI.host = getBaseUrl(process.env.NEXT_PUBLIC_BACK_API) || req.get('host');
|
||||
next()
|
||||
}, swaggerUI.serve, swaggerUI.setup(specs))
|
||||
|
||||
app.use(cors({origin: true}));
|
||||
require('./auth/auth');
|
||||
|
||||
app.use(bodyParser.json());
|
||||
|
||||
app.use('/api/auth', authRoutes);
|
||||
app.use('/api/file', fileRoutes);
|
||||
app.use('/api/pexels', pexelsRoutes);
|
||||
app.enable('trust proxy');
|
||||
|
||||
|
||||
app.use('/api/users', passport.authenticate('jwt', {session: false}), usersRoutes);
|
||||
|
||||
app.use('/api/roles', passport.authenticate('jwt', {session: false}), rolesRoutes);
|
||||
|
||||
app.use('/api/permissions', passport.authenticate('jwt', {session: false}), permissionsRoutes);
|
||||
|
||||
app.use('/api/departments', passport.authenticate('jwt', {session: false}), departmentsRoutes);
|
||||
|
||||
app.use('/api/patients', passport.authenticate('jwt', {session: false}), patientsRoutes);
|
||||
|
||||
app.use('/api/patient_dossiers', passport.authenticate('jwt', {session: false}), patient_dossiersRoutes);
|
||||
|
||||
app.use('/api/tumor_cases', passport.authenticate('jwt', {session: false}), tumor_casesRoutes);
|
||||
|
||||
app.use('/api/treatment_protocols', passport.authenticate('jwt', {session: false}), treatment_protocolsRoutes);
|
||||
|
||||
app.use('/api/chemotherapy_orders', passport.authenticate('jwt', {session: false}), chemotherapy_ordersRoutes);
|
||||
|
||||
app.use('/api/chemo_drug_items', passport.authenticate('jwt', {session: false}), chemo_drug_itemsRoutes);
|
||||
|
||||
app.use('/api/radiotherapy_plans', passport.authenticate('jwt', {session: false}), radiotherapy_plansRoutes);
|
||||
|
||||
app.use('/api/radiotherapy_fractions', passport.authenticate('jwt', {session: false}), radiotherapy_fractionsRoutes);
|
||||
|
||||
app.use('/api/appointments', passport.authenticate('jwt', {session: false}), appointmentsRoutes);
|
||||
|
||||
app.use('/api/clinical_visits', passport.authenticate('jwt', {session: false}), clinical_visitsRoutes);
|
||||
|
||||
app.use('/api/lab_orders', passport.authenticate('jwt', {session: false}), lab_ordersRoutes);
|
||||
|
||||
app.use('/api/lab_results', passport.authenticate('jwt', {session: false}), lab_resultsRoutes);
|
||||
|
||||
app.use('/api/lab_result_items', passport.authenticate('jwt', {session: false}), lab_result_itemsRoutes);
|
||||
|
||||
app.use('/api/imaging_orders', passport.authenticate('jwt', {session: false}), imaging_ordersRoutes);
|
||||
|
||||
app.use('/api/imaging_reports', passport.authenticate('jwt', {session: false}), imaging_reportsRoutes);
|
||||
|
||||
app.use('/api/adverse_events', passport.authenticate('jwt', {session: false}), adverse_eventsRoutes);
|
||||
|
||||
app.use('/api/medication_administrations', passport.authenticate('jwt', {session: false}), medication_administrationsRoutes);
|
||||
|
||||
app.use('/api/task_notes', passport.authenticate('jwt', {session: false}), task_notesRoutes);
|
||||
|
||||
app.use(
|
||||
'/api/openai',
|
||||
passport.authenticate('jwt', { session: false }),
|
||||
openaiRoutes,
|
||||
);
|
||||
app.use(
|
||||
'/api/ai',
|
||||
passport.authenticate('jwt', { session: false }),
|
||||
openaiRoutes,
|
||||
);
|
||||
|
||||
app.use(
|
||||
'/api/search',
|
||||
passport.authenticate('jwt', { session: false }),
|
||||
searchRoutes);
|
||||
app.use(
|
||||
'/api/sql',
|
||||
passport.authenticate('jwt', { session: false }),
|
||||
sqlRoutes);
|
||||
|
||||
|
||||
const publicDir = path.join(
|
||||
__dirname,
|
||||
'../public',
|
||||
);
|
||||
|
||||
if (fs.existsSync(publicDir)) {
|
||||
app.use('/', express.static(publicDir));
|
||||
|
||||
app.get('*', function(request, response) {
|
||||
response.sendFile(
|
||||
path.resolve(publicDir, 'index.html'),
|
||||
);
|
||||
});
|
||||
}
|
||||
|
||||
const PORT = process.env.NODE_ENV === 'dev_stage' ? 3000 : 8080;
|
||||
|
||||
db.sequelize.sync().then(function () {
|
||||
app.listen(PORT, () => {
|
||||
console.log(`Listening on port ${PORT}`);
|
||||
});
|
||||
});
|
||||
|
||||
module.exports = app;
|
||||
149
backend/src/middlewares/check-permissions.js
Normal file
149
backend/src/middlewares/check-permissions.js
Normal file
@ -0,0 +1,149 @@
|
||||
|
||||
const ValidationError = require('../services/notifications/errors/validation');
|
||||
const RolesDBApi = require('../db/api/roles');
|
||||
|
||||
// Cache for the 'Public' role object
|
||||
let publicRoleCache = null;
|
||||
|
||||
// Function to asynchronously fetch and cache the 'Public' role
|
||||
async function fetchAndCachePublicRole() {
|
||||
try {
|
||||
// Use RolesDBApi to find the role by name 'Public'
|
||||
publicRoleCache = await RolesDBApi.findBy({ name: 'Public' });
|
||||
|
||||
if (!publicRoleCache) {
|
||||
console.error("WARNING: Role 'Public' not found in database during middleware startup. Check your migrations.");
|
||||
// The system might not function correctly without this role. May need to throw an error or use a fallback stub.
|
||||
} else {
|
||||
console.log("'Public' role successfully loaded and cached.");
|
||||
}
|
||||
} catch (error) {
|
||||
console.error("Error fetching 'Public' role during middleware startup:", error);
|
||||
// Handle the error during startup fetch
|
||||
throw error; // Important to know if the app can proceed without the Public role
|
||||
}
|
||||
}
|
||||
|
||||
// Trigger the role fetching when the check-permissions.js module is imported/loaded
|
||||
// This should happen during application startup when routes are being configured.
|
||||
fetchAndCachePublicRole().catch(error => {
|
||||
// Handle the case where the fetchAndCachePublicRole promise is rejected
|
||||
console.error("Critical error during permissions middleware initialization:", error);
|
||||
// Decide here if the process should exit if the Public role is essential.
|
||||
// process.exit(1);
|
||||
});
|
||||
|
||||
/**
|
||||
* Middleware creator to check if the current user (or Public role) has a specific permission.
|
||||
* @param {string} permission - The name of the required permission.
|
||||
* @return {import("express").RequestHandler} Express middleware function.
|
||||
*/
|
||||
function checkPermissions(permission) {
|
||||
return async (req, res, next) => {
|
||||
const { currentUser } = req;
|
||||
|
||||
// 1. Check self-access bypass (only if the user is authenticated)
|
||||
if (currentUser && (currentUser.id === req.params.id || currentUser.id === req.body.id)) {
|
||||
return next(); // User has access to their own resource
|
||||
}
|
||||
|
||||
// 2. Check Custom Permissions (only if the user is authenticated)
|
||||
if (currentUser) {
|
||||
// Ensure custom_permissions is an array before using find
|
||||
const customPermissions = Array.isArray(currentUser.custom_permissions)
|
||||
? currentUser.custom_permissions
|
||||
: [];
|
||||
const userPermission = customPermissions.find(
|
||||
(cp) => cp.name === permission,
|
||||
);
|
||||
if (userPermission) {
|
||||
return next(); // User has a custom permission
|
||||
}
|
||||
}
|
||||
|
||||
// 3. Determine the "effective" role for permission check
|
||||
let effectiveRole = null;
|
||||
try {
|
||||
if (currentUser && currentUser.app_role) {
|
||||
// User is authenticated and has an assigned role
|
||||
effectiveRole = currentUser.app_role;
|
||||
} else {
|
||||
// User is NOT authenticated OR is authenticated but has no role
|
||||
// Use the cached 'Public' role
|
||||
if (!publicRoleCache) {
|
||||
// If the cache is unexpectedly empty (e.g., startup error caught),
|
||||
// we can try fetching the role again synchronously (less ideal) or just deny access.
|
||||
console.error("Public role cache is empty. Attempting synchronous fetch...");
|
||||
// Less efficient fallback option:
|
||||
effectiveRole = await RolesDBApi.findBy({ name: 'Public' }); // Could be slow
|
||||
if (!effectiveRole) {
|
||||
// If even the synchronous attempt failed
|
||||
return next(new Error("Internal Server Error: Public role missing and cannot be fetched."));
|
||||
}
|
||||
} else {
|
||||
effectiveRole = publicRoleCache; // Use the cached object
|
||||
}
|
||||
}
|
||||
|
||||
// Check if we got a valid role object
|
||||
if (!effectiveRole) {
|
||||
return next(new Error("Internal Server Error: Could not determine effective role."));
|
||||
}
|
||||
|
||||
// 4. Check Permissions on the "effective" role
|
||||
// Assume the effectiveRole object (from app_role or RolesDBApi) has a getPermissions() method
|
||||
// or a 'permissions' property (if permissions are eagerly loaded).
|
||||
let rolePermissions = [];
|
||||
if (typeof effectiveRole.getPermissions === 'function') {
|
||||
rolePermissions = await effectiveRole.getPermissions(); // Get permissions asynchronously if the method exists
|
||||
} else if (Array.isArray(effectiveRole.permissions)) {
|
||||
rolePermissions = effectiveRole.permissions; // Or take from property if permissions are pre-loaded
|
||||
} else {
|
||||
console.error("Role object lacks getPermissions() method or permissions property:", effectiveRole);
|
||||
return next(new Error("Internal Server Error: Invalid role object format."));
|
||||
}
|
||||
|
||||
|
||||
if (rolePermissions.find((p) => p.name === permission)) {
|
||||
next(); // The "effective" role has the required permission
|
||||
} else {
|
||||
// The "effective" role does not have the required permission
|
||||
const roleName = effectiveRole.name || 'unknown role';
|
||||
next(new ValidationError('auth.forbidden', `Role '${roleName}' denied access to '${permission}'.`));
|
||||
}
|
||||
|
||||
} catch (e) {
|
||||
// Handle errors during role or permission fetching
|
||||
console.error("Error during permission check:", e);
|
||||
next(e); // Pass the error to the next middleware
|
||||
}
|
||||
};
|
||||
}
|
||||
|
||||
const METHOD_MAP = {
|
||||
POST: 'CREATE',
|
||||
GET: 'READ',
|
||||
PUT: 'UPDATE',
|
||||
PATCH: 'UPDATE',
|
||||
DELETE: 'DELETE',
|
||||
};
|
||||
|
||||
/**
|
||||
* Middleware creator to check standard CRUD permissions based on HTTP method and entity name.
|
||||
* @param {string} name - The name of the entity.
|
||||
* @return {import("express").RequestHandler} Express middleware function.
|
||||
*/
|
||||
function checkCrudPermissions(name) {
|
||||
return (req, res, next) => {
|
||||
// Dynamically determine the permission name (e.g., 'READ_USERS')
|
||||
const permissionName = `${METHOD_MAP[req.method]}_${name.toUpperCase()}`;
|
||||
// Call the checkPermissions middleware with the determined permission
|
||||
checkPermissions(permissionName)(req, res, next);
|
||||
};
|
||||
}
|
||||
|
||||
module.exports = {
|
||||
checkPermissions,
|
||||
checkCrudPermissions,
|
||||
};
|
||||
|
||||
11
backend/src/middlewares/upload.js
Normal file
11
backend/src/middlewares/upload.js
Normal file
@ -0,0 +1,11 @@
|
||||
const util = require('util');
|
||||
const Multer = require('multer');
|
||||
const maxSize = 10 * 1024 * 1024;
|
||||
|
||||
let processFile = Multer({
|
||||
storage: Multer.memoryStorage(),
|
||||
limits: { fileSize: maxSize },
|
||||
}).single("file");
|
||||
|
||||
let processFileMiddleware = util.promisify(processFile);
|
||||
module.exports = processFileMiddleware;
|
||||
439
backend/src/routes/adverse_events.js
Normal file
439
backend/src/routes/adverse_events.js
Normal file
@ -0,0 +1,439 @@
|
||||
|
||||
const express = require('express');
|
||||
|
||||
const Adverse_eventsService = require('../services/adverse_events');
|
||||
const Adverse_eventsDBApi = require('../db/api/adverse_events');
|
||||
const wrapAsync = require('../helpers').wrapAsync;
|
||||
|
||||
|
||||
const router = express.Router();
|
||||
|
||||
const { parse } = require('json2csv');
|
||||
|
||||
|
||||
const {
|
||||
checkCrudPermissions,
|
||||
} = require('../middlewares/check-permissions');
|
||||
|
||||
router.use(checkCrudPermissions('adverse_events'));
|
||||
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* components:
|
||||
* schemas:
|
||||
* Adverse_events:
|
||||
* type: object
|
||||
* properties:
|
||||
|
||||
* event_name:
|
||||
* type: string
|
||||
* default: event_name
|
||||
* management:
|
||||
* type: string
|
||||
* default: management
|
||||
* notes:
|
||||
* type: string
|
||||
* default: notes
|
||||
|
||||
|
||||
|
||||
*
|
||||
*
|
||||
*
|
||||
*
|
||||
*/
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* tags:
|
||||
* name: Adverse_events
|
||||
* description: The Adverse_events managing API
|
||||
*/
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/adverse_events:
|
||||
* post:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Adverse_events]
|
||||
* summary: Add new item
|
||||
* description: Add new item
|
||||
* requestBody:
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* data:
|
||||
* description: Data of the updated item
|
||||
* type: object
|
||||
* $ref: "#/components/schemas/Adverse_events"
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The item was successfully added
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Adverse_events"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 405:
|
||||
* description: Invalid input data
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.post('/', wrapAsync(async (req, res) => {
|
||||
const referer = req.headers.referer || `${req.protocol}://${req.hostname}${req.originalUrl}`;
|
||||
const link = new URL(referer);
|
||||
await Adverse_eventsService.create(req.body.data, req.currentUser, true, link.host);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/budgets/bulk-import:
|
||||
* post:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Adverse_events]
|
||||
* summary: Bulk import items
|
||||
* description: Bulk import items
|
||||
* requestBody:
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* data:
|
||||
* description: Data of the updated items
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Adverse_events"
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The items were successfully imported
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Adverse_events"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 405:
|
||||
* description: Invalid input data
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*
|
||||
*/
|
||||
router.post('/bulk-import', wrapAsync(async (req, res) => {
|
||||
const referer = req.headers.referer || `${req.protocol}://${req.hostname}${req.originalUrl}`;
|
||||
const link = new URL(referer);
|
||||
await Adverse_eventsService.bulkImport(req, res, true, link.host);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/adverse_events/{id}:
|
||||
* put:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Adverse_events]
|
||||
* summary: Update the data of the selected item
|
||||
* description: Update the data of the selected item
|
||||
* parameters:
|
||||
* - in: path
|
||||
* name: id
|
||||
* description: Item ID to update
|
||||
* required: true
|
||||
* schema:
|
||||
* type: string
|
||||
* requestBody:
|
||||
* description: Set new item data
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* id:
|
||||
* description: ID of the updated item
|
||||
* type: string
|
||||
* data:
|
||||
* description: Data of the updated item
|
||||
* type: object
|
||||
* $ref: "#/components/schemas/Adverse_events"
|
||||
* required:
|
||||
* - id
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The item data was successfully updated
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Adverse_events"
|
||||
* 400:
|
||||
* description: Invalid ID supplied
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Item not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.put('/:id', wrapAsync(async (req, res) => {
|
||||
await Adverse_eventsService.update(req.body.data, req.body.id, req.currentUser);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/adverse_events/{id}:
|
||||
* delete:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Adverse_events]
|
||||
* summary: Delete the selected item
|
||||
* description: Delete the selected item
|
||||
* parameters:
|
||||
* - in: path
|
||||
* name: id
|
||||
* description: Item ID to delete
|
||||
* required: true
|
||||
* schema:
|
||||
* type: string
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The item was successfully deleted
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Adverse_events"
|
||||
* 400:
|
||||
* description: Invalid ID supplied
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Item not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.delete('/:id', wrapAsync(async (req, res) => {
|
||||
await Adverse_eventsService.remove(req.params.id, req.currentUser);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/adverse_events/deleteByIds:
|
||||
* post:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Adverse_events]
|
||||
* summary: Delete the selected item list
|
||||
* description: Delete the selected item list
|
||||
* requestBody:
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* ids:
|
||||
* description: IDs of the updated items
|
||||
* type: array
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The items was successfully deleted
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Adverse_events"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Items not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.post('/deleteByIds', wrapAsync(async (req, res) => {
|
||||
await Adverse_eventsService.deleteByIds(req.body.data, req.currentUser);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/adverse_events:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Adverse_events]
|
||||
* summary: Get all adverse_events
|
||||
* description: Get all adverse_events
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Adverse_events list successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Adverse_events"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Data not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/', wrapAsync(async (req, res) => {
|
||||
const filetype = req.query.filetype
|
||||
|
||||
const currentUser = req.currentUser;
|
||||
const payload = await Adverse_eventsDBApi.findAll(
|
||||
req.query, { currentUser }
|
||||
);
|
||||
if (filetype && filetype === 'csv') {
|
||||
const fields = ['id','event_name','management','notes',
|
||||
|
||||
|
||||
'event_datetime',
|
||||
];
|
||||
const opts = { fields };
|
||||
try {
|
||||
const csv = parse(payload.rows, opts);
|
||||
res.status(200).attachment(csv);
|
||||
res.send(csv)
|
||||
|
||||
} catch (err) {
|
||||
console.error(err);
|
||||
}
|
||||
} else {
|
||||
res.status(200).send(payload);
|
||||
}
|
||||
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/adverse_events/count:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Adverse_events]
|
||||
* summary: Count all adverse_events
|
||||
* description: Count all adverse_events
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Adverse_events count successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Adverse_events"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Data not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/count', wrapAsync(async (req, res) => {
|
||||
|
||||
const currentUser = req.currentUser;
|
||||
const payload = await Adverse_eventsDBApi.findAll(
|
||||
req.query,
|
||||
null,
|
||||
{ countOnly: true, currentUser }
|
||||
);
|
||||
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/adverse_events/autocomplete:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Adverse_events]
|
||||
* summary: Find all adverse_events that match search criteria
|
||||
* description: Find all adverse_events that match search criteria
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Adverse_events list successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Adverse_events"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Data not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/autocomplete', async (req, res) => {
|
||||
|
||||
const payload = await Adverse_eventsDBApi.findAllAutocomplete(
|
||||
req.query.query,
|
||||
req.query.limit,
|
||||
req.query.offset,
|
||||
|
||||
);
|
||||
|
||||
res.status(200).send(payload);
|
||||
});
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/adverse_events/{id}:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Adverse_events]
|
||||
* summary: Get selected item
|
||||
* description: Get selected item
|
||||
* parameters:
|
||||
* - in: path
|
||||
* name: id
|
||||
* description: ID of item to get
|
||||
* required: true
|
||||
* schema:
|
||||
* type: string
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Selected item successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Adverse_events"
|
||||
* 400:
|
||||
* description: Invalid ID supplied
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Item not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/:id', wrapAsync(async (req, res) => {
|
||||
const payload = await Adverse_eventsDBApi.findBy(
|
||||
{ id: req.params.id },
|
||||
);
|
||||
|
||||
|
||||
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
router.use('/', require('../helpers').commonErrorHandler);
|
||||
|
||||
module.exports = router;
|
||||
437
backend/src/routes/appointments.js
Normal file
437
backend/src/routes/appointments.js
Normal file
@ -0,0 +1,437 @@
|
||||
|
||||
const express = require('express');
|
||||
|
||||
const AppointmentsService = require('../services/appointments');
|
||||
const AppointmentsDBApi = require('../db/api/appointments');
|
||||
const wrapAsync = require('../helpers').wrapAsync;
|
||||
|
||||
|
||||
const router = express.Router();
|
||||
|
||||
const { parse } = require('json2csv');
|
||||
|
||||
|
||||
const {
|
||||
checkCrudPermissions,
|
||||
} = require('../middlewares/check-permissions');
|
||||
|
||||
router.use(checkCrudPermissions('appointments'));
|
||||
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* components:
|
||||
* schemas:
|
||||
* Appointments:
|
||||
* type: object
|
||||
* properties:
|
||||
|
||||
* location:
|
||||
* type: string
|
||||
* default: location
|
||||
* reason:
|
||||
* type: string
|
||||
* default: reason
|
||||
* notes:
|
||||
* type: string
|
||||
* default: notes
|
||||
|
||||
|
||||
|
||||
*
|
||||
*
|
||||
*/
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* tags:
|
||||
* name: Appointments
|
||||
* description: The Appointments managing API
|
||||
*/
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/appointments:
|
||||
* post:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Appointments]
|
||||
* summary: Add new item
|
||||
* description: Add new item
|
||||
* requestBody:
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* data:
|
||||
* description: Data of the updated item
|
||||
* type: object
|
||||
* $ref: "#/components/schemas/Appointments"
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The item was successfully added
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Appointments"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 405:
|
||||
* description: Invalid input data
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.post('/', wrapAsync(async (req, res) => {
|
||||
const referer = req.headers.referer || `${req.protocol}://${req.hostname}${req.originalUrl}`;
|
||||
const link = new URL(referer);
|
||||
await AppointmentsService.create(req.body.data, req.currentUser, true, link.host);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/budgets/bulk-import:
|
||||
* post:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Appointments]
|
||||
* summary: Bulk import items
|
||||
* description: Bulk import items
|
||||
* requestBody:
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* data:
|
||||
* description: Data of the updated items
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Appointments"
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The items were successfully imported
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Appointments"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 405:
|
||||
* description: Invalid input data
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*
|
||||
*/
|
||||
router.post('/bulk-import', wrapAsync(async (req, res) => {
|
||||
const referer = req.headers.referer || `${req.protocol}://${req.hostname}${req.originalUrl}`;
|
||||
const link = new URL(referer);
|
||||
await AppointmentsService.bulkImport(req, res, true, link.host);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/appointments/{id}:
|
||||
* put:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Appointments]
|
||||
* summary: Update the data of the selected item
|
||||
* description: Update the data of the selected item
|
||||
* parameters:
|
||||
* - in: path
|
||||
* name: id
|
||||
* description: Item ID to update
|
||||
* required: true
|
||||
* schema:
|
||||
* type: string
|
||||
* requestBody:
|
||||
* description: Set new item data
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* id:
|
||||
* description: ID of the updated item
|
||||
* type: string
|
||||
* data:
|
||||
* description: Data of the updated item
|
||||
* type: object
|
||||
* $ref: "#/components/schemas/Appointments"
|
||||
* required:
|
||||
* - id
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The item data was successfully updated
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Appointments"
|
||||
* 400:
|
||||
* description: Invalid ID supplied
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Item not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.put('/:id', wrapAsync(async (req, res) => {
|
||||
await AppointmentsService.update(req.body.data, req.body.id, req.currentUser);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/appointments/{id}:
|
||||
* delete:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Appointments]
|
||||
* summary: Delete the selected item
|
||||
* description: Delete the selected item
|
||||
* parameters:
|
||||
* - in: path
|
||||
* name: id
|
||||
* description: Item ID to delete
|
||||
* required: true
|
||||
* schema:
|
||||
* type: string
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The item was successfully deleted
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Appointments"
|
||||
* 400:
|
||||
* description: Invalid ID supplied
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Item not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.delete('/:id', wrapAsync(async (req, res) => {
|
||||
await AppointmentsService.remove(req.params.id, req.currentUser);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/appointments/deleteByIds:
|
||||
* post:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Appointments]
|
||||
* summary: Delete the selected item list
|
||||
* description: Delete the selected item list
|
||||
* requestBody:
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* ids:
|
||||
* description: IDs of the updated items
|
||||
* type: array
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The items was successfully deleted
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Appointments"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Items not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.post('/deleteByIds', wrapAsync(async (req, res) => {
|
||||
await AppointmentsService.deleteByIds(req.body.data, req.currentUser);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/appointments:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Appointments]
|
||||
* summary: Get all appointments
|
||||
* description: Get all appointments
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Appointments list successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Appointments"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Data not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/', wrapAsync(async (req, res) => {
|
||||
const filetype = req.query.filetype
|
||||
|
||||
const currentUser = req.currentUser;
|
||||
const payload = await AppointmentsDBApi.findAll(
|
||||
req.query, { currentUser }
|
||||
);
|
||||
if (filetype && filetype === 'csv') {
|
||||
const fields = ['id','location','reason','notes',
|
||||
|
||||
|
||||
'start_datetime','end_datetime',
|
||||
];
|
||||
const opts = { fields };
|
||||
try {
|
||||
const csv = parse(payload.rows, opts);
|
||||
res.status(200).attachment(csv);
|
||||
res.send(csv)
|
||||
|
||||
} catch (err) {
|
||||
console.error(err);
|
||||
}
|
||||
} else {
|
||||
res.status(200).send(payload);
|
||||
}
|
||||
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/appointments/count:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Appointments]
|
||||
* summary: Count all appointments
|
||||
* description: Count all appointments
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Appointments count successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Appointments"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Data not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/count', wrapAsync(async (req, res) => {
|
||||
|
||||
const currentUser = req.currentUser;
|
||||
const payload = await AppointmentsDBApi.findAll(
|
||||
req.query,
|
||||
null,
|
||||
{ countOnly: true, currentUser }
|
||||
);
|
||||
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/appointments/autocomplete:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Appointments]
|
||||
* summary: Find all appointments that match search criteria
|
||||
* description: Find all appointments that match search criteria
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Appointments list successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Appointments"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Data not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/autocomplete', async (req, res) => {
|
||||
|
||||
const payload = await AppointmentsDBApi.findAllAutocomplete(
|
||||
req.query.query,
|
||||
req.query.limit,
|
||||
req.query.offset,
|
||||
|
||||
);
|
||||
|
||||
res.status(200).send(payload);
|
||||
});
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/appointments/{id}:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Appointments]
|
||||
* summary: Get selected item
|
||||
* description: Get selected item
|
||||
* parameters:
|
||||
* - in: path
|
||||
* name: id
|
||||
* description: ID of item to get
|
||||
* required: true
|
||||
* schema:
|
||||
* type: string
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Selected item successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Appointments"
|
||||
* 400:
|
||||
* description: Invalid ID supplied
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Item not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/:id', wrapAsync(async (req, res) => {
|
||||
const payload = await AppointmentsDBApi.findBy(
|
||||
{ id: req.params.id },
|
||||
);
|
||||
|
||||
|
||||
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
router.use('/', require('../helpers').commonErrorHandler);
|
||||
|
||||
module.exports = router;
|
||||
207
backend/src/routes/auth.js
Normal file
207
backend/src/routes/auth.js
Normal file
@ -0,0 +1,207 @@
|
||||
const express = require('express');
|
||||
const passport = require('passport');
|
||||
|
||||
const config = require('../config');
|
||||
const AuthService = require('../services/auth');
|
||||
const ForbiddenError = require('../services/notifications/errors/forbidden');
|
||||
const EmailSender = require('../services/email');
|
||||
const wrapAsync = require('../helpers').wrapAsync;
|
||||
|
||||
const router = express.Router();
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* components:
|
||||
* schemas:
|
||||
* Auth:
|
||||
* type: object
|
||||
* required:
|
||||
* - email
|
||||
* - password
|
||||
* properties:
|
||||
* email:
|
||||
* type: string
|
||||
* default: admin@flatlogic.com
|
||||
* description: User email
|
||||
* password:
|
||||
* type: string
|
||||
* default: password
|
||||
* description: User password
|
||||
*/
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* tags:
|
||||
* name: Auth
|
||||
* description: Authorization operations
|
||||
*/
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/auth/signin/local:
|
||||
* post:
|
||||
* tags: [Auth]
|
||||
* summary: Logs user into the system
|
||||
* description: Logs user into the system
|
||||
* requestBody:
|
||||
* description: Set valid user email and password
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Auth"
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Successful login
|
||||
* 400:
|
||||
* description: Invalid username/password supplied
|
||||
* x-codegen-request-body-name: body
|
||||
*/
|
||||
|
||||
router.post('/signin/local', wrapAsync(async (req, res) => {
|
||||
const payload = await AuthService.signin(req.body.email, req.body.password, req,);
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/auth/me:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Auth]
|
||||
* summary: Get current authorized user info
|
||||
* description: Get current authorized user info
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Successful retrieval of current authorized user data
|
||||
* 400:
|
||||
* description: Invalid username/password supplied
|
||||
* x-codegen-request-body-name: body
|
||||
*/
|
||||
|
||||
router.get('/me', passport.authenticate('jwt', {session: false}), (req, res) => {
|
||||
if (!req.currentUser || !req.currentUser.id) {
|
||||
throw new ForbiddenError();
|
||||
}
|
||||
|
||||
const payload = req.currentUser;
|
||||
delete payload.password;
|
||||
res.status(200).send(payload);
|
||||
});
|
||||
|
||||
router.put('/password-reset', wrapAsync(async (req, res) => {
|
||||
const payload = await AuthService.passwordReset(req.body.token, req.body.password, req,);
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
router.put('/password-update', passport.authenticate('jwt', {session: false}), wrapAsync(async (req, res) => {
|
||||
const payload = await AuthService.passwordUpdate(req.body.currentPassword, req.body.newPassword, req);
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
router.post('/send-email-address-verification-email', passport.authenticate('jwt', {session: false}), wrapAsync(async (req, res) => {
|
||||
if (!req.currentUser) {
|
||||
throw new ForbiddenError();
|
||||
}
|
||||
|
||||
await AuthService.sendEmailAddressVerificationEmail(req.currentUser.email);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
router.post('/send-password-reset-email', wrapAsync(async (req, res) => {
|
||||
const link = new URL(req.headers.referer);
|
||||
await AuthService.sendPasswordResetEmail(req.body.email, 'register', link.host,);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/auth/signup:
|
||||
* post:
|
||||
* tags: [Auth]
|
||||
* summary: Register new user into the system
|
||||
* description: Register new user into the system
|
||||
* requestBody:
|
||||
* description: Set valid user email and password
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Auth"
|
||||
* responses:
|
||||
* 200:
|
||||
* description: New user successfully signed up
|
||||
* 400:
|
||||
* description: Invalid username/password supplied
|
||||
* 500:
|
||||
* description: Some server error
|
||||
* x-codegen-request-body-name: body
|
||||
*/
|
||||
|
||||
router.post('/signup', wrapAsync(async (req, res) => {
|
||||
const link = new URL(req.headers.referer);
|
||||
const payload = await AuthService.signup(
|
||||
req.body.email,
|
||||
req.body.password,
|
||||
|
||||
req,
|
||||
link.host,
|
||||
)
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
router.put('/profile', passport.authenticate('jwt', {session: false}), wrapAsync(async (req, res) => {
|
||||
if (!req.currentUser || !req.currentUser.id) {
|
||||
throw new ForbiddenError();
|
||||
}
|
||||
|
||||
await AuthService.updateProfile(req.body.profile, req.currentUser);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
router.put('/verify-email', wrapAsync(async (req, res) => {
|
||||
const payload = await AuthService.verifyEmail(req.body.token, req, req.headers.referer)
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
router.get('/email-configured', (req, res) => {
|
||||
const payload = EmailSender.isConfigured;
|
||||
res.status(200).send(payload);
|
||||
});
|
||||
|
||||
router.get('/signin/google', (req, res, next) => {
|
||||
passport.authenticate("google", {scope: ["profile", "email"], state: req.query.app})(req, res, next);
|
||||
});
|
||||
|
||||
router.get('/signin/google/callback', passport.authenticate("google", {failureRedirect: "/login", session: false}),
|
||||
|
||||
function (req, res) {
|
||||
socialRedirect(res, req.query.state, req.user.token, config);
|
||||
}
|
||||
);
|
||||
|
||||
router.get('/signin/microsoft', (req, res, next) => {
|
||||
passport.authenticate("microsoft", {
|
||||
scope: ["https://graph.microsoft.com/user.read openid"],
|
||||
state: req.query.app
|
||||
})(req, res, next);
|
||||
});
|
||||
|
||||
router.get('/signin/microsoft/callback', passport.authenticate("microsoft", {
|
||||
failureRedirect: "/login",
|
||||
session: false
|
||||
}),
|
||||
function (req, res) {
|
||||
socialRedirect(res, req.query.state, req.user.token, config);
|
||||
}
|
||||
);
|
||||
|
||||
router.use('/', require('../helpers').commonErrorHandler);
|
||||
|
||||
function socialRedirect(res, state, token, config) {
|
||||
res.redirect(config.uiUrl + "/login?token=" + token);
|
||||
}
|
||||
|
||||
module.exports = router;
|
||||
447
backend/src/routes/chemo_drug_items.js
Normal file
447
backend/src/routes/chemo_drug_items.js
Normal file
@ -0,0 +1,447 @@
|
||||
|
||||
const express = require('express');
|
||||
|
||||
const Chemo_drug_itemsService = require('../services/chemo_drug_items');
|
||||
const Chemo_drug_itemsDBApi = require('../db/api/chemo_drug_items');
|
||||
const wrapAsync = require('../helpers').wrapAsync;
|
||||
|
||||
|
||||
const router = express.Router();
|
||||
|
||||
const { parse } = require('json2csv');
|
||||
|
||||
|
||||
const {
|
||||
checkCrudPermissions,
|
||||
} = require('../middlewares/check-permissions');
|
||||
|
||||
router.use(checkCrudPermissions('chemo_drug_items'));
|
||||
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* components:
|
||||
* schemas:
|
||||
* Chemo_drug_items:
|
||||
* type: object
|
||||
* properties:
|
||||
|
||||
* drug_name:
|
||||
* type: string
|
||||
* default: drug_name
|
||||
* dose_unit:
|
||||
* type: string
|
||||
* default: dose_unit
|
||||
* administration_instructions:
|
||||
* type: string
|
||||
* default: administration_instructions
|
||||
|
||||
|
||||
* dose:
|
||||
* type: integer
|
||||
* format: int64
|
||||
* calculated_bsa:
|
||||
* type: integer
|
||||
* format: int64
|
||||
* dose_per_m2:
|
||||
* type: integer
|
||||
* format: int64
|
||||
* diluent_volume_ml:
|
||||
* type: integer
|
||||
* format: int64
|
||||
|
||||
*/
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* tags:
|
||||
* name: Chemo_drug_items
|
||||
* description: The Chemo_drug_items managing API
|
||||
*/
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/chemo_drug_items:
|
||||
* post:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Chemo_drug_items]
|
||||
* summary: Add new item
|
||||
* description: Add new item
|
||||
* requestBody:
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* data:
|
||||
* description: Data of the updated item
|
||||
* type: object
|
||||
* $ref: "#/components/schemas/Chemo_drug_items"
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The item was successfully added
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Chemo_drug_items"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 405:
|
||||
* description: Invalid input data
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.post('/', wrapAsync(async (req, res) => {
|
||||
const referer = req.headers.referer || `${req.protocol}://${req.hostname}${req.originalUrl}`;
|
||||
const link = new URL(referer);
|
||||
await Chemo_drug_itemsService.create(req.body.data, req.currentUser, true, link.host);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/budgets/bulk-import:
|
||||
* post:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Chemo_drug_items]
|
||||
* summary: Bulk import items
|
||||
* description: Bulk import items
|
||||
* requestBody:
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* data:
|
||||
* description: Data of the updated items
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Chemo_drug_items"
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The items were successfully imported
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Chemo_drug_items"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 405:
|
||||
* description: Invalid input data
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*
|
||||
*/
|
||||
router.post('/bulk-import', wrapAsync(async (req, res) => {
|
||||
const referer = req.headers.referer || `${req.protocol}://${req.hostname}${req.originalUrl}`;
|
||||
const link = new URL(referer);
|
||||
await Chemo_drug_itemsService.bulkImport(req, res, true, link.host);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/chemo_drug_items/{id}:
|
||||
* put:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Chemo_drug_items]
|
||||
* summary: Update the data of the selected item
|
||||
* description: Update the data of the selected item
|
||||
* parameters:
|
||||
* - in: path
|
||||
* name: id
|
||||
* description: Item ID to update
|
||||
* required: true
|
||||
* schema:
|
||||
* type: string
|
||||
* requestBody:
|
||||
* description: Set new item data
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* id:
|
||||
* description: ID of the updated item
|
||||
* type: string
|
||||
* data:
|
||||
* description: Data of the updated item
|
||||
* type: object
|
||||
* $ref: "#/components/schemas/Chemo_drug_items"
|
||||
* required:
|
||||
* - id
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The item data was successfully updated
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Chemo_drug_items"
|
||||
* 400:
|
||||
* description: Invalid ID supplied
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Item not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.put('/:id', wrapAsync(async (req, res) => {
|
||||
await Chemo_drug_itemsService.update(req.body.data, req.body.id, req.currentUser);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/chemo_drug_items/{id}:
|
||||
* delete:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Chemo_drug_items]
|
||||
* summary: Delete the selected item
|
||||
* description: Delete the selected item
|
||||
* parameters:
|
||||
* - in: path
|
||||
* name: id
|
||||
* description: Item ID to delete
|
||||
* required: true
|
||||
* schema:
|
||||
* type: string
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The item was successfully deleted
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Chemo_drug_items"
|
||||
* 400:
|
||||
* description: Invalid ID supplied
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Item not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.delete('/:id', wrapAsync(async (req, res) => {
|
||||
await Chemo_drug_itemsService.remove(req.params.id, req.currentUser);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/chemo_drug_items/deleteByIds:
|
||||
* post:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Chemo_drug_items]
|
||||
* summary: Delete the selected item list
|
||||
* description: Delete the selected item list
|
||||
* requestBody:
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* ids:
|
||||
* description: IDs of the updated items
|
||||
* type: array
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The items was successfully deleted
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Chemo_drug_items"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Items not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.post('/deleteByIds', wrapAsync(async (req, res) => {
|
||||
await Chemo_drug_itemsService.deleteByIds(req.body.data, req.currentUser);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/chemo_drug_items:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Chemo_drug_items]
|
||||
* summary: Get all chemo_drug_items
|
||||
* description: Get all chemo_drug_items
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Chemo_drug_items list successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Chemo_drug_items"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Data not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/', wrapAsync(async (req, res) => {
|
||||
const filetype = req.query.filetype
|
||||
|
||||
const currentUser = req.currentUser;
|
||||
const payload = await Chemo_drug_itemsDBApi.findAll(
|
||||
req.query, { currentUser }
|
||||
);
|
||||
if (filetype && filetype === 'csv') {
|
||||
const fields = ['id','drug_name','dose_unit','administration_instructions',
|
||||
|
||||
'dose','calculated_bsa','dose_per_m2','diluent_volume_ml',
|
||||
|
||||
];
|
||||
const opts = { fields };
|
||||
try {
|
||||
const csv = parse(payload.rows, opts);
|
||||
res.status(200).attachment(csv);
|
||||
res.send(csv)
|
||||
|
||||
} catch (err) {
|
||||
console.error(err);
|
||||
}
|
||||
} else {
|
||||
res.status(200).send(payload);
|
||||
}
|
||||
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/chemo_drug_items/count:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Chemo_drug_items]
|
||||
* summary: Count all chemo_drug_items
|
||||
* description: Count all chemo_drug_items
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Chemo_drug_items count successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Chemo_drug_items"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Data not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/count', wrapAsync(async (req, res) => {
|
||||
|
||||
const currentUser = req.currentUser;
|
||||
const payload = await Chemo_drug_itemsDBApi.findAll(
|
||||
req.query,
|
||||
null,
|
||||
{ countOnly: true, currentUser }
|
||||
);
|
||||
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/chemo_drug_items/autocomplete:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Chemo_drug_items]
|
||||
* summary: Find all chemo_drug_items that match search criteria
|
||||
* description: Find all chemo_drug_items that match search criteria
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Chemo_drug_items list successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Chemo_drug_items"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Data not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/autocomplete', async (req, res) => {
|
||||
|
||||
const payload = await Chemo_drug_itemsDBApi.findAllAutocomplete(
|
||||
req.query.query,
|
||||
req.query.limit,
|
||||
req.query.offset,
|
||||
|
||||
);
|
||||
|
||||
res.status(200).send(payload);
|
||||
});
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/chemo_drug_items/{id}:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Chemo_drug_items]
|
||||
* summary: Get selected item
|
||||
* description: Get selected item
|
||||
* parameters:
|
||||
* - in: path
|
||||
* name: id
|
||||
* description: ID of item to get
|
||||
* required: true
|
||||
* schema:
|
||||
* type: string
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Selected item successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Chemo_drug_items"
|
||||
* 400:
|
||||
* description: Invalid ID supplied
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Item not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/:id', wrapAsync(async (req, res) => {
|
||||
const payload = await Chemo_drug_itemsDBApi.findBy(
|
||||
{ id: req.params.id },
|
||||
);
|
||||
|
||||
|
||||
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
router.use('/', require('../helpers').commonErrorHandler);
|
||||
|
||||
module.exports = router;
|
||||
440
backend/src/routes/chemotherapy_orders.js
Normal file
440
backend/src/routes/chemotherapy_orders.js
Normal file
@ -0,0 +1,440 @@
|
||||
|
||||
const express = require('express');
|
||||
|
||||
const Chemotherapy_ordersService = require('../services/chemotherapy_orders');
|
||||
const Chemotherapy_ordersDBApi = require('../db/api/chemotherapy_orders');
|
||||
const wrapAsync = require('../helpers').wrapAsync;
|
||||
|
||||
|
||||
const router = express.Router();
|
||||
|
||||
const { parse } = require('json2csv');
|
||||
|
||||
|
||||
const {
|
||||
checkCrudPermissions,
|
||||
} = require('../middlewares/check-permissions');
|
||||
|
||||
router.use(checkCrudPermissions('chemotherapy_orders'));
|
||||
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* components:
|
||||
* schemas:
|
||||
* Chemotherapy_orders:
|
||||
* type: object
|
||||
* properties:
|
||||
|
||||
* pre_medications:
|
||||
* type: string
|
||||
* default: pre_medications
|
||||
* notes:
|
||||
* type: string
|
||||
* default: notes
|
||||
|
||||
* cycle_number:
|
||||
* type: integer
|
||||
* format: int64
|
||||
* day_in_cycle:
|
||||
* type: integer
|
||||
* format: int64
|
||||
|
||||
|
||||
*
|
||||
*
|
||||
*/
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* tags:
|
||||
* name: Chemotherapy_orders
|
||||
* description: The Chemotherapy_orders managing API
|
||||
*/
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/chemotherapy_orders:
|
||||
* post:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Chemotherapy_orders]
|
||||
* summary: Add new item
|
||||
* description: Add new item
|
||||
* requestBody:
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* data:
|
||||
* description: Data of the updated item
|
||||
* type: object
|
||||
* $ref: "#/components/schemas/Chemotherapy_orders"
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The item was successfully added
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Chemotherapy_orders"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 405:
|
||||
* description: Invalid input data
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.post('/', wrapAsync(async (req, res) => {
|
||||
const referer = req.headers.referer || `${req.protocol}://${req.hostname}${req.originalUrl}`;
|
||||
const link = new URL(referer);
|
||||
await Chemotherapy_ordersService.create(req.body.data, req.currentUser, true, link.host);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/budgets/bulk-import:
|
||||
* post:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Chemotherapy_orders]
|
||||
* summary: Bulk import items
|
||||
* description: Bulk import items
|
||||
* requestBody:
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* data:
|
||||
* description: Data of the updated items
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Chemotherapy_orders"
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The items were successfully imported
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Chemotherapy_orders"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 405:
|
||||
* description: Invalid input data
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*
|
||||
*/
|
||||
router.post('/bulk-import', wrapAsync(async (req, res) => {
|
||||
const referer = req.headers.referer || `${req.protocol}://${req.hostname}${req.originalUrl}`;
|
||||
const link = new URL(referer);
|
||||
await Chemotherapy_ordersService.bulkImport(req, res, true, link.host);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/chemotherapy_orders/{id}:
|
||||
* put:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Chemotherapy_orders]
|
||||
* summary: Update the data of the selected item
|
||||
* description: Update the data of the selected item
|
||||
* parameters:
|
||||
* - in: path
|
||||
* name: id
|
||||
* description: Item ID to update
|
||||
* required: true
|
||||
* schema:
|
||||
* type: string
|
||||
* requestBody:
|
||||
* description: Set new item data
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* id:
|
||||
* description: ID of the updated item
|
||||
* type: string
|
||||
* data:
|
||||
* description: Data of the updated item
|
||||
* type: object
|
||||
* $ref: "#/components/schemas/Chemotherapy_orders"
|
||||
* required:
|
||||
* - id
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The item data was successfully updated
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Chemotherapy_orders"
|
||||
* 400:
|
||||
* description: Invalid ID supplied
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Item not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.put('/:id', wrapAsync(async (req, res) => {
|
||||
await Chemotherapy_ordersService.update(req.body.data, req.body.id, req.currentUser);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/chemotherapy_orders/{id}:
|
||||
* delete:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Chemotherapy_orders]
|
||||
* summary: Delete the selected item
|
||||
* description: Delete the selected item
|
||||
* parameters:
|
||||
* - in: path
|
||||
* name: id
|
||||
* description: Item ID to delete
|
||||
* required: true
|
||||
* schema:
|
||||
* type: string
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The item was successfully deleted
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Chemotherapy_orders"
|
||||
* 400:
|
||||
* description: Invalid ID supplied
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Item not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.delete('/:id', wrapAsync(async (req, res) => {
|
||||
await Chemotherapy_ordersService.remove(req.params.id, req.currentUser);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/chemotherapy_orders/deleteByIds:
|
||||
* post:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Chemotherapy_orders]
|
||||
* summary: Delete the selected item list
|
||||
* description: Delete the selected item list
|
||||
* requestBody:
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* ids:
|
||||
* description: IDs of the updated items
|
||||
* type: array
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The items was successfully deleted
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Chemotherapy_orders"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Items not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.post('/deleteByIds', wrapAsync(async (req, res) => {
|
||||
await Chemotherapy_ordersService.deleteByIds(req.body.data, req.currentUser);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/chemotherapy_orders:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Chemotherapy_orders]
|
||||
* summary: Get all chemotherapy_orders
|
||||
* description: Get all chemotherapy_orders
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Chemotherapy_orders list successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Chemotherapy_orders"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Data not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/', wrapAsync(async (req, res) => {
|
||||
const filetype = req.query.filetype
|
||||
|
||||
const currentUser = req.currentUser;
|
||||
const payload = await Chemotherapy_ordersDBApi.findAll(
|
||||
req.query, { currentUser }
|
||||
);
|
||||
if (filetype && filetype === 'csv') {
|
||||
const fields = ['id','pre_medications','notes',
|
||||
'cycle_number','day_in_cycle',
|
||||
|
||||
'planned_datetime',
|
||||
];
|
||||
const opts = { fields };
|
||||
try {
|
||||
const csv = parse(payload.rows, opts);
|
||||
res.status(200).attachment(csv);
|
||||
res.send(csv)
|
||||
|
||||
} catch (err) {
|
||||
console.error(err);
|
||||
}
|
||||
} else {
|
||||
res.status(200).send(payload);
|
||||
}
|
||||
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/chemotherapy_orders/count:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Chemotherapy_orders]
|
||||
* summary: Count all chemotherapy_orders
|
||||
* description: Count all chemotherapy_orders
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Chemotherapy_orders count successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Chemotherapy_orders"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Data not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/count', wrapAsync(async (req, res) => {
|
||||
|
||||
const currentUser = req.currentUser;
|
||||
const payload = await Chemotherapy_ordersDBApi.findAll(
|
||||
req.query,
|
||||
null,
|
||||
{ countOnly: true, currentUser }
|
||||
);
|
||||
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/chemotherapy_orders/autocomplete:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Chemotherapy_orders]
|
||||
* summary: Find all chemotherapy_orders that match search criteria
|
||||
* description: Find all chemotherapy_orders that match search criteria
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Chemotherapy_orders list successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Chemotherapy_orders"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Data not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/autocomplete', async (req, res) => {
|
||||
|
||||
const payload = await Chemotherapy_ordersDBApi.findAllAutocomplete(
|
||||
req.query.query,
|
||||
req.query.limit,
|
||||
req.query.offset,
|
||||
|
||||
);
|
||||
|
||||
res.status(200).send(payload);
|
||||
});
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/chemotherapy_orders/{id}:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Chemotherapy_orders]
|
||||
* summary: Get selected item
|
||||
* description: Get selected item
|
||||
* parameters:
|
||||
* - in: path
|
||||
* name: id
|
||||
* description: ID of item to get
|
||||
* required: true
|
||||
* schema:
|
||||
* type: string
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Selected item successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Chemotherapy_orders"
|
||||
* 400:
|
||||
* description: Invalid ID supplied
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Item not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/:id', wrapAsync(async (req, res) => {
|
||||
const payload = await Chemotherapy_ordersDBApi.findBy(
|
||||
{ id: req.params.id },
|
||||
);
|
||||
|
||||
|
||||
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
router.use('/', require('../helpers').commonErrorHandler);
|
||||
|
||||
module.exports = router;
|
||||
451
backend/src/routes/clinical_visits.js
Normal file
451
backend/src/routes/clinical_visits.js
Normal file
@ -0,0 +1,451 @@
|
||||
|
||||
const express = require('express');
|
||||
|
||||
const Clinical_visitsService = require('../services/clinical_visits');
|
||||
const Clinical_visitsDBApi = require('../db/api/clinical_visits');
|
||||
const wrapAsync = require('../helpers').wrapAsync;
|
||||
|
||||
|
||||
const router = express.Router();
|
||||
|
||||
const { parse } = require('json2csv');
|
||||
|
||||
|
||||
const {
|
||||
checkCrudPermissions,
|
||||
} = require('../middlewares/check-permissions');
|
||||
|
||||
router.use(checkCrudPermissions('clinical_visits'));
|
||||
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* components:
|
||||
* schemas:
|
||||
* Clinical_visits:
|
||||
* type: object
|
||||
* properties:
|
||||
|
||||
* subjective:
|
||||
* type: string
|
||||
* default: subjective
|
||||
* objective:
|
||||
* type: string
|
||||
* default: objective
|
||||
* assessment:
|
||||
* type: string
|
||||
* default: assessment
|
||||
* plan:
|
||||
* type: string
|
||||
* default: plan
|
||||
* toxicity_notes:
|
||||
* type: string
|
||||
* default: toxicity_notes
|
||||
|
||||
|
||||
* weight_kg:
|
||||
* type: integer
|
||||
* format: int64
|
||||
* height_cm:
|
||||
* type: integer
|
||||
* format: int64
|
||||
* bsa_m2:
|
||||
* type: integer
|
||||
* format: int64
|
||||
|
||||
*
|
||||
*/
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* tags:
|
||||
* name: Clinical_visits
|
||||
* description: The Clinical_visits managing API
|
||||
*/
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/clinical_visits:
|
||||
* post:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Clinical_visits]
|
||||
* summary: Add new item
|
||||
* description: Add new item
|
||||
* requestBody:
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* data:
|
||||
* description: Data of the updated item
|
||||
* type: object
|
||||
* $ref: "#/components/schemas/Clinical_visits"
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The item was successfully added
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Clinical_visits"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 405:
|
||||
* description: Invalid input data
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.post('/', wrapAsync(async (req, res) => {
|
||||
const referer = req.headers.referer || `${req.protocol}://${req.hostname}${req.originalUrl}`;
|
||||
const link = new URL(referer);
|
||||
await Clinical_visitsService.create(req.body.data, req.currentUser, true, link.host);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/budgets/bulk-import:
|
||||
* post:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Clinical_visits]
|
||||
* summary: Bulk import items
|
||||
* description: Bulk import items
|
||||
* requestBody:
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* data:
|
||||
* description: Data of the updated items
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Clinical_visits"
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The items were successfully imported
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Clinical_visits"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 405:
|
||||
* description: Invalid input data
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*
|
||||
*/
|
||||
router.post('/bulk-import', wrapAsync(async (req, res) => {
|
||||
const referer = req.headers.referer || `${req.protocol}://${req.hostname}${req.originalUrl}`;
|
||||
const link = new URL(referer);
|
||||
await Clinical_visitsService.bulkImport(req, res, true, link.host);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/clinical_visits/{id}:
|
||||
* put:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Clinical_visits]
|
||||
* summary: Update the data of the selected item
|
||||
* description: Update the data of the selected item
|
||||
* parameters:
|
||||
* - in: path
|
||||
* name: id
|
||||
* description: Item ID to update
|
||||
* required: true
|
||||
* schema:
|
||||
* type: string
|
||||
* requestBody:
|
||||
* description: Set new item data
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* id:
|
||||
* description: ID of the updated item
|
||||
* type: string
|
||||
* data:
|
||||
* description: Data of the updated item
|
||||
* type: object
|
||||
* $ref: "#/components/schemas/Clinical_visits"
|
||||
* required:
|
||||
* - id
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The item data was successfully updated
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Clinical_visits"
|
||||
* 400:
|
||||
* description: Invalid ID supplied
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Item not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.put('/:id', wrapAsync(async (req, res) => {
|
||||
await Clinical_visitsService.update(req.body.data, req.body.id, req.currentUser);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/clinical_visits/{id}:
|
||||
* delete:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Clinical_visits]
|
||||
* summary: Delete the selected item
|
||||
* description: Delete the selected item
|
||||
* parameters:
|
||||
* - in: path
|
||||
* name: id
|
||||
* description: Item ID to delete
|
||||
* required: true
|
||||
* schema:
|
||||
* type: string
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The item was successfully deleted
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Clinical_visits"
|
||||
* 400:
|
||||
* description: Invalid ID supplied
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Item not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.delete('/:id', wrapAsync(async (req, res) => {
|
||||
await Clinical_visitsService.remove(req.params.id, req.currentUser);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/clinical_visits/deleteByIds:
|
||||
* post:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Clinical_visits]
|
||||
* summary: Delete the selected item list
|
||||
* description: Delete the selected item list
|
||||
* requestBody:
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* ids:
|
||||
* description: IDs of the updated items
|
||||
* type: array
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The items was successfully deleted
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Clinical_visits"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Items not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.post('/deleteByIds', wrapAsync(async (req, res) => {
|
||||
await Clinical_visitsService.deleteByIds(req.body.data, req.currentUser);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/clinical_visits:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Clinical_visits]
|
||||
* summary: Get all clinical_visits
|
||||
* description: Get all clinical_visits
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Clinical_visits list successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Clinical_visits"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Data not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/', wrapAsync(async (req, res) => {
|
||||
const filetype = req.query.filetype
|
||||
|
||||
const currentUser = req.currentUser;
|
||||
const payload = await Clinical_visitsDBApi.findAll(
|
||||
req.query, { currentUser }
|
||||
);
|
||||
if (filetype && filetype === 'csv') {
|
||||
const fields = ['id','subjective','objective','assessment','plan','toxicity_notes',
|
||||
|
||||
'weight_kg','height_cm','bsa_m2',
|
||||
'visit_datetime',
|
||||
];
|
||||
const opts = { fields };
|
||||
try {
|
||||
const csv = parse(payload.rows, opts);
|
||||
res.status(200).attachment(csv);
|
||||
res.send(csv)
|
||||
|
||||
} catch (err) {
|
||||
console.error(err);
|
||||
}
|
||||
} else {
|
||||
res.status(200).send(payload);
|
||||
}
|
||||
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/clinical_visits/count:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Clinical_visits]
|
||||
* summary: Count all clinical_visits
|
||||
* description: Count all clinical_visits
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Clinical_visits count successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Clinical_visits"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Data not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/count', wrapAsync(async (req, res) => {
|
||||
|
||||
const currentUser = req.currentUser;
|
||||
const payload = await Clinical_visitsDBApi.findAll(
|
||||
req.query,
|
||||
null,
|
||||
{ countOnly: true, currentUser }
|
||||
);
|
||||
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/clinical_visits/autocomplete:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Clinical_visits]
|
||||
* summary: Find all clinical_visits that match search criteria
|
||||
* description: Find all clinical_visits that match search criteria
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Clinical_visits list successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Clinical_visits"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Data not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/autocomplete', async (req, res) => {
|
||||
|
||||
const payload = await Clinical_visitsDBApi.findAllAutocomplete(
|
||||
req.query.query,
|
||||
req.query.limit,
|
||||
req.query.offset,
|
||||
|
||||
);
|
||||
|
||||
res.status(200).send(payload);
|
||||
});
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/clinical_visits/{id}:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Clinical_visits]
|
||||
* summary: Get selected item
|
||||
* description: Get selected item
|
||||
* parameters:
|
||||
* - in: path
|
||||
* name: id
|
||||
* description: ID of item to get
|
||||
* required: true
|
||||
* schema:
|
||||
* type: string
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Selected item successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Clinical_visits"
|
||||
* 400:
|
||||
* description: Invalid ID supplied
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Item not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/:id', wrapAsync(async (req, res) => {
|
||||
const payload = await Clinical_visitsDBApi.findBy(
|
||||
{ id: req.params.id },
|
||||
);
|
||||
|
||||
|
||||
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
router.use('/', require('../helpers').commonErrorHandler);
|
||||
|
||||
module.exports = router;
|
||||
0
backend/src/routes/contactForm.js
Normal file
0
backend/src/routes/contactForm.js
Normal file
438
backend/src/routes/departments.js
Normal file
438
backend/src/routes/departments.js
Normal file
@ -0,0 +1,438 @@
|
||||
|
||||
const express = require('express');
|
||||
|
||||
const DepartmentsService = require('../services/departments');
|
||||
const DepartmentsDBApi = require('../db/api/departments');
|
||||
const wrapAsync = require('../helpers').wrapAsync;
|
||||
|
||||
|
||||
const router = express.Router();
|
||||
|
||||
const { parse } = require('json2csv');
|
||||
|
||||
|
||||
const {
|
||||
checkCrudPermissions,
|
||||
} = require('../middlewares/check-permissions');
|
||||
|
||||
router.use(checkCrudPermissions('departments'));
|
||||
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* components:
|
||||
* schemas:
|
||||
* Departments:
|
||||
* type: object
|
||||
* properties:
|
||||
|
||||
* name:
|
||||
* type: string
|
||||
* default: name
|
||||
* code:
|
||||
* type: string
|
||||
* default: code
|
||||
* location:
|
||||
* type: string
|
||||
* default: location
|
||||
* phone:
|
||||
* type: string
|
||||
* default: phone
|
||||
|
||||
|
||||
|
||||
*/
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* tags:
|
||||
* name: Departments
|
||||
* description: The Departments managing API
|
||||
*/
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/departments:
|
||||
* post:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Departments]
|
||||
* summary: Add new item
|
||||
* description: Add new item
|
||||
* requestBody:
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* data:
|
||||
* description: Data of the updated item
|
||||
* type: object
|
||||
* $ref: "#/components/schemas/Departments"
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The item was successfully added
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Departments"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 405:
|
||||
* description: Invalid input data
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.post('/', wrapAsync(async (req, res) => {
|
||||
const referer = req.headers.referer || `${req.protocol}://${req.hostname}${req.originalUrl}`;
|
||||
const link = new URL(referer);
|
||||
await DepartmentsService.create(req.body.data, req.currentUser, true, link.host);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/budgets/bulk-import:
|
||||
* post:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Departments]
|
||||
* summary: Bulk import items
|
||||
* description: Bulk import items
|
||||
* requestBody:
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* data:
|
||||
* description: Data of the updated items
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Departments"
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The items were successfully imported
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Departments"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 405:
|
||||
* description: Invalid input data
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*
|
||||
*/
|
||||
router.post('/bulk-import', wrapAsync(async (req, res) => {
|
||||
const referer = req.headers.referer || `${req.protocol}://${req.hostname}${req.originalUrl}`;
|
||||
const link = new URL(referer);
|
||||
await DepartmentsService.bulkImport(req, res, true, link.host);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/departments/{id}:
|
||||
* put:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Departments]
|
||||
* summary: Update the data of the selected item
|
||||
* description: Update the data of the selected item
|
||||
* parameters:
|
||||
* - in: path
|
||||
* name: id
|
||||
* description: Item ID to update
|
||||
* required: true
|
||||
* schema:
|
||||
* type: string
|
||||
* requestBody:
|
||||
* description: Set new item data
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* id:
|
||||
* description: ID of the updated item
|
||||
* type: string
|
||||
* data:
|
||||
* description: Data of the updated item
|
||||
* type: object
|
||||
* $ref: "#/components/schemas/Departments"
|
||||
* required:
|
||||
* - id
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The item data was successfully updated
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Departments"
|
||||
* 400:
|
||||
* description: Invalid ID supplied
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Item not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.put('/:id', wrapAsync(async (req, res) => {
|
||||
await DepartmentsService.update(req.body.data, req.body.id, req.currentUser);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/departments/{id}:
|
||||
* delete:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Departments]
|
||||
* summary: Delete the selected item
|
||||
* description: Delete the selected item
|
||||
* parameters:
|
||||
* - in: path
|
||||
* name: id
|
||||
* description: Item ID to delete
|
||||
* required: true
|
||||
* schema:
|
||||
* type: string
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The item was successfully deleted
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Departments"
|
||||
* 400:
|
||||
* description: Invalid ID supplied
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Item not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.delete('/:id', wrapAsync(async (req, res) => {
|
||||
await DepartmentsService.remove(req.params.id, req.currentUser);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/departments/deleteByIds:
|
||||
* post:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Departments]
|
||||
* summary: Delete the selected item list
|
||||
* description: Delete the selected item list
|
||||
* requestBody:
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* ids:
|
||||
* description: IDs of the updated items
|
||||
* type: array
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The items was successfully deleted
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Departments"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Items not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.post('/deleteByIds', wrapAsync(async (req, res) => {
|
||||
await DepartmentsService.deleteByIds(req.body.data, req.currentUser);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/departments:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Departments]
|
||||
* summary: Get all departments
|
||||
* description: Get all departments
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Departments list successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Departments"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Data not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/', wrapAsync(async (req, res) => {
|
||||
const filetype = req.query.filetype
|
||||
|
||||
const currentUser = req.currentUser;
|
||||
const payload = await DepartmentsDBApi.findAll(
|
||||
req.query, { currentUser }
|
||||
);
|
||||
if (filetype && filetype === 'csv') {
|
||||
const fields = ['id','name','code','location','phone',
|
||||
|
||||
|
||||
|
||||
];
|
||||
const opts = { fields };
|
||||
try {
|
||||
const csv = parse(payload.rows, opts);
|
||||
res.status(200).attachment(csv);
|
||||
res.send(csv)
|
||||
|
||||
} catch (err) {
|
||||
console.error(err);
|
||||
}
|
||||
} else {
|
||||
res.status(200).send(payload);
|
||||
}
|
||||
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/departments/count:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Departments]
|
||||
* summary: Count all departments
|
||||
* description: Count all departments
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Departments count successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Departments"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Data not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/count', wrapAsync(async (req, res) => {
|
||||
|
||||
const currentUser = req.currentUser;
|
||||
const payload = await DepartmentsDBApi.findAll(
|
||||
req.query,
|
||||
null,
|
||||
{ countOnly: true, currentUser }
|
||||
);
|
||||
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/departments/autocomplete:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Departments]
|
||||
* summary: Find all departments that match search criteria
|
||||
* description: Find all departments that match search criteria
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Departments list successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Departments"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Data not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/autocomplete', async (req, res) => {
|
||||
|
||||
const payload = await DepartmentsDBApi.findAllAutocomplete(
|
||||
req.query.query,
|
||||
req.query.limit,
|
||||
req.query.offset,
|
||||
|
||||
);
|
||||
|
||||
res.status(200).send(payload);
|
||||
});
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/departments/{id}:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Departments]
|
||||
* summary: Get selected item
|
||||
* description: Get selected item
|
||||
* parameters:
|
||||
* - in: path
|
||||
* name: id
|
||||
* description: ID of item to get
|
||||
* required: true
|
||||
* schema:
|
||||
* type: string
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Selected item successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Departments"
|
||||
* 400:
|
||||
* description: Invalid ID supplied
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Item not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/:id', wrapAsync(async (req, res) => {
|
||||
const payload = await DepartmentsDBApi.findBy(
|
||||
{ id: req.params.id },
|
||||
);
|
||||
|
||||
|
||||
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
router.use('/', require('../helpers').commonErrorHandler);
|
||||
|
||||
module.exports = router;
|
||||
32
backend/src/routes/file.js
Normal file
32
backend/src/routes/file.js
Normal file
@ -0,0 +1,32 @@
|
||||
const express = require('express');
|
||||
const config = require('../config');
|
||||
const path = require('path');
|
||||
const passport = require('passport');
|
||||
const services = require('../services/file');
|
||||
const router = express.Router();
|
||||
|
||||
router.get('/download', (req, res) => {
|
||||
if (process.env.NODE_ENV == "production" || process.env.NEXT_PUBLIC_BACK_API) {
|
||||
services.downloadGCloud(req, res);
|
||||
}
|
||||
else {
|
||||
services.downloadLocal(req, res);
|
||||
}
|
||||
});
|
||||
|
||||
router.post('/upload/:table/:field', passport.authenticate('jwt', {session: false}), (req, res) => {
|
||||
const fileName = `${req.params.table}/${req.params.field}`;
|
||||
|
||||
if (process.env.NODE_ENV == "production" || process.env.NEXT_PUBLIC_BACK_API) {
|
||||
services.uploadGCloud(fileName, req, res);
|
||||
}
|
||||
else {
|
||||
services.uploadLocal(fileName, {
|
||||
entity: null,
|
||||
maxFileSize: 10 * 1024 * 1024,
|
||||
folderIncludesAuthenticationUid: false,
|
||||
})(req, res);
|
||||
}
|
||||
});
|
||||
|
||||
module.exports = router;
|
||||
435
backend/src/routes/imaging_orders.js
Normal file
435
backend/src/routes/imaging_orders.js
Normal file
@ -0,0 +1,435 @@
|
||||
|
||||
const express = require('express');
|
||||
|
||||
const Imaging_ordersService = require('../services/imaging_orders');
|
||||
const Imaging_ordersDBApi = require('../db/api/imaging_orders');
|
||||
const wrapAsync = require('../helpers').wrapAsync;
|
||||
|
||||
|
||||
const router = express.Router();
|
||||
|
||||
const { parse } = require('json2csv');
|
||||
|
||||
|
||||
const {
|
||||
checkCrudPermissions,
|
||||
} = require('../middlewares/check-permissions');
|
||||
|
||||
router.use(checkCrudPermissions('imaging_orders'));
|
||||
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* components:
|
||||
* schemas:
|
||||
* Imaging_orders:
|
||||
* type: object
|
||||
* properties:
|
||||
|
||||
* body_part:
|
||||
* type: string
|
||||
* default: body_part
|
||||
* clinical_indication:
|
||||
* type: string
|
||||
* default: clinical_indication
|
||||
|
||||
|
||||
|
||||
*
|
||||
*
|
||||
*
|
||||
*/
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* tags:
|
||||
* name: Imaging_orders
|
||||
* description: The Imaging_orders managing API
|
||||
*/
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/imaging_orders:
|
||||
* post:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Imaging_orders]
|
||||
* summary: Add new item
|
||||
* description: Add new item
|
||||
* requestBody:
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* data:
|
||||
* description: Data of the updated item
|
||||
* type: object
|
||||
* $ref: "#/components/schemas/Imaging_orders"
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The item was successfully added
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Imaging_orders"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 405:
|
||||
* description: Invalid input data
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.post('/', wrapAsync(async (req, res) => {
|
||||
const referer = req.headers.referer || `${req.protocol}://${req.hostname}${req.originalUrl}`;
|
||||
const link = new URL(referer);
|
||||
await Imaging_ordersService.create(req.body.data, req.currentUser, true, link.host);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/budgets/bulk-import:
|
||||
* post:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Imaging_orders]
|
||||
* summary: Bulk import items
|
||||
* description: Bulk import items
|
||||
* requestBody:
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* data:
|
||||
* description: Data of the updated items
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Imaging_orders"
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The items were successfully imported
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Imaging_orders"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 405:
|
||||
* description: Invalid input data
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*
|
||||
*/
|
||||
router.post('/bulk-import', wrapAsync(async (req, res) => {
|
||||
const referer = req.headers.referer || `${req.protocol}://${req.hostname}${req.originalUrl}`;
|
||||
const link = new URL(referer);
|
||||
await Imaging_ordersService.bulkImport(req, res, true, link.host);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/imaging_orders/{id}:
|
||||
* put:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Imaging_orders]
|
||||
* summary: Update the data of the selected item
|
||||
* description: Update the data of the selected item
|
||||
* parameters:
|
||||
* - in: path
|
||||
* name: id
|
||||
* description: Item ID to update
|
||||
* required: true
|
||||
* schema:
|
||||
* type: string
|
||||
* requestBody:
|
||||
* description: Set new item data
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* id:
|
||||
* description: ID of the updated item
|
||||
* type: string
|
||||
* data:
|
||||
* description: Data of the updated item
|
||||
* type: object
|
||||
* $ref: "#/components/schemas/Imaging_orders"
|
||||
* required:
|
||||
* - id
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The item data was successfully updated
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Imaging_orders"
|
||||
* 400:
|
||||
* description: Invalid ID supplied
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Item not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.put('/:id', wrapAsync(async (req, res) => {
|
||||
await Imaging_ordersService.update(req.body.data, req.body.id, req.currentUser);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/imaging_orders/{id}:
|
||||
* delete:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Imaging_orders]
|
||||
* summary: Delete the selected item
|
||||
* description: Delete the selected item
|
||||
* parameters:
|
||||
* - in: path
|
||||
* name: id
|
||||
* description: Item ID to delete
|
||||
* required: true
|
||||
* schema:
|
||||
* type: string
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The item was successfully deleted
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Imaging_orders"
|
||||
* 400:
|
||||
* description: Invalid ID supplied
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Item not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.delete('/:id', wrapAsync(async (req, res) => {
|
||||
await Imaging_ordersService.remove(req.params.id, req.currentUser);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/imaging_orders/deleteByIds:
|
||||
* post:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Imaging_orders]
|
||||
* summary: Delete the selected item list
|
||||
* description: Delete the selected item list
|
||||
* requestBody:
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* ids:
|
||||
* description: IDs of the updated items
|
||||
* type: array
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The items was successfully deleted
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Imaging_orders"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Items not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.post('/deleteByIds', wrapAsync(async (req, res) => {
|
||||
await Imaging_ordersService.deleteByIds(req.body.data, req.currentUser);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/imaging_orders:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Imaging_orders]
|
||||
* summary: Get all imaging_orders
|
||||
* description: Get all imaging_orders
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Imaging_orders list successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Imaging_orders"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Data not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/', wrapAsync(async (req, res) => {
|
||||
const filetype = req.query.filetype
|
||||
|
||||
const currentUser = req.currentUser;
|
||||
const payload = await Imaging_ordersDBApi.findAll(
|
||||
req.query, { currentUser }
|
||||
);
|
||||
if (filetype && filetype === 'csv') {
|
||||
const fields = ['id','body_part','clinical_indication',
|
||||
|
||||
|
||||
'ordered_datetime',
|
||||
];
|
||||
const opts = { fields };
|
||||
try {
|
||||
const csv = parse(payload.rows, opts);
|
||||
res.status(200).attachment(csv);
|
||||
res.send(csv)
|
||||
|
||||
} catch (err) {
|
||||
console.error(err);
|
||||
}
|
||||
} else {
|
||||
res.status(200).send(payload);
|
||||
}
|
||||
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/imaging_orders/count:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Imaging_orders]
|
||||
* summary: Count all imaging_orders
|
||||
* description: Count all imaging_orders
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Imaging_orders count successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Imaging_orders"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Data not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/count', wrapAsync(async (req, res) => {
|
||||
|
||||
const currentUser = req.currentUser;
|
||||
const payload = await Imaging_ordersDBApi.findAll(
|
||||
req.query,
|
||||
null,
|
||||
{ countOnly: true, currentUser }
|
||||
);
|
||||
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/imaging_orders/autocomplete:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Imaging_orders]
|
||||
* summary: Find all imaging_orders that match search criteria
|
||||
* description: Find all imaging_orders that match search criteria
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Imaging_orders list successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Imaging_orders"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Data not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/autocomplete', async (req, res) => {
|
||||
|
||||
const payload = await Imaging_ordersDBApi.findAllAutocomplete(
|
||||
req.query.query,
|
||||
req.query.limit,
|
||||
req.query.offset,
|
||||
|
||||
);
|
||||
|
||||
res.status(200).send(payload);
|
||||
});
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/imaging_orders/{id}:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Imaging_orders]
|
||||
* summary: Get selected item
|
||||
* description: Get selected item
|
||||
* parameters:
|
||||
* - in: path
|
||||
* name: id
|
||||
* description: ID of item to get
|
||||
* required: true
|
||||
* schema:
|
||||
* type: string
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Selected item successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Imaging_orders"
|
||||
* 400:
|
||||
* description: Invalid ID supplied
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Item not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/:id', wrapAsync(async (req, res) => {
|
||||
const payload = await Imaging_ordersDBApi.findBy(
|
||||
{ id: req.params.id },
|
||||
);
|
||||
|
||||
|
||||
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
router.use('/', require('../helpers').commonErrorHandler);
|
||||
|
||||
module.exports = router;
|
||||
433
backend/src/routes/imaging_reports.js
Normal file
433
backend/src/routes/imaging_reports.js
Normal file
@ -0,0 +1,433 @@
|
||||
|
||||
const express = require('express');
|
||||
|
||||
const Imaging_reportsService = require('../services/imaging_reports');
|
||||
const Imaging_reportsDBApi = require('../db/api/imaging_reports');
|
||||
const wrapAsync = require('../helpers').wrapAsync;
|
||||
|
||||
|
||||
const router = express.Router();
|
||||
|
||||
const { parse } = require('json2csv');
|
||||
|
||||
|
||||
const {
|
||||
checkCrudPermissions,
|
||||
} = require('../middlewares/check-permissions');
|
||||
|
||||
router.use(checkCrudPermissions('imaging_reports'));
|
||||
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* components:
|
||||
* schemas:
|
||||
* Imaging_reports:
|
||||
* type: object
|
||||
* properties:
|
||||
|
||||
* findings:
|
||||
* type: string
|
||||
* default: findings
|
||||
* impression:
|
||||
* type: string
|
||||
* default: impression
|
||||
|
||||
|
||||
|
||||
*
|
||||
*/
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* tags:
|
||||
* name: Imaging_reports
|
||||
* description: The Imaging_reports managing API
|
||||
*/
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/imaging_reports:
|
||||
* post:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Imaging_reports]
|
||||
* summary: Add new item
|
||||
* description: Add new item
|
||||
* requestBody:
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* data:
|
||||
* description: Data of the updated item
|
||||
* type: object
|
||||
* $ref: "#/components/schemas/Imaging_reports"
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The item was successfully added
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Imaging_reports"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 405:
|
||||
* description: Invalid input data
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.post('/', wrapAsync(async (req, res) => {
|
||||
const referer = req.headers.referer || `${req.protocol}://${req.hostname}${req.originalUrl}`;
|
||||
const link = new URL(referer);
|
||||
await Imaging_reportsService.create(req.body.data, req.currentUser, true, link.host);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/budgets/bulk-import:
|
||||
* post:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Imaging_reports]
|
||||
* summary: Bulk import items
|
||||
* description: Bulk import items
|
||||
* requestBody:
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* data:
|
||||
* description: Data of the updated items
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Imaging_reports"
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The items were successfully imported
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Imaging_reports"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 405:
|
||||
* description: Invalid input data
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*
|
||||
*/
|
||||
router.post('/bulk-import', wrapAsync(async (req, res) => {
|
||||
const referer = req.headers.referer || `${req.protocol}://${req.hostname}${req.originalUrl}`;
|
||||
const link = new URL(referer);
|
||||
await Imaging_reportsService.bulkImport(req, res, true, link.host);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/imaging_reports/{id}:
|
||||
* put:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Imaging_reports]
|
||||
* summary: Update the data of the selected item
|
||||
* description: Update the data of the selected item
|
||||
* parameters:
|
||||
* - in: path
|
||||
* name: id
|
||||
* description: Item ID to update
|
||||
* required: true
|
||||
* schema:
|
||||
* type: string
|
||||
* requestBody:
|
||||
* description: Set new item data
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* id:
|
||||
* description: ID of the updated item
|
||||
* type: string
|
||||
* data:
|
||||
* description: Data of the updated item
|
||||
* type: object
|
||||
* $ref: "#/components/schemas/Imaging_reports"
|
||||
* required:
|
||||
* - id
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The item data was successfully updated
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Imaging_reports"
|
||||
* 400:
|
||||
* description: Invalid ID supplied
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Item not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.put('/:id', wrapAsync(async (req, res) => {
|
||||
await Imaging_reportsService.update(req.body.data, req.body.id, req.currentUser);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/imaging_reports/{id}:
|
||||
* delete:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Imaging_reports]
|
||||
* summary: Delete the selected item
|
||||
* description: Delete the selected item
|
||||
* parameters:
|
||||
* - in: path
|
||||
* name: id
|
||||
* description: Item ID to delete
|
||||
* required: true
|
||||
* schema:
|
||||
* type: string
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The item was successfully deleted
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Imaging_reports"
|
||||
* 400:
|
||||
* description: Invalid ID supplied
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Item not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.delete('/:id', wrapAsync(async (req, res) => {
|
||||
await Imaging_reportsService.remove(req.params.id, req.currentUser);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/imaging_reports/deleteByIds:
|
||||
* post:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Imaging_reports]
|
||||
* summary: Delete the selected item list
|
||||
* description: Delete the selected item list
|
||||
* requestBody:
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* ids:
|
||||
* description: IDs of the updated items
|
||||
* type: array
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The items was successfully deleted
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Imaging_reports"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Items not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.post('/deleteByIds', wrapAsync(async (req, res) => {
|
||||
await Imaging_reportsService.deleteByIds(req.body.data, req.currentUser);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/imaging_reports:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Imaging_reports]
|
||||
* summary: Get all imaging_reports
|
||||
* description: Get all imaging_reports
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Imaging_reports list successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Imaging_reports"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Data not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/', wrapAsync(async (req, res) => {
|
||||
const filetype = req.query.filetype
|
||||
|
||||
const currentUser = req.currentUser;
|
||||
const payload = await Imaging_reportsDBApi.findAll(
|
||||
req.query, { currentUser }
|
||||
);
|
||||
if (filetype && filetype === 'csv') {
|
||||
const fields = ['id','findings','impression',
|
||||
|
||||
|
||||
'performed_datetime','reported_datetime',
|
||||
];
|
||||
const opts = { fields };
|
||||
try {
|
||||
const csv = parse(payload.rows, opts);
|
||||
res.status(200).attachment(csv);
|
||||
res.send(csv)
|
||||
|
||||
} catch (err) {
|
||||
console.error(err);
|
||||
}
|
||||
} else {
|
||||
res.status(200).send(payload);
|
||||
}
|
||||
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/imaging_reports/count:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Imaging_reports]
|
||||
* summary: Count all imaging_reports
|
||||
* description: Count all imaging_reports
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Imaging_reports count successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Imaging_reports"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Data not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/count', wrapAsync(async (req, res) => {
|
||||
|
||||
const currentUser = req.currentUser;
|
||||
const payload = await Imaging_reportsDBApi.findAll(
|
||||
req.query,
|
||||
null,
|
||||
{ countOnly: true, currentUser }
|
||||
);
|
||||
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/imaging_reports/autocomplete:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Imaging_reports]
|
||||
* summary: Find all imaging_reports that match search criteria
|
||||
* description: Find all imaging_reports that match search criteria
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Imaging_reports list successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Imaging_reports"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Data not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/autocomplete', async (req, res) => {
|
||||
|
||||
const payload = await Imaging_reportsDBApi.findAllAutocomplete(
|
||||
req.query.query,
|
||||
req.query.limit,
|
||||
req.query.offset,
|
||||
|
||||
);
|
||||
|
||||
res.status(200).send(payload);
|
||||
});
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/imaging_reports/{id}:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Imaging_reports]
|
||||
* summary: Get selected item
|
||||
* description: Get selected item
|
||||
* parameters:
|
||||
* - in: path
|
||||
* name: id
|
||||
* description: ID of item to get
|
||||
* required: true
|
||||
* schema:
|
||||
* type: string
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Selected item successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Imaging_reports"
|
||||
* 400:
|
||||
* description: Invalid ID supplied
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Item not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/:id', wrapAsync(async (req, res) => {
|
||||
const payload = await Imaging_reportsDBApi.findBy(
|
||||
{ id: req.params.id },
|
||||
);
|
||||
|
||||
|
||||
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
router.use('/', require('../helpers').commonErrorHandler);
|
||||
|
||||
module.exports = router;
|
||||
431
backend/src/routes/lab_orders.js
Normal file
431
backend/src/routes/lab_orders.js
Normal file
@ -0,0 +1,431 @@
|
||||
|
||||
const express = require('express');
|
||||
|
||||
const Lab_ordersService = require('../services/lab_orders');
|
||||
const Lab_ordersDBApi = require('../db/api/lab_orders');
|
||||
const wrapAsync = require('../helpers').wrapAsync;
|
||||
|
||||
|
||||
const router = express.Router();
|
||||
|
||||
const { parse } = require('json2csv');
|
||||
|
||||
|
||||
const {
|
||||
checkCrudPermissions,
|
||||
} = require('../middlewares/check-permissions');
|
||||
|
||||
router.use(checkCrudPermissions('lab_orders'));
|
||||
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* components:
|
||||
* schemas:
|
||||
* Lab_orders:
|
||||
* type: object
|
||||
* properties:
|
||||
|
||||
* notes:
|
||||
* type: string
|
||||
* default: notes
|
||||
|
||||
|
||||
|
||||
*
|
||||
*
|
||||
*/
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* tags:
|
||||
* name: Lab_orders
|
||||
* description: The Lab_orders managing API
|
||||
*/
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/lab_orders:
|
||||
* post:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Lab_orders]
|
||||
* summary: Add new item
|
||||
* description: Add new item
|
||||
* requestBody:
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* data:
|
||||
* description: Data of the updated item
|
||||
* type: object
|
||||
* $ref: "#/components/schemas/Lab_orders"
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The item was successfully added
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Lab_orders"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 405:
|
||||
* description: Invalid input data
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.post('/', wrapAsync(async (req, res) => {
|
||||
const referer = req.headers.referer || `${req.protocol}://${req.hostname}${req.originalUrl}`;
|
||||
const link = new URL(referer);
|
||||
await Lab_ordersService.create(req.body.data, req.currentUser, true, link.host);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/budgets/bulk-import:
|
||||
* post:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Lab_orders]
|
||||
* summary: Bulk import items
|
||||
* description: Bulk import items
|
||||
* requestBody:
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* data:
|
||||
* description: Data of the updated items
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Lab_orders"
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The items were successfully imported
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Lab_orders"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 405:
|
||||
* description: Invalid input data
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*
|
||||
*/
|
||||
router.post('/bulk-import', wrapAsync(async (req, res) => {
|
||||
const referer = req.headers.referer || `${req.protocol}://${req.hostname}${req.originalUrl}`;
|
||||
const link = new URL(referer);
|
||||
await Lab_ordersService.bulkImport(req, res, true, link.host);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/lab_orders/{id}:
|
||||
* put:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Lab_orders]
|
||||
* summary: Update the data of the selected item
|
||||
* description: Update the data of the selected item
|
||||
* parameters:
|
||||
* - in: path
|
||||
* name: id
|
||||
* description: Item ID to update
|
||||
* required: true
|
||||
* schema:
|
||||
* type: string
|
||||
* requestBody:
|
||||
* description: Set new item data
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* id:
|
||||
* description: ID of the updated item
|
||||
* type: string
|
||||
* data:
|
||||
* description: Data of the updated item
|
||||
* type: object
|
||||
* $ref: "#/components/schemas/Lab_orders"
|
||||
* required:
|
||||
* - id
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The item data was successfully updated
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Lab_orders"
|
||||
* 400:
|
||||
* description: Invalid ID supplied
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Item not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.put('/:id', wrapAsync(async (req, res) => {
|
||||
await Lab_ordersService.update(req.body.data, req.body.id, req.currentUser);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/lab_orders/{id}:
|
||||
* delete:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Lab_orders]
|
||||
* summary: Delete the selected item
|
||||
* description: Delete the selected item
|
||||
* parameters:
|
||||
* - in: path
|
||||
* name: id
|
||||
* description: Item ID to delete
|
||||
* required: true
|
||||
* schema:
|
||||
* type: string
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The item was successfully deleted
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Lab_orders"
|
||||
* 400:
|
||||
* description: Invalid ID supplied
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Item not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.delete('/:id', wrapAsync(async (req, res) => {
|
||||
await Lab_ordersService.remove(req.params.id, req.currentUser);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/lab_orders/deleteByIds:
|
||||
* post:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Lab_orders]
|
||||
* summary: Delete the selected item list
|
||||
* description: Delete the selected item list
|
||||
* requestBody:
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* ids:
|
||||
* description: IDs of the updated items
|
||||
* type: array
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The items was successfully deleted
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Lab_orders"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Items not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.post('/deleteByIds', wrapAsync(async (req, res) => {
|
||||
await Lab_ordersService.deleteByIds(req.body.data, req.currentUser);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/lab_orders:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Lab_orders]
|
||||
* summary: Get all lab_orders
|
||||
* description: Get all lab_orders
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Lab_orders list successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Lab_orders"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Data not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/', wrapAsync(async (req, res) => {
|
||||
const filetype = req.query.filetype
|
||||
|
||||
const currentUser = req.currentUser;
|
||||
const payload = await Lab_ordersDBApi.findAll(
|
||||
req.query, { currentUser }
|
||||
);
|
||||
if (filetype && filetype === 'csv') {
|
||||
const fields = ['id','notes',
|
||||
|
||||
|
||||
'ordered_datetime',
|
||||
];
|
||||
const opts = { fields };
|
||||
try {
|
||||
const csv = parse(payload.rows, opts);
|
||||
res.status(200).attachment(csv);
|
||||
res.send(csv)
|
||||
|
||||
} catch (err) {
|
||||
console.error(err);
|
||||
}
|
||||
} else {
|
||||
res.status(200).send(payload);
|
||||
}
|
||||
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/lab_orders/count:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Lab_orders]
|
||||
* summary: Count all lab_orders
|
||||
* description: Count all lab_orders
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Lab_orders count successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Lab_orders"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Data not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/count', wrapAsync(async (req, res) => {
|
||||
|
||||
const currentUser = req.currentUser;
|
||||
const payload = await Lab_ordersDBApi.findAll(
|
||||
req.query,
|
||||
null,
|
||||
{ countOnly: true, currentUser }
|
||||
);
|
||||
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/lab_orders/autocomplete:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Lab_orders]
|
||||
* summary: Find all lab_orders that match search criteria
|
||||
* description: Find all lab_orders that match search criteria
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Lab_orders list successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Lab_orders"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Data not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/autocomplete', async (req, res) => {
|
||||
|
||||
const payload = await Lab_ordersDBApi.findAllAutocomplete(
|
||||
req.query.query,
|
||||
req.query.limit,
|
||||
req.query.offset,
|
||||
|
||||
);
|
||||
|
||||
res.status(200).send(payload);
|
||||
});
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/lab_orders/{id}:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Lab_orders]
|
||||
* summary: Get selected item
|
||||
* description: Get selected item
|
||||
* parameters:
|
||||
* - in: path
|
||||
* name: id
|
||||
* description: ID of item to get
|
||||
* required: true
|
||||
* schema:
|
||||
* type: string
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Selected item successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Lab_orders"
|
||||
* 400:
|
||||
* description: Invalid ID supplied
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Item not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/:id', wrapAsync(async (req, res) => {
|
||||
const payload = await Lab_ordersDBApi.findBy(
|
||||
{ id: req.params.id },
|
||||
);
|
||||
|
||||
|
||||
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
router.use('/', require('../helpers').commonErrorHandler);
|
||||
|
||||
module.exports = router;
|
||||
442
backend/src/routes/lab_result_items.js
Normal file
442
backend/src/routes/lab_result_items.js
Normal file
@ -0,0 +1,442 @@
|
||||
|
||||
const express = require('express');
|
||||
|
||||
const Lab_result_itemsService = require('../services/lab_result_items');
|
||||
const Lab_result_itemsDBApi = require('../db/api/lab_result_items');
|
||||
const wrapAsync = require('../helpers').wrapAsync;
|
||||
|
||||
|
||||
const router = express.Router();
|
||||
|
||||
const { parse } = require('json2csv');
|
||||
|
||||
|
||||
const {
|
||||
checkCrudPermissions,
|
||||
} = require('../middlewares/check-permissions');
|
||||
|
||||
router.use(checkCrudPermissions('lab_result_items'));
|
||||
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* components:
|
||||
* schemas:
|
||||
* Lab_result_items:
|
||||
* type: object
|
||||
* properties:
|
||||
|
||||
* test_name:
|
||||
* type: string
|
||||
* default: test_name
|
||||
* value_text:
|
||||
* type: string
|
||||
* default: value_text
|
||||
* unit:
|
||||
* type: string
|
||||
* default: unit
|
||||
* reference_range:
|
||||
* type: string
|
||||
* default: reference_range
|
||||
|
||||
|
||||
* value_numeric:
|
||||
* type: integer
|
||||
* format: int64
|
||||
|
||||
*
|
||||
*/
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* tags:
|
||||
* name: Lab_result_items
|
||||
* description: The Lab_result_items managing API
|
||||
*/
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/lab_result_items:
|
||||
* post:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Lab_result_items]
|
||||
* summary: Add new item
|
||||
* description: Add new item
|
||||
* requestBody:
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* data:
|
||||
* description: Data of the updated item
|
||||
* type: object
|
||||
* $ref: "#/components/schemas/Lab_result_items"
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The item was successfully added
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Lab_result_items"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 405:
|
||||
* description: Invalid input data
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.post('/', wrapAsync(async (req, res) => {
|
||||
const referer = req.headers.referer || `${req.protocol}://${req.hostname}${req.originalUrl}`;
|
||||
const link = new URL(referer);
|
||||
await Lab_result_itemsService.create(req.body.data, req.currentUser, true, link.host);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/budgets/bulk-import:
|
||||
* post:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Lab_result_items]
|
||||
* summary: Bulk import items
|
||||
* description: Bulk import items
|
||||
* requestBody:
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* data:
|
||||
* description: Data of the updated items
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Lab_result_items"
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The items were successfully imported
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Lab_result_items"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 405:
|
||||
* description: Invalid input data
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*
|
||||
*/
|
||||
router.post('/bulk-import', wrapAsync(async (req, res) => {
|
||||
const referer = req.headers.referer || `${req.protocol}://${req.hostname}${req.originalUrl}`;
|
||||
const link = new URL(referer);
|
||||
await Lab_result_itemsService.bulkImport(req, res, true, link.host);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/lab_result_items/{id}:
|
||||
* put:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Lab_result_items]
|
||||
* summary: Update the data of the selected item
|
||||
* description: Update the data of the selected item
|
||||
* parameters:
|
||||
* - in: path
|
||||
* name: id
|
||||
* description: Item ID to update
|
||||
* required: true
|
||||
* schema:
|
||||
* type: string
|
||||
* requestBody:
|
||||
* description: Set new item data
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* id:
|
||||
* description: ID of the updated item
|
||||
* type: string
|
||||
* data:
|
||||
* description: Data of the updated item
|
||||
* type: object
|
||||
* $ref: "#/components/schemas/Lab_result_items"
|
||||
* required:
|
||||
* - id
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The item data was successfully updated
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Lab_result_items"
|
||||
* 400:
|
||||
* description: Invalid ID supplied
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Item not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.put('/:id', wrapAsync(async (req, res) => {
|
||||
await Lab_result_itemsService.update(req.body.data, req.body.id, req.currentUser);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/lab_result_items/{id}:
|
||||
* delete:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Lab_result_items]
|
||||
* summary: Delete the selected item
|
||||
* description: Delete the selected item
|
||||
* parameters:
|
||||
* - in: path
|
||||
* name: id
|
||||
* description: Item ID to delete
|
||||
* required: true
|
||||
* schema:
|
||||
* type: string
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The item was successfully deleted
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Lab_result_items"
|
||||
* 400:
|
||||
* description: Invalid ID supplied
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Item not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.delete('/:id', wrapAsync(async (req, res) => {
|
||||
await Lab_result_itemsService.remove(req.params.id, req.currentUser);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/lab_result_items/deleteByIds:
|
||||
* post:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Lab_result_items]
|
||||
* summary: Delete the selected item list
|
||||
* description: Delete the selected item list
|
||||
* requestBody:
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* ids:
|
||||
* description: IDs of the updated items
|
||||
* type: array
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The items was successfully deleted
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Lab_result_items"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Items not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.post('/deleteByIds', wrapAsync(async (req, res) => {
|
||||
await Lab_result_itemsService.deleteByIds(req.body.data, req.currentUser);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/lab_result_items:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Lab_result_items]
|
||||
* summary: Get all lab_result_items
|
||||
* description: Get all lab_result_items
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Lab_result_items list successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Lab_result_items"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Data not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/', wrapAsync(async (req, res) => {
|
||||
const filetype = req.query.filetype
|
||||
|
||||
const currentUser = req.currentUser;
|
||||
const payload = await Lab_result_itemsDBApi.findAll(
|
||||
req.query, { currentUser }
|
||||
);
|
||||
if (filetype && filetype === 'csv') {
|
||||
const fields = ['id','test_name','value_text','unit','reference_range',
|
||||
|
||||
'value_numeric',
|
||||
|
||||
];
|
||||
const opts = { fields };
|
||||
try {
|
||||
const csv = parse(payload.rows, opts);
|
||||
res.status(200).attachment(csv);
|
||||
res.send(csv)
|
||||
|
||||
} catch (err) {
|
||||
console.error(err);
|
||||
}
|
||||
} else {
|
||||
res.status(200).send(payload);
|
||||
}
|
||||
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/lab_result_items/count:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Lab_result_items]
|
||||
* summary: Count all lab_result_items
|
||||
* description: Count all lab_result_items
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Lab_result_items count successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Lab_result_items"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Data not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/count', wrapAsync(async (req, res) => {
|
||||
|
||||
const currentUser = req.currentUser;
|
||||
const payload = await Lab_result_itemsDBApi.findAll(
|
||||
req.query,
|
||||
null,
|
||||
{ countOnly: true, currentUser }
|
||||
);
|
||||
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/lab_result_items/autocomplete:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Lab_result_items]
|
||||
* summary: Find all lab_result_items that match search criteria
|
||||
* description: Find all lab_result_items that match search criteria
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Lab_result_items list successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Lab_result_items"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Data not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/autocomplete', async (req, res) => {
|
||||
|
||||
const payload = await Lab_result_itemsDBApi.findAllAutocomplete(
|
||||
req.query.query,
|
||||
req.query.limit,
|
||||
req.query.offset,
|
||||
|
||||
);
|
||||
|
||||
res.status(200).send(payload);
|
||||
});
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/lab_result_items/{id}:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Lab_result_items]
|
||||
* summary: Get selected item
|
||||
* description: Get selected item
|
||||
* parameters:
|
||||
* - in: path
|
||||
* name: id
|
||||
* description: ID of item to get
|
||||
* required: true
|
||||
* schema:
|
||||
* type: string
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Selected item successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Lab_result_items"
|
||||
* 400:
|
||||
* description: Invalid ID supplied
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Item not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/:id', wrapAsync(async (req, res) => {
|
||||
const payload = await Lab_result_itemsDBApi.findBy(
|
||||
{ id: req.params.id },
|
||||
);
|
||||
|
||||
|
||||
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
router.use('/', require('../helpers').commonErrorHandler);
|
||||
|
||||
module.exports = router;
|
||||
433
backend/src/routes/lab_results.js
Normal file
433
backend/src/routes/lab_results.js
Normal file
@ -0,0 +1,433 @@
|
||||
|
||||
const express = require('express');
|
||||
|
||||
const Lab_resultsService = require('../services/lab_results');
|
||||
const Lab_resultsDBApi = require('../db/api/lab_results');
|
||||
const wrapAsync = require('../helpers').wrapAsync;
|
||||
|
||||
|
||||
const router = express.Router();
|
||||
|
||||
const { parse } = require('json2csv');
|
||||
|
||||
|
||||
const {
|
||||
checkCrudPermissions,
|
||||
} = require('../middlewares/check-permissions');
|
||||
|
||||
router.use(checkCrudPermissions('lab_results'));
|
||||
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* components:
|
||||
* schemas:
|
||||
* Lab_results:
|
||||
* type: object
|
||||
* properties:
|
||||
|
||||
* panel_name:
|
||||
* type: string
|
||||
* default: panel_name
|
||||
* summary:
|
||||
* type: string
|
||||
* default: summary
|
||||
|
||||
|
||||
|
||||
*
|
||||
*/
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* tags:
|
||||
* name: Lab_results
|
||||
* description: The Lab_results managing API
|
||||
*/
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/lab_results:
|
||||
* post:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Lab_results]
|
||||
* summary: Add new item
|
||||
* description: Add new item
|
||||
* requestBody:
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* data:
|
||||
* description: Data of the updated item
|
||||
* type: object
|
||||
* $ref: "#/components/schemas/Lab_results"
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The item was successfully added
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Lab_results"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 405:
|
||||
* description: Invalid input data
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.post('/', wrapAsync(async (req, res) => {
|
||||
const referer = req.headers.referer || `${req.protocol}://${req.hostname}${req.originalUrl}`;
|
||||
const link = new URL(referer);
|
||||
await Lab_resultsService.create(req.body.data, req.currentUser, true, link.host);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/budgets/bulk-import:
|
||||
* post:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Lab_results]
|
||||
* summary: Bulk import items
|
||||
* description: Bulk import items
|
||||
* requestBody:
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* data:
|
||||
* description: Data of the updated items
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Lab_results"
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The items were successfully imported
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Lab_results"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 405:
|
||||
* description: Invalid input data
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*
|
||||
*/
|
||||
router.post('/bulk-import', wrapAsync(async (req, res) => {
|
||||
const referer = req.headers.referer || `${req.protocol}://${req.hostname}${req.originalUrl}`;
|
||||
const link = new URL(referer);
|
||||
await Lab_resultsService.bulkImport(req, res, true, link.host);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/lab_results/{id}:
|
||||
* put:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Lab_results]
|
||||
* summary: Update the data of the selected item
|
||||
* description: Update the data of the selected item
|
||||
* parameters:
|
||||
* - in: path
|
||||
* name: id
|
||||
* description: Item ID to update
|
||||
* required: true
|
||||
* schema:
|
||||
* type: string
|
||||
* requestBody:
|
||||
* description: Set new item data
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* id:
|
||||
* description: ID of the updated item
|
||||
* type: string
|
||||
* data:
|
||||
* description: Data of the updated item
|
||||
* type: object
|
||||
* $ref: "#/components/schemas/Lab_results"
|
||||
* required:
|
||||
* - id
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The item data was successfully updated
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Lab_results"
|
||||
* 400:
|
||||
* description: Invalid ID supplied
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Item not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.put('/:id', wrapAsync(async (req, res) => {
|
||||
await Lab_resultsService.update(req.body.data, req.body.id, req.currentUser);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/lab_results/{id}:
|
||||
* delete:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Lab_results]
|
||||
* summary: Delete the selected item
|
||||
* description: Delete the selected item
|
||||
* parameters:
|
||||
* - in: path
|
||||
* name: id
|
||||
* description: Item ID to delete
|
||||
* required: true
|
||||
* schema:
|
||||
* type: string
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The item was successfully deleted
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Lab_results"
|
||||
* 400:
|
||||
* description: Invalid ID supplied
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Item not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.delete('/:id', wrapAsync(async (req, res) => {
|
||||
await Lab_resultsService.remove(req.params.id, req.currentUser);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/lab_results/deleteByIds:
|
||||
* post:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Lab_results]
|
||||
* summary: Delete the selected item list
|
||||
* description: Delete the selected item list
|
||||
* requestBody:
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* ids:
|
||||
* description: IDs of the updated items
|
||||
* type: array
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The items was successfully deleted
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Lab_results"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Items not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.post('/deleteByIds', wrapAsync(async (req, res) => {
|
||||
await Lab_resultsService.deleteByIds(req.body.data, req.currentUser);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/lab_results:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Lab_results]
|
||||
* summary: Get all lab_results
|
||||
* description: Get all lab_results
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Lab_results list successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Lab_results"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Data not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/', wrapAsync(async (req, res) => {
|
||||
const filetype = req.query.filetype
|
||||
|
||||
const currentUser = req.currentUser;
|
||||
const payload = await Lab_resultsDBApi.findAll(
|
||||
req.query, { currentUser }
|
||||
);
|
||||
if (filetype && filetype === 'csv') {
|
||||
const fields = ['id','panel_name','summary',
|
||||
|
||||
|
||||
'result_datetime',
|
||||
];
|
||||
const opts = { fields };
|
||||
try {
|
||||
const csv = parse(payload.rows, opts);
|
||||
res.status(200).attachment(csv);
|
||||
res.send(csv)
|
||||
|
||||
} catch (err) {
|
||||
console.error(err);
|
||||
}
|
||||
} else {
|
||||
res.status(200).send(payload);
|
||||
}
|
||||
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/lab_results/count:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Lab_results]
|
||||
* summary: Count all lab_results
|
||||
* description: Count all lab_results
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Lab_results count successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Lab_results"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Data not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/count', wrapAsync(async (req, res) => {
|
||||
|
||||
const currentUser = req.currentUser;
|
||||
const payload = await Lab_resultsDBApi.findAll(
|
||||
req.query,
|
||||
null,
|
||||
{ countOnly: true, currentUser }
|
||||
);
|
||||
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/lab_results/autocomplete:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Lab_results]
|
||||
* summary: Find all lab_results that match search criteria
|
||||
* description: Find all lab_results that match search criteria
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Lab_results list successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Lab_results"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Data not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/autocomplete', async (req, res) => {
|
||||
|
||||
const payload = await Lab_resultsDBApi.findAllAutocomplete(
|
||||
req.query.query,
|
||||
req.query.limit,
|
||||
req.query.offset,
|
||||
|
||||
);
|
||||
|
||||
res.status(200).send(payload);
|
||||
});
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/lab_results/{id}:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Lab_results]
|
||||
* summary: Get selected item
|
||||
* description: Get selected item
|
||||
* parameters:
|
||||
* - in: path
|
||||
* name: id
|
||||
* description: ID of item to get
|
||||
* required: true
|
||||
* schema:
|
||||
* type: string
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Selected item successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Lab_results"
|
||||
* 400:
|
||||
* description: Invalid ID supplied
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Item not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/:id', wrapAsync(async (req, res) => {
|
||||
const payload = await Lab_resultsDBApi.findBy(
|
||||
{ id: req.params.id },
|
||||
);
|
||||
|
||||
|
||||
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
router.use('/', require('../helpers').commonErrorHandler);
|
||||
|
||||
module.exports = router;
|
||||
430
backend/src/routes/medication_administrations.js
Normal file
430
backend/src/routes/medication_administrations.js
Normal file
@ -0,0 +1,430 @@
|
||||
|
||||
const express = require('express');
|
||||
|
||||
const Medication_administrationsService = require('../services/medication_administrations');
|
||||
const Medication_administrationsDBApi = require('../db/api/medication_administrations');
|
||||
const wrapAsync = require('../helpers').wrapAsync;
|
||||
|
||||
|
||||
const router = express.Router();
|
||||
|
||||
const { parse } = require('json2csv');
|
||||
|
||||
|
||||
const {
|
||||
checkCrudPermissions,
|
||||
} = require('../middlewares/check-permissions');
|
||||
|
||||
router.use(checkCrudPermissions('medication_administrations'));
|
||||
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* components:
|
||||
* schemas:
|
||||
* Medication_administrations:
|
||||
* type: object
|
||||
* properties:
|
||||
|
||||
* remarks:
|
||||
* type: string
|
||||
* default: remarks
|
||||
|
||||
|
||||
|
||||
*
|
||||
*/
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* tags:
|
||||
* name: Medication_administrations
|
||||
* description: The Medication_administrations managing API
|
||||
*/
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/medication_administrations:
|
||||
* post:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Medication_administrations]
|
||||
* summary: Add new item
|
||||
* description: Add new item
|
||||
* requestBody:
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* data:
|
||||
* description: Data of the updated item
|
||||
* type: object
|
||||
* $ref: "#/components/schemas/Medication_administrations"
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The item was successfully added
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Medication_administrations"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 405:
|
||||
* description: Invalid input data
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.post('/', wrapAsync(async (req, res) => {
|
||||
const referer = req.headers.referer || `${req.protocol}://${req.hostname}${req.originalUrl}`;
|
||||
const link = new URL(referer);
|
||||
await Medication_administrationsService.create(req.body.data, req.currentUser, true, link.host);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/budgets/bulk-import:
|
||||
* post:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Medication_administrations]
|
||||
* summary: Bulk import items
|
||||
* description: Bulk import items
|
||||
* requestBody:
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* data:
|
||||
* description: Data of the updated items
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Medication_administrations"
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The items were successfully imported
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Medication_administrations"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 405:
|
||||
* description: Invalid input data
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*
|
||||
*/
|
||||
router.post('/bulk-import', wrapAsync(async (req, res) => {
|
||||
const referer = req.headers.referer || `${req.protocol}://${req.hostname}${req.originalUrl}`;
|
||||
const link = new URL(referer);
|
||||
await Medication_administrationsService.bulkImport(req, res, true, link.host);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/medication_administrations/{id}:
|
||||
* put:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Medication_administrations]
|
||||
* summary: Update the data of the selected item
|
||||
* description: Update the data of the selected item
|
||||
* parameters:
|
||||
* - in: path
|
||||
* name: id
|
||||
* description: Item ID to update
|
||||
* required: true
|
||||
* schema:
|
||||
* type: string
|
||||
* requestBody:
|
||||
* description: Set new item data
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* id:
|
||||
* description: ID of the updated item
|
||||
* type: string
|
||||
* data:
|
||||
* description: Data of the updated item
|
||||
* type: object
|
||||
* $ref: "#/components/schemas/Medication_administrations"
|
||||
* required:
|
||||
* - id
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The item data was successfully updated
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Medication_administrations"
|
||||
* 400:
|
||||
* description: Invalid ID supplied
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Item not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.put('/:id', wrapAsync(async (req, res) => {
|
||||
await Medication_administrationsService.update(req.body.data, req.body.id, req.currentUser);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/medication_administrations/{id}:
|
||||
* delete:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Medication_administrations]
|
||||
* summary: Delete the selected item
|
||||
* description: Delete the selected item
|
||||
* parameters:
|
||||
* - in: path
|
||||
* name: id
|
||||
* description: Item ID to delete
|
||||
* required: true
|
||||
* schema:
|
||||
* type: string
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The item was successfully deleted
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Medication_administrations"
|
||||
* 400:
|
||||
* description: Invalid ID supplied
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Item not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.delete('/:id', wrapAsync(async (req, res) => {
|
||||
await Medication_administrationsService.remove(req.params.id, req.currentUser);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/medication_administrations/deleteByIds:
|
||||
* post:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Medication_administrations]
|
||||
* summary: Delete the selected item list
|
||||
* description: Delete the selected item list
|
||||
* requestBody:
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* ids:
|
||||
* description: IDs of the updated items
|
||||
* type: array
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The items was successfully deleted
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Medication_administrations"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Items not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.post('/deleteByIds', wrapAsync(async (req, res) => {
|
||||
await Medication_administrationsService.deleteByIds(req.body.data, req.currentUser);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/medication_administrations:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Medication_administrations]
|
||||
* summary: Get all medication_administrations
|
||||
* description: Get all medication_administrations
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Medication_administrations list successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Medication_administrations"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Data not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/', wrapAsync(async (req, res) => {
|
||||
const filetype = req.query.filetype
|
||||
|
||||
const currentUser = req.currentUser;
|
||||
const payload = await Medication_administrationsDBApi.findAll(
|
||||
req.query, { currentUser }
|
||||
);
|
||||
if (filetype && filetype === 'csv') {
|
||||
const fields = ['id','remarks',
|
||||
|
||||
|
||||
'start_datetime','end_datetime',
|
||||
];
|
||||
const opts = { fields };
|
||||
try {
|
||||
const csv = parse(payload.rows, opts);
|
||||
res.status(200).attachment(csv);
|
||||
res.send(csv)
|
||||
|
||||
} catch (err) {
|
||||
console.error(err);
|
||||
}
|
||||
} else {
|
||||
res.status(200).send(payload);
|
||||
}
|
||||
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/medication_administrations/count:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Medication_administrations]
|
||||
* summary: Count all medication_administrations
|
||||
* description: Count all medication_administrations
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Medication_administrations count successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Medication_administrations"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Data not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/count', wrapAsync(async (req, res) => {
|
||||
|
||||
const currentUser = req.currentUser;
|
||||
const payload = await Medication_administrationsDBApi.findAll(
|
||||
req.query,
|
||||
null,
|
||||
{ countOnly: true, currentUser }
|
||||
);
|
||||
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/medication_administrations/autocomplete:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Medication_administrations]
|
||||
* summary: Find all medication_administrations that match search criteria
|
||||
* description: Find all medication_administrations that match search criteria
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Medication_administrations list successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Medication_administrations"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Data not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/autocomplete', async (req, res) => {
|
||||
|
||||
const payload = await Medication_administrationsDBApi.findAllAutocomplete(
|
||||
req.query.query,
|
||||
req.query.limit,
|
||||
req.query.offset,
|
||||
|
||||
);
|
||||
|
||||
res.status(200).send(payload);
|
||||
});
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/medication_administrations/{id}:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Medication_administrations]
|
||||
* summary: Get selected item
|
||||
* description: Get selected item
|
||||
* parameters:
|
||||
* - in: path
|
||||
* name: id
|
||||
* description: ID of item to get
|
||||
* required: true
|
||||
* schema:
|
||||
* type: string
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Selected item successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Medication_administrations"
|
||||
* 400:
|
||||
* description: Invalid ID supplied
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Item not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/:id', wrapAsync(async (req, res) => {
|
||||
const payload = await Medication_administrationsDBApi.findBy(
|
||||
{ id: req.params.id },
|
||||
);
|
||||
|
||||
|
||||
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
router.use('/', require('../helpers').commonErrorHandler);
|
||||
|
||||
module.exports = router;
|
||||
328
backend/src/routes/openai.js
Normal file
328
backend/src/routes/openai.js
Normal file
@ -0,0 +1,328 @@
|
||||
const express = require('express');
|
||||
const db = require('../db/models');
|
||||
const wrapAsync = require('../helpers').wrapAsync;
|
||||
const router = express.Router();
|
||||
const sjs = require('sequelize-json-schema');
|
||||
const { getWidget, askGpt } = require('../services/openai');
|
||||
const { LocalAIApi } = require('../ai/LocalAIApi');
|
||||
|
||||
const loadRolesModules = () => {
|
||||
try {
|
||||
return {
|
||||
RolesService: require('../services/roles'),
|
||||
RolesDBApi: require('../db/api/roles'),
|
||||
};
|
||||
} catch (error) {
|
||||
console.error('Roles modules are missing. Advanced roles are required for this endpoint.', error);
|
||||
const err = new Error('Roles modules are missing. Advanced roles are required for this endpoint.');
|
||||
err.originalError = error;
|
||||
throw err;
|
||||
}
|
||||
};
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/roles/roles-info/{infoId}:
|
||||
* delete:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Roles]
|
||||
* summary: Remove role information by ID
|
||||
* description: Remove specific role information by ID
|
||||
* parameters:
|
||||
* - in: path
|
||||
* name: infoId
|
||||
* description: ID of role information to remove
|
||||
* required: true
|
||||
* schema:
|
||||
* type: string
|
||||
* - in: query
|
||||
* name: userId
|
||||
* description: ID of the user
|
||||
* required: true
|
||||
* schema:
|
||||
* type: string
|
||||
* - in: query
|
||||
* name: key
|
||||
* description: Key of the role information to remove
|
||||
* required: true
|
||||
* schema:
|
||||
* type: string
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Role information successfully removed
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* type: object
|
||||
* properties:
|
||||
* user:
|
||||
* type: string
|
||||
* description: The user information
|
||||
* 400:
|
||||
* description: Invalid ID or key supplied
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Role not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
|
||||
router.delete(
|
||||
'/roles-info/:infoId',
|
||||
wrapAsync(async (req, res) => {
|
||||
const { RolesService } = loadRolesModules();
|
||||
const role = await RolesService.removeRoleInfoById(
|
||||
req.query.infoId,
|
||||
req.query.roleId,
|
||||
req.query.key,
|
||||
req.currentUser,
|
||||
);
|
||||
|
||||
res.status(200).send(role);
|
||||
}),
|
||||
);
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/roles/role-info/{roleId}:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Roles]
|
||||
* summary: Get role information by key
|
||||
* description: Get specific role information by key
|
||||
* parameters:
|
||||
* - in: path
|
||||
* name: roleId
|
||||
* description: ID of role to get information for
|
||||
* required: true
|
||||
* schema:
|
||||
* type: string
|
||||
* - in: query
|
||||
* name: key
|
||||
* description: Key of the role information to retrieve
|
||||
* required: true
|
||||
* schema:
|
||||
* type: string
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Role information successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* type: object
|
||||
* properties:
|
||||
* info:
|
||||
* type: string
|
||||
* description: The role information
|
||||
* 400:
|
||||
* description: Invalid ID or key supplied
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Role not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
|
||||
router.get(
|
||||
'/info-by-key',
|
||||
wrapAsync(async (req, res) => {
|
||||
const { RolesService, RolesDBApi } = loadRolesModules();
|
||||
const roleId = req.query.roleId;
|
||||
const key = req.query.key;
|
||||
const currentUser = req.currentUser;
|
||||
let info = await RolesService.getRoleInfoByKey(
|
||||
key,
|
||||
roleId,
|
||||
currentUser,
|
||||
);
|
||||
const role = await RolesDBApi.findBy({ id: roleId });
|
||||
if (!role?.role_customization) {
|
||||
await Promise.all(["pie", "bar"].map(async (e) => {
|
||||
const schema = await sjs.getSequelizeSchema(db.sequelize, {});
|
||||
const payload = {
|
||||
description: `Create some cool ${e} chart`,
|
||||
modelDefinition: schema.definitions,
|
||||
};
|
||||
const widgetId = await getWidget(payload, currentUser?.id, roleId);
|
||||
if (widgetId) {
|
||||
await RolesService.addRoleInfo(
|
||||
roleId,
|
||||
currentUser?.id,
|
||||
'widgets',
|
||||
widgetId,
|
||||
req.currentUser,
|
||||
);
|
||||
}
|
||||
}))
|
||||
info = await RolesService.getRoleInfoByKey(
|
||||
key,
|
||||
roleId,
|
||||
currentUser,
|
||||
);
|
||||
}
|
||||
res.status(200).send(info);
|
||||
}),
|
||||
);
|
||||
|
||||
router.post(
|
||||
'/create_widget',
|
||||
wrapAsync(async (req, res) => {
|
||||
const { RolesService } = loadRolesModules();
|
||||
const { description, userId, roleId } = req.body;
|
||||
|
||||
const currentUser = req.currentUser;
|
||||
const schema = await sjs.getSequelizeSchema(db.sequelize, {});
|
||||
const payload = {
|
||||
description,
|
||||
modelDefinition: schema.definitions,
|
||||
};
|
||||
|
||||
const widgetId = await getWidget(payload, userId, roleId);
|
||||
|
||||
if (widgetId) {
|
||||
await RolesService.addRoleInfo(
|
||||
roleId,
|
||||
userId,
|
||||
'widgets',
|
||||
widgetId,
|
||||
currentUser,
|
||||
);
|
||||
|
||||
return res.status(200).send(widgetId);
|
||||
} else {
|
||||
return res.status(400).send(widgetId);
|
||||
}
|
||||
}),
|
||||
);
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/openai/response:
|
||||
* post:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [OpenAI]
|
||||
* summary: Proxy a Responses API request
|
||||
* description: Sends the payload to the Flatlogic AI proxy and returns the response.
|
||||
* requestBody:
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* type: object
|
||||
* properties:
|
||||
* input:
|
||||
* type: array
|
||||
* description: List of messages with roles and content.
|
||||
* items:
|
||||
* type: object
|
||||
* properties:
|
||||
* role:
|
||||
* type: string
|
||||
* content:
|
||||
* type: string
|
||||
* options:
|
||||
* type: object
|
||||
* description: Optional polling controls.
|
||||
* properties:
|
||||
* poll_interval:
|
||||
* type: number
|
||||
* poll_timeout:
|
||||
* type: number
|
||||
* responses:
|
||||
* 200:
|
||||
* description: AI response received
|
||||
* 400:
|
||||
* description: Invalid request
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 502:
|
||||
* description: Proxy error
|
||||
*/
|
||||
router.post(
|
||||
'/response',
|
||||
wrapAsync(async (req, res) => {
|
||||
const body = req.body || {};
|
||||
const options = body.options || {};
|
||||
const payload = { ...body };
|
||||
delete payload.options;
|
||||
|
||||
const response = await LocalAIApi.createResponse(payload, options);
|
||||
|
||||
if (response.success) {
|
||||
return res.status(200).send(response);
|
||||
}
|
||||
|
||||
console.error('AI proxy error:', response);
|
||||
const status = response.error === 'input_missing' ? 400 : 502;
|
||||
return res.status(status).send(response);
|
||||
}),
|
||||
);
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/openai/ask:
|
||||
* post:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [OpenAI]
|
||||
* summary: Ask a question to ChatGPT
|
||||
* description: Send a question through the Flatlogic AI proxy and get a response
|
||||
* requestBody:
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* type: object
|
||||
* properties:
|
||||
* prompt:
|
||||
* type: string
|
||||
* description: The question to ask ChatGPT
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Question successfully answered
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* type: object
|
||||
* properties:
|
||||
* success:
|
||||
* type: boolean
|
||||
* description: Whether the request was successful
|
||||
* data:
|
||||
* type: string
|
||||
* description: The answer from ChatGPT
|
||||
* 400:
|
||||
* description: Invalid request
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.post(
|
||||
'/ask-gpt',
|
||||
wrapAsync(async (req, res) => {
|
||||
const { prompt } = req.body;
|
||||
if (!prompt) {
|
||||
return res.status(400).send({
|
||||
success: false,
|
||||
error: 'Prompt is required',
|
||||
});
|
||||
}
|
||||
|
||||
const response = await askGpt(prompt);
|
||||
|
||||
if (response.success) {
|
||||
return res.status(200).send(response);
|
||||
} else {
|
||||
return res.status(500).send(response);
|
||||
}
|
||||
}),
|
||||
);
|
||||
|
||||
|
||||
module.exports = router;
|
||||
2
backend/src/routes/organizationLogin.js
Normal file
2
backend/src/routes/organizationLogin.js
Normal file
@ -0,0 +1,2 @@
|
||||
|
||||
|
||||
447
backend/src/routes/patient_dossiers.js
Normal file
447
backend/src/routes/patient_dossiers.js
Normal file
@ -0,0 +1,447 @@
|
||||
|
||||
const express = require('express');
|
||||
|
||||
const Patient_dossiersService = require('../services/patient_dossiers');
|
||||
const Patient_dossiersDBApi = require('../db/api/patient_dossiers');
|
||||
const wrapAsync = require('../helpers').wrapAsync;
|
||||
|
||||
|
||||
const router = express.Router();
|
||||
|
||||
const { parse } = require('json2csv');
|
||||
|
||||
|
||||
const {
|
||||
checkCrudPermissions,
|
||||
} = require('../middlewares/check-permissions');
|
||||
|
||||
router.use(checkCrudPermissions('patient_dossiers'));
|
||||
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* components:
|
||||
* schemas:
|
||||
* Patient_dossiers:
|
||||
* type: object
|
||||
* properties:
|
||||
|
||||
* chief_complaint:
|
||||
* type: string
|
||||
* default: chief_complaint
|
||||
* history_of_present_illness:
|
||||
* type: string
|
||||
* default: history_of_present_illness
|
||||
* past_medical_history:
|
||||
* type: string
|
||||
* default: past_medical_history
|
||||
* surgical_history:
|
||||
* type: string
|
||||
* default: surgical_history
|
||||
* family_history:
|
||||
* type: string
|
||||
* default: family_history
|
||||
* allergies:
|
||||
* type: string
|
||||
* default: allergies
|
||||
* current_medications:
|
||||
* type: string
|
||||
* default: current_medications
|
||||
|
||||
|
||||
|
||||
*/
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* tags:
|
||||
* name: Patient_dossiers
|
||||
* description: The Patient_dossiers managing API
|
||||
*/
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/patient_dossiers:
|
||||
* post:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Patient_dossiers]
|
||||
* summary: Add new item
|
||||
* description: Add new item
|
||||
* requestBody:
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* data:
|
||||
* description: Data of the updated item
|
||||
* type: object
|
||||
* $ref: "#/components/schemas/Patient_dossiers"
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The item was successfully added
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Patient_dossiers"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 405:
|
||||
* description: Invalid input data
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.post('/', wrapAsync(async (req, res) => {
|
||||
const referer = req.headers.referer || `${req.protocol}://${req.hostname}${req.originalUrl}`;
|
||||
const link = new URL(referer);
|
||||
await Patient_dossiersService.create(req.body.data, req.currentUser, true, link.host);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/budgets/bulk-import:
|
||||
* post:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Patient_dossiers]
|
||||
* summary: Bulk import items
|
||||
* description: Bulk import items
|
||||
* requestBody:
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* data:
|
||||
* description: Data of the updated items
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Patient_dossiers"
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The items were successfully imported
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Patient_dossiers"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 405:
|
||||
* description: Invalid input data
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*
|
||||
*/
|
||||
router.post('/bulk-import', wrapAsync(async (req, res) => {
|
||||
const referer = req.headers.referer || `${req.protocol}://${req.hostname}${req.originalUrl}`;
|
||||
const link = new URL(referer);
|
||||
await Patient_dossiersService.bulkImport(req, res, true, link.host);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/patient_dossiers/{id}:
|
||||
* put:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Patient_dossiers]
|
||||
* summary: Update the data of the selected item
|
||||
* description: Update the data of the selected item
|
||||
* parameters:
|
||||
* - in: path
|
||||
* name: id
|
||||
* description: Item ID to update
|
||||
* required: true
|
||||
* schema:
|
||||
* type: string
|
||||
* requestBody:
|
||||
* description: Set new item data
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* id:
|
||||
* description: ID of the updated item
|
||||
* type: string
|
||||
* data:
|
||||
* description: Data of the updated item
|
||||
* type: object
|
||||
* $ref: "#/components/schemas/Patient_dossiers"
|
||||
* required:
|
||||
* - id
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The item data was successfully updated
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Patient_dossiers"
|
||||
* 400:
|
||||
* description: Invalid ID supplied
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Item not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.put('/:id', wrapAsync(async (req, res) => {
|
||||
await Patient_dossiersService.update(req.body.data, req.body.id, req.currentUser);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/patient_dossiers/{id}:
|
||||
* delete:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Patient_dossiers]
|
||||
* summary: Delete the selected item
|
||||
* description: Delete the selected item
|
||||
* parameters:
|
||||
* - in: path
|
||||
* name: id
|
||||
* description: Item ID to delete
|
||||
* required: true
|
||||
* schema:
|
||||
* type: string
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The item was successfully deleted
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Patient_dossiers"
|
||||
* 400:
|
||||
* description: Invalid ID supplied
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Item not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.delete('/:id', wrapAsync(async (req, res) => {
|
||||
await Patient_dossiersService.remove(req.params.id, req.currentUser);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/patient_dossiers/deleteByIds:
|
||||
* post:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Patient_dossiers]
|
||||
* summary: Delete the selected item list
|
||||
* description: Delete the selected item list
|
||||
* requestBody:
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* ids:
|
||||
* description: IDs of the updated items
|
||||
* type: array
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The items was successfully deleted
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Patient_dossiers"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Items not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.post('/deleteByIds', wrapAsync(async (req, res) => {
|
||||
await Patient_dossiersService.deleteByIds(req.body.data, req.currentUser);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/patient_dossiers:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Patient_dossiers]
|
||||
* summary: Get all patient_dossiers
|
||||
* description: Get all patient_dossiers
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Patient_dossiers list successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Patient_dossiers"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Data not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/', wrapAsync(async (req, res) => {
|
||||
const filetype = req.query.filetype
|
||||
|
||||
const currentUser = req.currentUser;
|
||||
const payload = await Patient_dossiersDBApi.findAll(
|
||||
req.query, { currentUser }
|
||||
);
|
||||
if (filetype && filetype === 'csv') {
|
||||
const fields = ['id','chief_complaint','history_of_present_illness','past_medical_history','surgical_history','family_history','allergies','current_medications',
|
||||
|
||||
|
||||
'last_updated_on',
|
||||
];
|
||||
const opts = { fields };
|
||||
try {
|
||||
const csv = parse(payload.rows, opts);
|
||||
res.status(200).attachment(csv);
|
||||
res.send(csv)
|
||||
|
||||
} catch (err) {
|
||||
console.error(err);
|
||||
}
|
||||
} else {
|
||||
res.status(200).send(payload);
|
||||
}
|
||||
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/patient_dossiers/count:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Patient_dossiers]
|
||||
* summary: Count all patient_dossiers
|
||||
* description: Count all patient_dossiers
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Patient_dossiers count successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Patient_dossiers"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Data not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/count', wrapAsync(async (req, res) => {
|
||||
|
||||
const currentUser = req.currentUser;
|
||||
const payload = await Patient_dossiersDBApi.findAll(
|
||||
req.query,
|
||||
null,
|
||||
{ countOnly: true, currentUser }
|
||||
);
|
||||
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/patient_dossiers/autocomplete:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Patient_dossiers]
|
||||
* summary: Find all patient_dossiers that match search criteria
|
||||
* description: Find all patient_dossiers that match search criteria
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Patient_dossiers list successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Patient_dossiers"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Data not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/autocomplete', async (req, res) => {
|
||||
|
||||
const payload = await Patient_dossiersDBApi.findAllAutocomplete(
|
||||
req.query.query,
|
||||
req.query.limit,
|
||||
req.query.offset,
|
||||
|
||||
);
|
||||
|
||||
res.status(200).send(payload);
|
||||
});
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/patient_dossiers/{id}:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Patient_dossiers]
|
||||
* summary: Get selected item
|
||||
* description: Get selected item
|
||||
* parameters:
|
||||
* - in: path
|
||||
* name: id
|
||||
* description: ID of item to get
|
||||
* required: true
|
||||
* schema:
|
||||
* type: string
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Selected item successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Patient_dossiers"
|
||||
* 400:
|
||||
* description: Invalid ID supplied
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Item not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/:id', wrapAsync(async (req, res) => {
|
||||
const payload = await Patient_dossiersDBApi.findBy(
|
||||
{ id: req.params.id },
|
||||
);
|
||||
|
||||
|
||||
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
router.use('/', require('../helpers').commonErrorHandler);
|
||||
|
||||
module.exports = router;
|
||||
449
backend/src/routes/patients.js
Normal file
449
backend/src/routes/patients.js
Normal file
@ -0,0 +1,449 @@
|
||||
|
||||
const express = require('express');
|
||||
|
||||
const PatientsService = require('../services/patients');
|
||||
const PatientsDBApi = require('../db/api/patients');
|
||||
const wrapAsync = require('../helpers').wrapAsync;
|
||||
|
||||
|
||||
const router = express.Router();
|
||||
|
||||
const { parse } = require('json2csv');
|
||||
|
||||
|
||||
const {
|
||||
checkCrudPermissions,
|
||||
} = require('../middlewares/check-permissions');
|
||||
|
||||
router.use(checkCrudPermissions('patients'));
|
||||
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* components:
|
||||
* schemas:
|
||||
* Patients:
|
||||
* type: object
|
||||
* properties:
|
||||
|
||||
* medical_record_number:
|
||||
* type: string
|
||||
* default: medical_record_number
|
||||
* national_id:
|
||||
* type: string
|
||||
* default: national_id
|
||||
* full_name:
|
||||
* type: string
|
||||
* default: full_name
|
||||
* phone:
|
||||
* type: string
|
||||
* default: phone
|
||||
* address:
|
||||
* type: string
|
||||
* default: address
|
||||
* emergency_contact_name:
|
||||
* type: string
|
||||
* default: emergency_contact_name
|
||||
* emergency_contact_phone:
|
||||
* type: string
|
||||
* default: emergency_contact_phone
|
||||
|
||||
|
||||
|
||||
*
|
||||
*
|
||||
*/
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* tags:
|
||||
* name: Patients
|
||||
* description: The Patients managing API
|
||||
*/
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/patients:
|
||||
* post:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Patients]
|
||||
* summary: Add new item
|
||||
* description: Add new item
|
||||
* requestBody:
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* data:
|
||||
* description: Data of the updated item
|
||||
* type: object
|
||||
* $ref: "#/components/schemas/Patients"
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The item was successfully added
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Patients"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 405:
|
||||
* description: Invalid input data
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.post('/', wrapAsync(async (req, res) => {
|
||||
const referer = req.headers.referer || `${req.protocol}://${req.hostname}${req.originalUrl}`;
|
||||
const link = new URL(referer);
|
||||
await PatientsService.create(req.body.data, req.currentUser, true, link.host);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/budgets/bulk-import:
|
||||
* post:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Patients]
|
||||
* summary: Bulk import items
|
||||
* description: Bulk import items
|
||||
* requestBody:
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* data:
|
||||
* description: Data of the updated items
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Patients"
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The items were successfully imported
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Patients"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 405:
|
||||
* description: Invalid input data
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*
|
||||
*/
|
||||
router.post('/bulk-import', wrapAsync(async (req, res) => {
|
||||
const referer = req.headers.referer || `${req.protocol}://${req.hostname}${req.originalUrl}`;
|
||||
const link = new URL(referer);
|
||||
await PatientsService.bulkImport(req, res, true, link.host);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/patients/{id}:
|
||||
* put:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Patients]
|
||||
* summary: Update the data of the selected item
|
||||
* description: Update the data of the selected item
|
||||
* parameters:
|
||||
* - in: path
|
||||
* name: id
|
||||
* description: Item ID to update
|
||||
* required: true
|
||||
* schema:
|
||||
* type: string
|
||||
* requestBody:
|
||||
* description: Set new item data
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* id:
|
||||
* description: ID of the updated item
|
||||
* type: string
|
||||
* data:
|
||||
* description: Data of the updated item
|
||||
* type: object
|
||||
* $ref: "#/components/schemas/Patients"
|
||||
* required:
|
||||
* - id
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The item data was successfully updated
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Patients"
|
||||
* 400:
|
||||
* description: Invalid ID supplied
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Item not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.put('/:id', wrapAsync(async (req, res) => {
|
||||
await PatientsService.update(req.body.data, req.body.id, req.currentUser);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/patients/{id}:
|
||||
* delete:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Patients]
|
||||
* summary: Delete the selected item
|
||||
* description: Delete the selected item
|
||||
* parameters:
|
||||
* - in: path
|
||||
* name: id
|
||||
* description: Item ID to delete
|
||||
* required: true
|
||||
* schema:
|
||||
* type: string
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The item was successfully deleted
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Patients"
|
||||
* 400:
|
||||
* description: Invalid ID supplied
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Item not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.delete('/:id', wrapAsync(async (req, res) => {
|
||||
await PatientsService.remove(req.params.id, req.currentUser);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/patients/deleteByIds:
|
||||
* post:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Patients]
|
||||
* summary: Delete the selected item list
|
||||
* description: Delete the selected item list
|
||||
* requestBody:
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* ids:
|
||||
* description: IDs of the updated items
|
||||
* type: array
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The items was successfully deleted
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Patients"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Items not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.post('/deleteByIds', wrapAsync(async (req, res) => {
|
||||
await PatientsService.deleteByIds(req.body.data, req.currentUser);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/patients:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Patients]
|
||||
* summary: Get all patients
|
||||
* description: Get all patients
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Patients list successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Patients"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Data not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/', wrapAsync(async (req, res) => {
|
||||
const filetype = req.query.filetype
|
||||
|
||||
const currentUser = req.currentUser;
|
||||
const payload = await PatientsDBApi.findAll(
|
||||
req.query, { currentUser }
|
||||
);
|
||||
if (filetype && filetype === 'csv') {
|
||||
const fields = ['id','medical_record_number','national_id','full_name','phone','address','emergency_contact_name','emergency_contact_phone',
|
||||
|
||||
|
||||
'date_of_birth','registration_date',
|
||||
];
|
||||
const opts = { fields };
|
||||
try {
|
||||
const csv = parse(payload.rows, opts);
|
||||
res.status(200).attachment(csv);
|
||||
res.send(csv)
|
||||
|
||||
} catch (err) {
|
||||
console.error(err);
|
||||
}
|
||||
} else {
|
||||
res.status(200).send(payload);
|
||||
}
|
||||
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/patients/count:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Patients]
|
||||
* summary: Count all patients
|
||||
* description: Count all patients
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Patients count successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Patients"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Data not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/count', wrapAsync(async (req, res) => {
|
||||
|
||||
const currentUser = req.currentUser;
|
||||
const payload = await PatientsDBApi.findAll(
|
||||
req.query,
|
||||
null,
|
||||
{ countOnly: true, currentUser }
|
||||
);
|
||||
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/patients/autocomplete:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Patients]
|
||||
* summary: Find all patients that match search criteria
|
||||
* description: Find all patients that match search criteria
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Patients list successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Patients"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Data not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/autocomplete', async (req, res) => {
|
||||
|
||||
const payload = await PatientsDBApi.findAllAutocomplete(
|
||||
req.query.query,
|
||||
req.query.limit,
|
||||
req.query.offset,
|
||||
|
||||
);
|
||||
|
||||
res.status(200).send(payload);
|
||||
});
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/patients/{id}:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Patients]
|
||||
* summary: Get selected item
|
||||
* description: Get selected item
|
||||
* parameters:
|
||||
* - in: path
|
||||
* name: id
|
||||
* description: ID of item to get
|
||||
* required: true
|
||||
* schema:
|
||||
* type: string
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Selected item successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Patients"
|
||||
* 400:
|
||||
* description: Invalid ID supplied
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Item not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/:id', wrapAsync(async (req, res) => {
|
||||
const payload = await PatientsDBApi.findBy(
|
||||
{ id: req.params.id },
|
||||
);
|
||||
|
||||
|
||||
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
router.use('/', require('../helpers').commonErrorHandler);
|
||||
|
||||
module.exports = router;
|
||||
429
backend/src/routes/permissions.js
Normal file
429
backend/src/routes/permissions.js
Normal file
@ -0,0 +1,429 @@
|
||||
|
||||
const express = require('express');
|
||||
|
||||
const PermissionsService = require('../services/permissions');
|
||||
const PermissionsDBApi = require('../db/api/permissions');
|
||||
const wrapAsync = require('../helpers').wrapAsync;
|
||||
|
||||
|
||||
const router = express.Router();
|
||||
|
||||
const { parse } = require('json2csv');
|
||||
|
||||
|
||||
const {
|
||||
checkCrudPermissions,
|
||||
} = require('../middlewares/check-permissions');
|
||||
|
||||
router.use(checkCrudPermissions('permissions'));
|
||||
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* components:
|
||||
* schemas:
|
||||
* Permissions:
|
||||
* type: object
|
||||
* properties:
|
||||
|
||||
* name:
|
||||
* type: string
|
||||
* default: name
|
||||
|
||||
|
||||
|
||||
*/
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* tags:
|
||||
* name: Permissions
|
||||
* description: The Permissions managing API
|
||||
*/
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/permissions:
|
||||
* post:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Permissions]
|
||||
* summary: Add new item
|
||||
* description: Add new item
|
||||
* requestBody:
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* data:
|
||||
* description: Data of the updated item
|
||||
* type: object
|
||||
* $ref: "#/components/schemas/Permissions"
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The item was successfully added
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Permissions"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 405:
|
||||
* description: Invalid input data
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.post('/', wrapAsync(async (req, res) => {
|
||||
const referer = req.headers.referer || `${req.protocol}://${req.hostname}${req.originalUrl}`;
|
||||
const link = new URL(referer);
|
||||
await PermissionsService.create(req.body.data, req.currentUser, true, link.host);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/budgets/bulk-import:
|
||||
* post:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Permissions]
|
||||
* summary: Bulk import items
|
||||
* description: Bulk import items
|
||||
* requestBody:
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* data:
|
||||
* description: Data of the updated items
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Permissions"
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The items were successfully imported
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Permissions"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 405:
|
||||
* description: Invalid input data
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*
|
||||
*/
|
||||
router.post('/bulk-import', wrapAsync(async (req, res) => {
|
||||
const referer = req.headers.referer || `${req.protocol}://${req.hostname}${req.originalUrl}`;
|
||||
const link = new URL(referer);
|
||||
await PermissionsService.bulkImport(req, res, true, link.host);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/permissions/{id}:
|
||||
* put:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Permissions]
|
||||
* summary: Update the data of the selected item
|
||||
* description: Update the data of the selected item
|
||||
* parameters:
|
||||
* - in: path
|
||||
* name: id
|
||||
* description: Item ID to update
|
||||
* required: true
|
||||
* schema:
|
||||
* type: string
|
||||
* requestBody:
|
||||
* description: Set new item data
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* id:
|
||||
* description: ID of the updated item
|
||||
* type: string
|
||||
* data:
|
||||
* description: Data of the updated item
|
||||
* type: object
|
||||
* $ref: "#/components/schemas/Permissions"
|
||||
* required:
|
||||
* - id
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The item data was successfully updated
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Permissions"
|
||||
* 400:
|
||||
* description: Invalid ID supplied
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Item not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.put('/:id', wrapAsync(async (req, res) => {
|
||||
await PermissionsService.update(req.body.data, req.body.id, req.currentUser);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/permissions/{id}:
|
||||
* delete:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Permissions]
|
||||
* summary: Delete the selected item
|
||||
* description: Delete the selected item
|
||||
* parameters:
|
||||
* - in: path
|
||||
* name: id
|
||||
* description: Item ID to delete
|
||||
* required: true
|
||||
* schema:
|
||||
* type: string
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The item was successfully deleted
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Permissions"
|
||||
* 400:
|
||||
* description: Invalid ID supplied
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Item not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.delete('/:id', wrapAsync(async (req, res) => {
|
||||
await PermissionsService.remove(req.params.id, req.currentUser);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/permissions/deleteByIds:
|
||||
* post:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Permissions]
|
||||
* summary: Delete the selected item list
|
||||
* description: Delete the selected item list
|
||||
* requestBody:
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* ids:
|
||||
* description: IDs of the updated items
|
||||
* type: array
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The items was successfully deleted
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Permissions"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Items not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.post('/deleteByIds', wrapAsync(async (req, res) => {
|
||||
await PermissionsService.deleteByIds(req.body.data, req.currentUser);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/permissions:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Permissions]
|
||||
* summary: Get all permissions
|
||||
* description: Get all permissions
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Permissions list successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Permissions"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Data not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/', wrapAsync(async (req, res) => {
|
||||
const filetype = req.query.filetype
|
||||
|
||||
const currentUser = req.currentUser;
|
||||
const payload = await PermissionsDBApi.findAll(
|
||||
req.query, { currentUser }
|
||||
);
|
||||
if (filetype && filetype === 'csv') {
|
||||
const fields = ['id','name',
|
||||
|
||||
|
||||
|
||||
];
|
||||
const opts = { fields };
|
||||
try {
|
||||
const csv = parse(payload.rows, opts);
|
||||
res.status(200).attachment(csv);
|
||||
res.send(csv)
|
||||
|
||||
} catch (err) {
|
||||
console.error(err);
|
||||
}
|
||||
} else {
|
||||
res.status(200).send(payload);
|
||||
}
|
||||
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/permissions/count:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Permissions]
|
||||
* summary: Count all permissions
|
||||
* description: Count all permissions
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Permissions count successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Permissions"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Data not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/count', wrapAsync(async (req, res) => {
|
||||
|
||||
const currentUser = req.currentUser;
|
||||
const payload = await PermissionsDBApi.findAll(
|
||||
req.query,
|
||||
null,
|
||||
{ countOnly: true, currentUser }
|
||||
);
|
||||
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/permissions/autocomplete:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Permissions]
|
||||
* summary: Find all permissions that match search criteria
|
||||
* description: Find all permissions that match search criteria
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Permissions list successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Permissions"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Data not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/autocomplete', async (req, res) => {
|
||||
|
||||
const payload = await PermissionsDBApi.findAllAutocomplete(
|
||||
req.query.query,
|
||||
req.query.limit,
|
||||
req.query.offset,
|
||||
|
||||
);
|
||||
|
||||
res.status(200).send(payload);
|
||||
});
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/permissions/{id}:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Permissions]
|
||||
* summary: Get selected item
|
||||
* description: Get selected item
|
||||
* parameters:
|
||||
* - in: path
|
||||
* name: id
|
||||
* description: ID of item to get
|
||||
* required: true
|
||||
* schema:
|
||||
* type: string
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Selected item successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Permissions"
|
||||
* 400:
|
||||
* description: Invalid ID supplied
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Item not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/:id', wrapAsync(async (req, res) => {
|
||||
const payload = await PermissionsDBApi.findBy(
|
||||
{ id: req.params.id },
|
||||
);
|
||||
|
||||
|
||||
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
router.use('/', require('../helpers').commonErrorHandler);
|
||||
|
||||
module.exports = router;
|
||||
104
backend/src/routes/pexels.js
Normal file
104
backend/src/routes/pexels.js
Normal file
@ -0,0 +1,104 @@
|
||||
const express = require('express');
|
||||
const router = express.Router();
|
||||
const { pexelsKey, pexelsQuery } = require('../config');
|
||||
const fetch = require('node-fetch');
|
||||
|
||||
const KEY = pexelsKey;
|
||||
|
||||
router.get('/image', async (req, res) => {
|
||||
const headers = {
|
||||
Authorization: `${KEY}`,
|
||||
};
|
||||
const query = pexelsQuery || 'nature';
|
||||
const orientation = 'portrait';
|
||||
const perPage = 1;
|
||||
const url = `https://api.pexels.com/v1/search?query=${query}&orientation=${orientation}&per_page=${perPage}&page=1`;
|
||||
|
||||
try {
|
||||
const response = await fetch(url, { headers });
|
||||
const data = await response.json();
|
||||
res.status(200).json(data.photos[0]);
|
||||
} catch (error) {
|
||||
res.status(200).json({ error: 'Failed to fetch image' });
|
||||
}
|
||||
});
|
||||
|
||||
router.get('/video', async (req, res) => {
|
||||
const headers = {
|
||||
Authorization: `${KEY}`,
|
||||
};
|
||||
const query = pexelsQuery || 'nature';
|
||||
const orientation = 'portrait';
|
||||
const perPage = 1;
|
||||
const url = `https://api.pexels.com/videos/search?query=${query}&orientation=${orientation}&per_page=${perPage}&page=1`;
|
||||
|
||||
try {
|
||||
const response = await fetch(url, { headers });
|
||||
const data = await response.json();
|
||||
res.status(200).json(data.videos[0]);
|
||||
} catch (error) {
|
||||
res.status(200).json({ error: 'Failed to fetch video' });
|
||||
}
|
||||
});
|
||||
|
||||
router.get('/multiple-images', async (req, res) => {
|
||||
const headers = {
|
||||
Authorization: `${KEY}`,
|
||||
};
|
||||
|
||||
const queries = req.query.queries
|
||||
? req.query.queries.split(',')
|
||||
: ['home', 'apple', 'pizza', 'mountains', 'cat'];
|
||||
const orientation = 'square';
|
||||
const perPage = 1;
|
||||
|
||||
const fallbackImage = {
|
||||
src: 'https://images.pexels.com/photos/8199252/pexels-photo-8199252.jpeg',
|
||||
photographer: 'Yan Krukau',
|
||||
photographer_url: 'https://www.pexels.com/@yankrukov',
|
||||
};
|
||||
const fetchFallbackImage = async () => {
|
||||
try {
|
||||
const response = await fetch('https://picsum.photos/600');
|
||||
return {
|
||||
src: response.url,
|
||||
photographer: 'Random Picsum',
|
||||
photographer_url: 'https://picsum.photos/',
|
||||
};
|
||||
} catch (error) {
|
||||
return fallbackImage;
|
||||
}
|
||||
};
|
||||
const fetchImage = async (query) => {
|
||||
const url = `https://api.pexels.com/v1/search?query=${query}&orientation=${orientation}&per_page=${perPage}&page=1`;
|
||||
const response = await fetch(url, { headers });
|
||||
const data = await response.json();
|
||||
return data.photos[0] || null;
|
||||
};
|
||||
|
||||
const imagePromises = queries.map((query) => fetchImage(query));
|
||||
const imagesResults = await Promise.allSettled(imagePromises);
|
||||
|
||||
const formattedImages = await Promise.all(imagesResults.map(async (result) => {
|
||||
if (result.status === 'fulfilled' && result.value) {
|
||||
const image = result.value;
|
||||
return {
|
||||
src: image.src?.original || fallbackImage.src,
|
||||
photographer: image.photographer || fallbackImage.photographer,
|
||||
photographer_url: image.photographer_url || fallbackImage.photographer_url,
|
||||
};
|
||||
} else {
|
||||
const fallback = await fetchFallbackImage();
|
||||
return {
|
||||
src: fallback.src || '',
|
||||
photographer: fallback.photographer || 'Unknown',
|
||||
photographer_url: fallback.photographer_url || '',
|
||||
};
|
||||
}
|
||||
}));
|
||||
|
||||
|
||||
res.json(formattedImages);
|
||||
});
|
||||
|
||||
module.exports = router;
|
||||
436
backend/src/routes/radiotherapy_fractions.js
Normal file
436
backend/src/routes/radiotherapy_fractions.js
Normal file
@ -0,0 +1,436 @@
|
||||
|
||||
const express = require('express');
|
||||
|
||||
const Radiotherapy_fractionsService = require('../services/radiotherapy_fractions');
|
||||
const Radiotherapy_fractionsDBApi = require('../db/api/radiotherapy_fractions');
|
||||
const wrapAsync = require('../helpers').wrapAsync;
|
||||
|
||||
|
||||
const router = express.Router();
|
||||
|
||||
const { parse } = require('json2csv');
|
||||
|
||||
|
||||
const {
|
||||
checkCrudPermissions,
|
||||
} = require('../middlewares/check-permissions');
|
||||
|
||||
router.use(checkCrudPermissions('radiotherapy_fractions'));
|
||||
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* components:
|
||||
* schemas:
|
||||
* Radiotherapy_fractions:
|
||||
* type: object
|
||||
* properties:
|
||||
|
||||
* notes:
|
||||
* type: string
|
||||
* default: notes
|
||||
|
||||
* fraction_number:
|
||||
* type: integer
|
||||
* format: int64
|
||||
|
||||
* delivered_dose_gy:
|
||||
* type: integer
|
||||
* format: int64
|
||||
|
||||
*
|
||||
*/
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* tags:
|
||||
* name: Radiotherapy_fractions
|
||||
* description: The Radiotherapy_fractions managing API
|
||||
*/
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/radiotherapy_fractions:
|
||||
* post:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Radiotherapy_fractions]
|
||||
* summary: Add new item
|
||||
* description: Add new item
|
||||
* requestBody:
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* data:
|
||||
* description: Data of the updated item
|
||||
* type: object
|
||||
* $ref: "#/components/schemas/Radiotherapy_fractions"
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The item was successfully added
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Radiotherapy_fractions"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 405:
|
||||
* description: Invalid input data
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.post('/', wrapAsync(async (req, res) => {
|
||||
const referer = req.headers.referer || `${req.protocol}://${req.hostname}${req.originalUrl}`;
|
||||
const link = new URL(referer);
|
||||
await Radiotherapy_fractionsService.create(req.body.data, req.currentUser, true, link.host);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/budgets/bulk-import:
|
||||
* post:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Radiotherapy_fractions]
|
||||
* summary: Bulk import items
|
||||
* description: Bulk import items
|
||||
* requestBody:
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* data:
|
||||
* description: Data of the updated items
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Radiotherapy_fractions"
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The items were successfully imported
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Radiotherapy_fractions"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 405:
|
||||
* description: Invalid input data
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*
|
||||
*/
|
||||
router.post('/bulk-import', wrapAsync(async (req, res) => {
|
||||
const referer = req.headers.referer || `${req.protocol}://${req.hostname}${req.originalUrl}`;
|
||||
const link = new URL(referer);
|
||||
await Radiotherapy_fractionsService.bulkImport(req, res, true, link.host);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/radiotherapy_fractions/{id}:
|
||||
* put:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Radiotherapy_fractions]
|
||||
* summary: Update the data of the selected item
|
||||
* description: Update the data of the selected item
|
||||
* parameters:
|
||||
* - in: path
|
||||
* name: id
|
||||
* description: Item ID to update
|
||||
* required: true
|
||||
* schema:
|
||||
* type: string
|
||||
* requestBody:
|
||||
* description: Set new item data
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* id:
|
||||
* description: ID of the updated item
|
||||
* type: string
|
||||
* data:
|
||||
* description: Data of the updated item
|
||||
* type: object
|
||||
* $ref: "#/components/schemas/Radiotherapy_fractions"
|
||||
* required:
|
||||
* - id
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The item data was successfully updated
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Radiotherapy_fractions"
|
||||
* 400:
|
||||
* description: Invalid ID supplied
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Item not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.put('/:id', wrapAsync(async (req, res) => {
|
||||
await Radiotherapy_fractionsService.update(req.body.data, req.body.id, req.currentUser);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/radiotherapy_fractions/{id}:
|
||||
* delete:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Radiotherapy_fractions]
|
||||
* summary: Delete the selected item
|
||||
* description: Delete the selected item
|
||||
* parameters:
|
||||
* - in: path
|
||||
* name: id
|
||||
* description: Item ID to delete
|
||||
* required: true
|
||||
* schema:
|
||||
* type: string
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The item was successfully deleted
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Radiotherapy_fractions"
|
||||
* 400:
|
||||
* description: Invalid ID supplied
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Item not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.delete('/:id', wrapAsync(async (req, res) => {
|
||||
await Radiotherapy_fractionsService.remove(req.params.id, req.currentUser);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/radiotherapy_fractions/deleteByIds:
|
||||
* post:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Radiotherapy_fractions]
|
||||
* summary: Delete the selected item list
|
||||
* description: Delete the selected item list
|
||||
* requestBody:
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* ids:
|
||||
* description: IDs of the updated items
|
||||
* type: array
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The items was successfully deleted
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Radiotherapy_fractions"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Items not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.post('/deleteByIds', wrapAsync(async (req, res) => {
|
||||
await Radiotherapy_fractionsService.deleteByIds(req.body.data, req.currentUser);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/radiotherapy_fractions:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Radiotherapy_fractions]
|
||||
* summary: Get all radiotherapy_fractions
|
||||
* description: Get all radiotherapy_fractions
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Radiotherapy_fractions list successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Radiotherapy_fractions"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Data not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/', wrapAsync(async (req, res) => {
|
||||
const filetype = req.query.filetype
|
||||
|
||||
const currentUser = req.currentUser;
|
||||
const payload = await Radiotherapy_fractionsDBApi.findAll(
|
||||
req.query, { currentUser }
|
||||
);
|
||||
if (filetype && filetype === 'csv') {
|
||||
const fields = ['id','notes',
|
||||
'fraction_number',
|
||||
'delivered_dose_gy',
|
||||
'scheduled_datetime','delivered_datetime',
|
||||
];
|
||||
const opts = { fields };
|
||||
try {
|
||||
const csv = parse(payload.rows, opts);
|
||||
res.status(200).attachment(csv);
|
||||
res.send(csv)
|
||||
|
||||
} catch (err) {
|
||||
console.error(err);
|
||||
}
|
||||
} else {
|
||||
res.status(200).send(payload);
|
||||
}
|
||||
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/radiotherapy_fractions/count:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Radiotherapy_fractions]
|
||||
* summary: Count all radiotherapy_fractions
|
||||
* description: Count all radiotherapy_fractions
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Radiotherapy_fractions count successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Radiotherapy_fractions"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Data not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/count', wrapAsync(async (req, res) => {
|
||||
|
||||
const currentUser = req.currentUser;
|
||||
const payload = await Radiotherapy_fractionsDBApi.findAll(
|
||||
req.query,
|
||||
null,
|
||||
{ countOnly: true, currentUser }
|
||||
);
|
||||
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/radiotherapy_fractions/autocomplete:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Radiotherapy_fractions]
|
||||
* summary: Find all radiotherapy_fractions that match search criteria
|
||||
* description: Find all radiotherapy_fractions that match search criteria
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Radiotherapy_fractions list successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Radiotherapy_fractions"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Data not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/autocomplete', async (req, res) => {
|
||||
|
||||
const payload = await Radiotherapy_fractionsDBApi.findAllAutocomplete(
|
||||
req.query.query,
|
||||
req.query.limit,
|
||||
req.query.offset,
|
||||
|
||||
);
|
||||
|
||||
res.status(200).send(payload);
|
||||
});
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/radiotherapy_fractions/{id}:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Radiotherapy_fractions]
|
||||
* summary: Get selected item
|
||||
* description: Get selected item
|
||||
* parameters:
|
||||
* - in: path
|
||||
* name: id
|
||||
* description: ID of item to get
|
||||
* required: true
|
||||
* schema:
|
||||
* type: string
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Selected item successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Radiotherapy_fractions"
|
||||
* 400:
|
||||
* description: Invalid ID supplied
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Item not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/:id', wrapAsync(async (req, res) => {
|
||||
const payload = await Radiotherapy_fractionsDBApi.findBy(
|
||||
{ id: req.params.id },
|
||||
);
|
||||
|
||||
|
||||
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
router.use('/', require('../helpers').commonErrorHandler);
|
||||
|
||||
module.exports = router;
|
||||
443
backend/src/routes/radiotherapy_plans.js
Normal file
443
backend/src/routes/radiotherapy_plans.js
Normal file
@ -0,0 +1,443 @@
|
||||
|
||||
const express = require('express');
|
||||
|
||||
const Radiotherapy_plansService = require('../services/radiotherapy_plans');
|
||||
const Radiotherapy_plansDBApi = require('../db/api/radiotherapy_plans');
|
||||
const wrapAsync = require('../helpers').wrapAsync;
|
||||
|
||||
|
||||
const router = express.Router();
|
||||
|
||||
const { parse } = require('json2csv');
|
||||
|
||||
|
||||
const {
|
||||
checkCrudPermissions,
|
||||
} = require('../middlewares/check-permissions');
|
||||
|
||||
router.use(checkCrudPermissions('radiotherapy_plans'));
|
||||
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* components:
|
||||
* schemas:
|
||||
* Radiotherapy_plans:
|
||||
* type: object
|
||||
* properties:
|
||||
|
||||
* plan_name:
|
||||
* type: string
|
||||
* default: plan_name
|
||||
* site:
|
||||
* type: string
|
||||
* default: site
|
||||
|
||||
* fractions_planned:
|
||||
* type: integer
|
||||
* format: int64
|
||||
|
||||
* total_dose_gy:
|
||||
* type: integer
|
||||
* format: int64
|
||||
* dose_per_fraction_gy:
|
||||
* type: integer
|
||||
* format: int64
|
||||
|
||||
*
|
||||
*
|
||||
*/
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* tags:
|
||||
* name: Radiotherapy_plans
|
||||
* description: The Radiotherapy_plans managing API
|
||||
*/
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/radiotherapy_plans:
|
||||
* post:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Radiotherapy_plans]
|
||||
* summary: Add new item
|
||||
* description: Add new item
|
||||
* requestBody:
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* data:
|
||||
* description: Data of the updated item
|
||||
* type: object
|
||||
* $ref: "#/components/schemas/Radiotherapy_plans"
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The item was successfully added
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Radiotherapy_plans"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 405:
|
||||
* description: Invalid input data
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.post('/', wrapAsync(async (req, res) => {
|
||||
const referer = req.headers.referer || `${req.protocol}://${req.hostname}${req.originalUrl}`;
|
||||
const link = new URL(referer);
|
||||
await Radiotherapy_plansService.create(req.body.data, req.currentUser, true, link.host);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/budgets/bulk-import:
|
||||
* post:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Radiotherapy_plans]
|
||||
* summary: Bulk import items
|
||||
* description: Bulk import items
|
||||
* requestBody:
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* data:
|
||||
* description: Data of the updated items
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Radiotherapy_plans"
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The items were successfully imported
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Radiotherapy_plans"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 405:
|
||||
* description: Invalid input data
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*
|
||||
*/
|
||||
router.post('/bulk-import', wrapAsync(async (req, res) => {
|
||||
const referer = req.headers.referer || `${req.protocol}://${req.hostname}${req.originalUrl}`;
|
||||
const link = new URL(referer);
|
||||
await Radiotherapy_plansService.bulkImport(req, res, true, link.host);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/radiotherapy_plans/{id}:
|
||||
* put:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Radiotherapy_plans]
|
||||
* summary: Update the data of the selected item
|
||||
* description: Update the data of the selected item
|
||||
* parameters:
|
||||
* - in: path
|
||||
* name: id
|
||||
* description: Item ID to update
|
||||
* required: true
|
||||
* schema:
|
||||
* type: string
|
||||
* requestBody:
|
||||
* description: Set new item data
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* id:
|
||||
* description: ID of the updated item
|
||||
* type: string
|
||||
* data:
|
||||
* description: Data of the updated item
|
||||
* type: object
|
||||
* $ref: "#/components/schemas/Radiotherapy_plans"
|
||||
* required:
|
||||
* - id
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The item data was successfully updated
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Radiotherapy_plans"
|
||||
* 400:
|
||||
* description: Invalid ID supplied
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Item not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.put('/:id', wrapAsync(async (req, res) => {
|
||||
await Radiotherapy_plansService.update(req.body.data, req.body.id, req.currentUser);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/radiotherapy_plans/{id}:
|
||||
* delete:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Radiotherapy_plans]
|
||||
* summary: Delete the selected item
|
||||
* description: Delete the selected item
|
||||
* parameters:
|
||||
* - in: path
|
||||
* name: id
|
||||
* description: Item ID to delete
|
||||
* required: true
|
||||
* schema:
|
||||
* type: string
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The item was successfully deleted
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Radiotherapy_plans"
|
||||
* 400:
|
||||
* description: Invalid ID supplied
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Item not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.delete('/:id', wrapAsync(async (req, res) => {
|
||||
await Radiotherapy_plansService.remove(req.params.id, req.currentUser);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/radiotherapy_plans/deleteByIds:
|
||||
* post:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Radiotherapy_plans]
|
||||
* summary: Delete the selected item list
|
||||
* description: Delete the selected item list
|
||||
* requestBody:
|
||||
* required: true
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* properties:
|
||||
* ids:
|
||||
* description: IDs of the updated items
|
||||
* type: array
|
||||
* responses:
|
||||
* 200:
|
||||
* description: The items was successfully deleted
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Radiotherapy_plans"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Items not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.post('/deleteByIds', wrapAsync(async (req, res) => {
|
||||
await Radiotherapy_plansService.deleteByIds(req.body.data, req.currentUser);
|
||||
const payload = true;
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/radiotherapy_plans:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Radiotherapy_plans]
|
||||
* summary: Get all radiotherapy_plans
|
||||
* description: Get all radiotherapy_plans
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Radiotherapy_plans list successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Radiotherapy_plans"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Data not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/', wrapAsync(async (req, res) => {
|
||||
const filetype = req.query.filetype
|
||||
|
||||
const currentUser = req.currentUser;
|
||||
const payload = await Radiotherapy_plansDBApi.findAll(
|
||||
req.query, { currentUser }
|
||||
);
|
||||
if (filetype && filetype === 'csv') {
|
||||
const fields = ['id','plan_name','site',
|
||||
'fractions_planned',
|
||||
'total_dose_gy','dose_per_fraction_gy',
|
||||
'planning_ct_date','start_date','end_date',
|
||||
];
|
||||
const opts = { fields };
|
||||
try {
|
||||
const csv = parse(payload.rows, opts);
|
||||
res.status(200).attachment(csv);
|
||||
res.send(csv)
|
||||
|
||||
} catch (err) {
|
||||
console.error(err);
|
||||
}
|
||||
} else {
|
||||
res.status(200).send(payload);
|
||||
}
|
||||
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/radiotherapy_plans/count:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Radiotherapy_plans]
|
||||
* summary: Count all radiotherapy_plans
|
||||
* description: Count all radiotherapy_plans
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Radiotherapy_plans count successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Radiotherapy_plans"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Data not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/count', wrapAsync(async (req, res) => {
|
||||
|
||||
const currentUser = req.currentUser;
|
||||
const payload = await Radiotherapy_plansDBApi.findAll(
|
||||
req.query,
|
||||
null,
|
||||
{ countOnly: true, currentUser }
|
||||
);
|
||||
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/radiotherapy_plans/autocomplete:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Radiotherapy_plans]
|
||||
* summary: Find all radiotherapy_plans that match search criteria
|
||||
* description: Find all radiotherapy_plans that match search criteria
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Radiotherapy_plans list successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* type: array
|
||||
* items:
|
||||
* $ref: "#/components/schemas/Radiotherapy_plans"
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Data not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/autocomplete', async (req, res) => {
|
||||
|
||||
const payload = await Radiotherapy_plansDBApi.findAllAutocomplete(
|
||||
req.query.query,
|
||||
req.query.limit,
|
||||
req.query.offset,
|
||||
|
||||
);
|
||||
|
||||
res.status(200).send(payload);
|
||||
});
|
||||
|
||||
/**
|
||||
* @swagger
|
||||
* /api/radiotherapy_plans/{id}:
|
||||
* get:
|
||||
* security:
|
||||
* - bearerAuth: []
|
||||
* tags: [Radiotherapy_plans]
|
||||
* summary: Get selected item
|
||||
* description: Get selected item
|
||||
* parameters:
|
||||
* - in: path
|
||||
* name: id
|
||||
* description: ID of item to get
|
||||
* required: true
|
||||
* schema:
|
||||
* type: string
|
||||
* responses:
|
||||
* 200:
|
||||
* description: Selected item successfully received
|
||||
* content:
|
||||
* application/json:
|
||||
* schema:
|
||||
* $ref: "#/components/schemas/Radiotherapy_plans"
|
||||
* 400:
|
||||
* description: Invalid ID supplied
|
||||
* 401:
|
||||
* $ref: "#/components/responses/UnauthorizedError"
|
||||
* 404:
|
||||
* description: Item not found
|
||||
* 500:
|
||||
* description: Some server error
|
||||
*/
|
||||
router.get('/:id', wrapAsync(async (req, res) => {
|
||||
const payload = await Radiotherapy_plansDBApi.findBy(
|
||||
{ id: req.params.id },
|
||||
);
|
||||
|
||||
|
||||
|
||||
res.status(200).send(payload);
|
||||
}));
|
||||
|
||||
router.use('/', require('../helpers').commonErrorHandler);
|
||||
|
||||
module.exports = router;
|
||||
Some files were not shown because too many files have changed in this diff Show More
Loading…
x
Reference in New Issue
Block a user